>gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 from the MHC region,
             complete sequence
          Length = 161729

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 56    atccacacaagcacaatcaccac 78
             |||||||||||||||||||||||
Sbjct: 52144 atccacacaagcacaatcaccac 52166

>gb|AC123952.5| Mus musculus BAC clone RP23-195B3 from chromosome 5, complete
            sequence
          Length = 191582

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 195  cacaactgcatccaccaactt 215
            |||||||||||||||||||||
Sbjct: 2861 cacaactgcatccaccaactt 2841

>gb|AC131679.2| Mus musculus BAC clone RP23-339I6 from chromosome 5, complete sequence
          Length = 198890

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 195    cacaactgcatccaccaactt 215
              |||||||||||||||||||||
Sbjct: 155931 cacaactgcatccaccaactt 155911

>dbj|AB168804.1| Macaca fascicularis testis cDNA, clone: QtsA-14944, similar to
           human hypothetical protein FLJ33979 (FLJ33979), mRNA,
           RefSeq: NM_152636.1
          Length = 1907

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 187 aaacaatgcacaactgcatccacca 211
           ||||||||||||||| |||||||||
Sbjct: 628 aaacaatgcacaacttcatccacca 604

>ref|XM_392852.2| PREDICTED: Apis mellifera similar to GA18114-PA (LOC409336), mRNA
          Length = 1692

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 80  ccacctgatacaaaatcatgc 100
           |||||||||||||||||||||
Sbjct: 292 ccacctgatacaaaatcatgc 312

>gb|AC117480.9| Homo sapiens 3 BAC RP11-491D10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 115257

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 206  ccaccaacttctactgctgct 226
            |||||||||||||||||||||
Sbjct: 3195 ccaccaacttctactgctgct 3215

>gb|AC073347.3| Homo sapiens BAC clone RP11-775L16 from 7, complete sequence
          Length = 197144

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    cccttcctcctgggcagttc 179
              ||||||||||||||||||||
Sbjct: 100796 cccttcctcctgggcagttc 100815

>gb|AC142291.1| Pan troglodytes BAC clone RP43-184P18 from 7, complete sequence
          Length = 152668

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    cccttcctcctgggcagttc 179
              ||||||||||||||||||||
Sbjct: 108421 cccttcctcctgggcagttc 108440

>gb|AC117461.3| Homo sapiens 3 BAC RP11-346H19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 154870

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 4     ttgagaccataccagaataagaat 27
             ||||||||| ||||||||||||||
Sbjct: 44625 ttgagaccaaaccagaataagaat 44648

>gb|AC123982.10| Pan troglodytes clone rp43-39b11, complete sequence
          Length = 186239

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    caaaccatccatccacacaa 65
             ||||||||||||||||||||
Sbjct: 45447 caaaccatccatccacacaa 45428

>gb|AC025588.1|AC025588 Homo sapiens chromosome 19, BAC CIT-HSPC_360J11 (BC288669), complete
             sequence
          Length = 145122

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    caaaccatccatccacacaa 65
             ||||||||||||||||||||
Sbjct: 79669 caaaccatccatccacacaa 79650

>emb|AJ334295.1|HSA334295 Homo sapiens genomic sequence surrounding NotI site, clone NR1-DN8R
          Length = 759

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 157 gctcccttcctcctgggcag 176
           ||||||||||||||||||||
Sbjct: 57  gctcccttcctcctgggcag 76

>gb|AC145926.4| Gallus gallus BAC clone CH261-29I12 from chromosome unknown, complete
              sequence
          Length = 224974

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    aaccagcataaaagctccct 163
              ||||||||||||||||||||
Sbjct: 173640 aaccagcataaaagctccct 173659

>emb|AL672184.13| Mouse DNA sequence from clone RP23-421G11 on chromosome X, complete
            sequence
          Length = 211206

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 80   ccacctgatacaaaatcatg 99
            ||||||||||||||||||||
Sbjct: 9526 ccacctgatacaaaatcatg 9507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,158,942
Number of Sequences: 3902068
Number of extensions: 2158942
Number of successful extensions: 33253
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33235
Number of HSP's gapped (non-prelim): 18
length of query: 229
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 207
effective length of database: 17,147,199,772
effective search space: 3549470352804
effective search space used: 3549470352804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)