>YSP4_CAEEL (Q10912) Hypothetical protein B0034.4|
          Length = 216

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 27  YANTTVPNHPSTQAQSPRHLIQNHAYDTIHTKRLTRAQHNQHKSSLPPGQFNEK---TMH 197
           YAN  +   P T  +   H   NH       K + R    +H+++L PG+ N+K   T+H
Sbjct: 129 YANELLTEKPLTDTEPELHP-DNHVVKAKSPKPVARTPTARHRNALKPGKINDKSDDTLH 187

Query: 198 N 200
           +
Sbjct: 188 D 188

>CCNT1_PANTR (Q8HXN7) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 725

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
 Frame = +1

Query: 34  TRPSQTIHPHKHNHHAT*YKIMPTILSTPNVSP------------VHNTTSIKAPFLLGS 177
           T PS   H H HNHH+  +      + T N  P             H T S+ + F   S
Sbjct: 511 THPSN--HHHHHNHHSHKHSHSQLPVGTGNKRPGDPKHSSQTSNLAHKTYSLSSSFSSSS 568

Query: 178 STRKQCTTAST 210
           STRK+  +  T
Sbjct: 569 STRKRGPSEET 579

>CCNT1_HUMAN (O60563) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 726

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
 Frame = +1

Query: 34  TRPSQTIHPHKHNHHAT*YKIMPTILSTPNVSP------------VHNTTSIKAPFLLGS 177
           T PS   H H HNHH+  +      + T N  P             H T S+ + F   S
Sbjct: 512 THPSN--HHHHHNHHSHKHSHSQLPVGTGNKRPGDPKHSSQTSNLAHKTYSLSSSFSSSS 569

Query: 178 STRKQCTTAST 210
           STRK+  +  T
Sbjct: 570 STRKRGPSEET 580

>FEP1_SCHPO (Q10134) Iron-sensing transcription factor 1 (Transcription factor|
           gaf2) (Gaf-2)
          Length = 564

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +3

Query: 36  TTVPNHPSTQA-----QSPRHLIQNHAYDTIHTKRLTRAQHNQHKSSLPPGQFNEKTMHN 200
           ++VP+   T+A     +S   ++ +   +T +     R+ HNQH+ S PP + +     N
Sbjct: 115 SSVPSSTETKASPTPLESKPQIVSDTTTETSNGTSRRRSSHNQHEDSSPPHEPSVTFCQN 174

Query: 201 C 203
           C
Sbjct: 175 C 175

>IST2_YEAST (P38250) Increased sodium tolerance protein 2|
          Length = 946

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 1   SLRPYQNKNTPTRPSQTIHPHKHNHH 78
           S RP  N  T T  +    PH H+HH
Sbjct: 876 SARPSNNNTTTTTTTDATQPHHHHHH 901

>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 27  YANTTVPNHPSTQAQSPRHLIQNHAYDTIHTKRLTRAQHNQHKS 158
           Y N     H + Q Q  +H  Q HA    H   + +AQH+ H S
Sbjct: 8   YLNPYAQQHQAQQQQHAQH--QQHAQQQQHHLHMQQAQHHLHLS 49

>CCNT1_HORSE (Q9XT26) Cyclin-T1 (Cyclin-T) (CycT1)|
          Length = 727

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
 Frame = +1

Query: 34  TRPSQTIHPHKHNHHAT*YKIMPTILSTPNVSP------------VHNTTSIKAPFLLGS 177
           T PS   H H HNHH+  +        T N  P             H T S+ + F   S
Sbjct: 514 THPSN--HHHHHNHHSHKHSHSQLPAGTGNKRPGDPKHSSQTSTLAHKTYSLSSSFSSSS 571

Query: 178 STRKQ 192
           S+RK+
Sbjct: 572 SSRKR 576

>Y540_ARCFU (O29710) Hypothetical protein AF0540 precursor|
          Length = 228

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 147 QHKSSLPPGQFNEKTMHNCI 206
           Q+ S+LPPG++  K  H+C+
Sbjct: 43  QNSSTLPPGEYGIKITHSCL 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,347,501
Number of Sequences: 219361
Number of extensions: 748814
Number of successful extensions: 2676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2653
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)