ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart10e06 |
|---|---|
| Clone Library Name | barley_pub |
>EBP_ORYSA (Q9FTZ2) Probable 3-beta-hydroxysteroid-delta(8),delta(7)-isomerase| (EC 5.3.3.5) (Cholestenol delta-isomerase) (Delta8-delta7 sterol isomerase) (D8-D7 sterol isomerase) Length = 219 Score = 224 bits (572), Expect = 9e-59 Identities = 110/123 (89%), Positives = 112/123 (91%) Frame = -2 Query: 532 VWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSYSHILQFAVCLGQL 353 VWKEYSKGDSRYVARD ATVTVEGITAVLEGPASLLAVYAIAS KSYSHILQF VCLGQL Sbjct: 98 VWKEYSKGDSRYVARDPATVTVEGITAVLEGPASLLAVYAIASGKSYSHILQFTVCLGQL 157 Query: 352 YGCIVYFTTAYLDGFNFWISPFYFWAYFIGANSSWVVIPLLIARRSWNKICAAVHQSEKV 173 YGC+VYF TAYLDGFNFW SPFYFWAYFIGANSSWVVIP +IA RSW KICAA Q EKV Sbjct: 158 YGCLVYFITAYLDGFNFWTSPFYFWAYFIGANSSWVVIPTMIAIRSWKKICAA-FQGEKV 216 Query: 172 KTK 164 KTK Sbjct: 217 KTK 219
>EBP_ARATH (O48962) Probable 3-beta-hydroxysteroid-delta(8),delta(7)-isomerase| (EC 5.3.3.5) (Cholestenol delta-isomerase) (Delta8-delta7 sterol isomerase) (D8-D7 sterol isomerase) Length = 223 Score = 163 bits (412), Expect = 3e-40 Identities = 79/126 (62%), Positives = 99/126 (78%), Gaps = 3/126 (2%) Frame = -2 Query: 532 VWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSYSHILQFAVCLGQL 353 VWKEYSKGDSRYV RD+A V+VEGITAV+ GPASLLA+YAIA KSYS++LQ A+ + QL Sbjct: 94 VWKEYSKGDSRYVGRDSAVVSVEGITAVIVGPASLLAIYAIAKEKSYSYVLQLAISVCQL 153 Query: 352 YGCIVYFTTAYLDGFNFWISPFYFWAYFIGANSSWVVIPLLIARRSWNKICAA---VHQS 182 YGC+VYF TA L+G NF + FY+++Y+IGAN WV+IP LI+ R W KICAA + + Sbjct: 154 YGCLVYFITAILEGDNFATNSFYYYSYYIGANCWWVLIPSLISFRCWKKICAAAAIANNN 213 Query: 181 EKVKTK 164 + KTK Sbjct: 214 VETKTK 219
>EBP_CAVPO (Q60490) 3-beta-hydroxysteroid-delta(8),delta(7)-isomerase (EC| 5.3.3.5) (Cholestenol delta-isomerase) (Delta8-delta7 sterol isomerase) (D8-D7 sterol isomerase) (Emopamil-binding protein) Length = 228 Score = 101 bits (251), Expect = 1e-21 Identities = 49/101 (48%), Positives = 62/101 (61%), Gaps = 2/101 (1%) Frame = -2 Query: 532 VWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSYSHILQFAVCLGQL 353 +WKEY+KGDSRY+ D + +E IT VL GP SL AV A + ++LQF + LGQ+ Sbjct: 100 LWKEYAKGDSRYIIEDNFIICMESITVVLWGPLSLWAVIAFLRQHPSRYVLQFVISLGQI 159 Query: 352 YGCIVYFTTAYLDGFNF--WISPFYFWAYFIGANSSWVVIP 236 YG ++YF T Y DGF P YFW YF N W+VIP Sbjct: 160 YGDLLYFLTEYRDGFQHGEMGHPIYFWFYFFFMNVLWLVIP 200
>EBP_HUMAN (Q15125) 3-beta-hydroxysteroid-delta(8),delta(7)-isomerase (EC| 5.3.3.5) (Cholestenol delta-isomerase) (Delta8-delta7 sterol isomerase) (D8-D7 sterol isomerase) (Emopamil-binding protein) Length = 229 Score = 97.1 bits (240), Expect = 3e-20 Identities = 48/101 (47%), Positives = 62/101 (61%), Gaps = 2/101 (1%) Frame = -2 Query: 532 VWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSYSHILQFAVCLGQL 353 +WKEY+KGDSRY+ D TV +E ITA L GP SL V A + ILQ V +GQ+ Sbjct: 99 LWKEYAKGDSRYILGDNFTVCMETITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQI 158 Query: 352 YGCIVYFTTAYLDGFNFWI--SPFYFWAYFIGANSSWVVIP 236 YG ++YF T + DGF P YFW YF+ N+ W+V+P Sbjct: 159 YGDVLYFLTEHRDGFQHGELGHPLYFWFYFVFMNALWLVLP 199
>EBP_RAT (Q9JJ46) 3-beta-hydroxysteroid-delta(8),delta(7)-isomerase (EC| 5.3.3.5) (Cholestenol delta-isomerase) (Delta8-delta7 sterol isomerase) (D8-D7 sterol isomerase) (Emopamil-binding protein) Length = 229 Score = 96.7 bits (239), Expect = 4e-20 Identities = 47/101 (46%), Positives = 61/101 (60%), Gaps = 2/101 (1%) Frame = -2 Query: 532 VWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSYSHILQFAVCLGQL 353 +WKEYSKGDSRY+ D V +E +TA L GP SL V A + + +LQ V +GQ+ Sbjct: 99 LWKEYSKGDSRYILSDGFIVCMESVTACLWGPLSLWVVIAFLRHQPFRFVLQLVVSVGQI 158 Query: 352 YGCIVYFTTAYLDGFNFWI--SPFYFWAYFIGANSSWVVIP 236 YG ++YF T DGF P YFW YF+ N+ W+VIP Sbjct: 159 YGDVLYFLTELRDGFQHGELGHPLYFWFYFVIMNAIWLVIP 199
>EBP_MOUSE (P70245) 3-beta-hydroxysteroid-delta(8),delta(7)-isomerase (EC| 5.3.3.5) (Cholestenol delta-isomerase) (Delta8-delta7 sterol isomerase) (D8-D7 sterol isomerase) (Emopamil-binding protein) Length = 229 Score = 94.7 bits (234), Expect = 1e-19 Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 2/104 (1%) Frame = -2 Query: 532 VWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSYSHILQFAVCLGQL 353 +WKEYSKGDSRY+ D+ V +E +TA L GP SL V A ++ + +LQ V +GQ+ Sbjct: 99 LWKEYSKGDSRYILSDSFVVCMETVTACLWGPLSLWVVIAFLRQQPFRFVLQLVVSMGQI 158 Query: 352 YGCIVYFTTAYLDGFNFWI--SPFYFWAYFIGANSSWVVIPLLI 227 YG ++YF T +G P YFW YF+ N+ W+VIP ++ Sbjct: 159 YGDVLYFLTELHEGLQHGEIGHPVYFWFYFVFLNAVWLVIPSIL 202
>EBPL_HUMAN (Q9BY08) Emopamil-binding protein-like (Emopamil-binding-related| protein) Length = 206 Score = 87.8 bits (216), Expect = 2e-17 Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 5/130 (3%) Frame = -2 Query: 532 VWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSYSHILQFAVCLGQL 353 +WKEY K D+R+V D V+VE +T L+G +L +YAI K Y H LQ +C+ +L Sbjct: 80 LWKEYGKADARWVYFDPTIVSVEILTVALDGSLALFLIYAIVKEKYYRHFLQITLCVCEL 139 Query: 352 YGCIVYFTTAYLD-----GFNFWISPFYFWAYFIGANSSWVVIPLLIARRSWNKICAAVH 188 YGC + F +L + W+ Y W Y N WV+IP L+ +SW ++ +H Sbjct: 140 YGCWMTFLPEWLTRSPNLNTSNWL---YCWLYLFFFNGVWVLIPGLLLWQSWLEL-KKMH 195 Query: 187 QSEKVKTK*F 158 Q E K F Sbjct: 196 QKETSSVKKF 205
>EBPL_MOUSE (Q9D0P0) Emopamil-binding protein-like (Emopamil-binding-related| protein) Length = 206 Score = 87.0 bits (214), Expect = 3e-17 Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 5/112 (4%) Frame = -2 Query: 532 VWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSYSHILQFAVCLGQL 353 +WKEY K D+R++ D V++E +T VL+G +L+ +YAI K Y H +Q +C+ +L Sbjct: 80 LWKEYGKADTRWLYSDPTVVSLEILTVVLDGLLALVLIYAIVKEKYYRHFVQIVLCVCEL 139 Query: 352 YGCIVYFTTAYLDG-----FNFWISPFYFWAYFIGANSSWVVIPLLIARRSW 212 YGC + F +L G + W+ Y W Y + N WV+IP L+ +SW Sbjct: 140 YGCWMTFFPEWLVGSPSLNTSSWL---YLWVYLVFFNGLWVLIPGLLLWQSW 188
>COX1B_PARDE (P98002) Cytochrome c oxidase subunit 1-beta (EC 1.9.3.1)| (Cytochrome c oxidase polypeptide I-beta) (Cytochrome aa3 subunit 1-beta) Length = 558 Score = 33.5 bits (75), Expect = 0.38 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%) Frame = -2 Query: 472 TVEGITAVLEGPASLLAVYAIASRKSYSHILQF--AVCLGQLYGCI--VYFTTAYLDGFN 305 TV G+T V+ A L VY +Y + F + LG ++G VY+ + G Sbjct: 384 TVGGVTGVVLSQAPLDRVY----HDTYYVVAHFHYVMSLGAVFGIFAGVYYWIGKMSGRQ 439 Query: 304 F--WISPFYFWAYFIGAN 257 + W +FW FIG+N Sbjct: 440 YPEWAGQLHFWMMFIGSN 457
>COX1_RHOSH (P33517) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Cytochrome aa3 subunit 1) Length = 566 Score = 33.5 bits (75), Expect = 0.38 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%) Frame = -2 Query: 472 TVEGITAVLEGPASLLAVYAIASRKSYSHILQF--AVCLGQLYGCI--VYFTTAYLDGFN 305 TV G+T ++ AS+ Y +Y + F + LG ++G +YF + G Sbjct: 392 TVGGVTGIVLSQASVDRYY----HDTYYVVAHFHYVMSLGAVFGIFAGIYFWIGKMSGRQ 447 Query: 304 F--WISPFYFWAYFIGAN 257 + W +FW F+GAN Sbjct: 448 YPEWAGKLHFWMMFVGAN 465
>MPPB_HUMAN (O75439) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52) Length = 489 Score = 31.2 bits (69), Expect = 1.9 Identities = 18/72 (25%), Positives = 31/72 (43%) Frame = -2 Query: 367 CLGQLYGCIVYFTTAYLDGFNFWISPFYFWAYFIGANSSWVVIPLLIARRSWNKICAAVH 188 C G L F T+Y D W ++ SS V L + ++ W ++C +V Sbjct: 342 CHGNLCHSFQSFNTSYTDTG--------LWGLYMVCESSTVADMLHVVQKEWMRLCTSVT 393 Query: 187 QSEKVKTK*FLQ 152 +SE + + L+ Sbjct: 394 ESEVARARNLLK 405
>COX1A_PARDE (P08305) Cytochrome c oxidase subunit 1-alpha (EC 1.9.3.1)| (Cytochrome c oxidase polypeptide I-alpha) (Cytochrome aa3 subunit 1-alpha) Length = 554 Score = 31.2 bits (69), Expect = 1.9 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Frame = -2 Query: 472 TVEGITAVLEGPASLLAVYAIASRKSYSHILQF--AVCLGQLYGCIV--YFTTAYLDGFN 305 TV G+T V+ SL VY +Y + F + LG L+ Y+ + G Sbjct: 379 TVGGVTGVVIAQGSLDRVY----HDTYYIVAHFHYVMSLGALFAIFAGTYYWIGKMSGRQ 434 Query: 304 F--WISPFYFWAYFIGAN 257 + W +FW FIG+N Sbjct: 435 YPEWAGQLHFWMMFIGSN 452
>CHCH6_MOUSE (Q91VN4) Coiled-coil-helix-coiled-coil-helix domain-containing| protein 6 Length = 273 Score = 30.8 bits (68), Expect = 2.5 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 371 RELEDMAVRLARCDRIDREQRGR 439 RELED L+RCD +EQ+GR Sbjct: 177 RELEDREAELSRCDTFYKEQQGR 199
>MPPB_RAT (Q03346) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52) Length = 489 Score = 29.6 bits (65), Expect = 5.5 Identities = 18/72 (25%), Positives = 29/72 (40%) Frame = -2 Query: 367 CLGQLYGCIVYFTTAYLDGFNFWISPFYFWAYFIGANSSWVVIPLLIARRSWNKICAAVH 188 C G L F T+Y D W ++ + V L ++ W ++C AV Sbjct: 342 CHGNLCHSFQSFNTSYTDTG--------LWGLYMVCEQATVADMLHAVQKEWMRLCTAVS 393 Query: 187 QSEKVKTK*FLQ 152 +SE + K L+ Sbjct: 394 ESEVARAKNLLK 405
>MPPB_PONPY (Q5REK3) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) Length = 489 Score = 29.3 bits (64), Expect = 7.2 Identities = 17/72 (23%), Positives = 30/72 (41%) Frame = -2 Query: 367 CLGQLYGCIVYFTTAYLDGFNFWISPFYFWAYFIGANSSWVVIPLLIARRSWNKICAAVH 188 C G L F T+Y D W ++ S V L + ++ W ++C +V Sbjct: 342 CHGNLCHSFQSFNTSYTDTG--------LWGLYMVCEPSTVADMLHVVQKEWMRLCTSVT 393 Query: 187 QSEKVKTK*FLQ 152 +SE + + L+ Sbjct: 394 ESEVARARNLLK 405
>YGGF_ECOLI (P21437) Hypothetical protein yggF| Length = 321 Score = 29.3 bits (64), Expect = 7.2 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = -2 Query: 532 VWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSYSH 386 + +E KGD V D A +EG V G ++ LAV A A R S H Sbjct: 67 IGEEVGKGDGPEV--DIAVDPIEGTRMVAMGQSNALAVMAFAPRDSLLH 113
>MPPB_BOVIN (Q3SZ71) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) Length = 490 Score = 29.3 bits (64), Expect = 7.2 Identities = 17/72 (23%), Positives = 30/72 (41%) Frame = -2 Query: 367 CLGQLYGCIVYFTTAYLDGFNFWISPFYFWAYFIGANSSWVVIPLLIARRSWNKICAAVH 188 C G L F T+Y D W ++ + V L + ++ W ++C +V Sbjct: 343 CHGNLCHSFQSFNTSYTDTG--------LWGIYMVCEPATVADMLHVVQKEWMRLCTSVT 394 Query: 187 QSEKVKTK*FLQ 152 +SE + K L+ Sbjct: 395 ESEVARAKNLLK 406
>KUP2_RALSO (Q8XYY5) Probable potassium transport system protein kup 2| Length = 633 Score = 29.3 bits (64), Expect = 7.2 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = -2 Query: 481 ATVTVEGITAVLEGPASLLAV---YAIASRKSYSHILQFAVCLGQLYGCIVYFTTAYLDG 311 A + G+ +++ P L+AV YAIA + H LQ V LG ++ + Y D Sbjct: 188 AALAALGLVNLMKAPQILVAVNPVYAIAFL--HEHALQAFVVLGSVFLVLTGAEALYADM 245 Query: 310 FNFWISPFYFWAYFIGANS 254 +F P + +FI A S Sbjct: 246 GHFGARPIRWGWFFIVAPS 264
>COX1_SCHPO (P07657) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) Length = 537 Score = 28.9 bits (63), Expect = 9.3 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Frame = -2 Query: 472 TVEGITAVLEGPASLLAVYAIASRKSYSHILQF--AVCLGQLYG-CIVYFTTAYLDG--F 308 T+ G+T V+ + V IA +Y + F + +G L+G C Y+ + + G + Sbjct: 356 TIGGLTGVILSNS----VLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYYWSPKMFGLMY 411 Query: 307 NFWISPFYFWAYFIGAN 257 N ++ FW FIG N Sbjct: 412 NETLASIQFWILFIGVN 428
>NU2M_LOCMI (Q36426) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 342 Score = 28.9 bits (63), Expect = 9.3 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -2 Query: 295 SPFYFWAYFIGANSSWVVIPLLIARRSWNKICAAVHQSEKVKTK*FL 155 +PF+FW + +++SW+ +L+ +W KI + S +K FL Sbjct: 107 APFHFWLPEVMSSTSWINCLMLM---TWQKIAPMMTMSYCIKMSSFL 150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,170,654 Number of Sequences: 219361 Number of extensions: 1273595 Number of successful extensions: 3916 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3797 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3908 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
