>DHX57_HUMAN (Q6P158) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)|
           (DEAH box protein 57)
          Length = 1386

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 344 SDHMKNGLCCEQFDKKIFEEWVRSILKARKDLEILENRNAL 222
           S H +NG  C+QF  K      +SIL+ R+ L   E R  +
Sbjct: 513 SVHAENGKICKQFRMKQASRQFQSILQERQSLPAWEERETI 553

>Y1586_HAEIN (P44263) Hypothetical protein HI1586|
          Length = 519

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
 Frame = -1

Query: 395 DMNDNMFIMIQLMEFLISDHMKNGLCCEQFDKKIFEEWVRSILKARKDLEILENRNALYV 216
           ++N NM I++    FL+   +   L       + F EW +S +K R+  ++L   + ++V
Sbjct: 82  EINSNMNIVL----FLLLLGVLTALLTVSGSNRAFAEWAQSRIKGRRGAKLLA-ASLVFV 136

Query: 215 VYIE-----RVVGRLAREVAS--AAHQGKLD--LDVFSKLLC*SLPASDLKMY 84
            +I+       VG +AR V       + KL   LD  +  +C  +P S    Y
Sbjct: 137 TFIDDYFHSLAVGAIARPVTDRFKVSRAKLAYILDSTAAPMCVMMPVSSWGAY 189

>KLF1_MOUSE (P46099) Krueppel-like factor 1 (Erythroid krueppel-like|
           transcription factor) (EKLF) (Erythroid transcription
           factor)
          Length = 358

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 140 PGPASPGEQQKPPLSPTFRPLAQCTPHTAHFCFLGFPG 253
           PG  SPG  +   L+P+  P+AQ  P  +   + G PG
Sbjct: 83  PGSESPGTSRTCALAPSVGPVAQFEPPESLGAYAGGPG 120

>DNJ10_ARATH (Q8GYX8) Chaperone protein dnaJ 10 (AtJ10) (AtDjC10)|
          Length = 398

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 314 EQFDKKIFEEWVRSILKARKD--LEILENRNALYVVYIERVVGRLAREVA 171
           +QFD K  +E +R + K R+D   +IL++R   YV+  +  +     EVA
Sbjct: 118 DQFDTKKIQEKLRIVQKEREDKLAQILKDRLNEYVINKDEFISNAEAEVA 167

>RNS2_NICAL (P04007) Ribonuclease S-2 precursor (EC 3.1.27.1) (Stylar|
           glycoprotein 2) (S2-RNase)
          Length = 214

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 410 DDSFPDMNDNMFIMIQLMEFLISDHMKNGLCC-EQFDKK 297
           D+ +PD+    F  +    F   +++K+G CC ++FD++
Sbjct: 86  DERWPDLTKTKFDSLDKQAFWKDEYVKHGTCCSDKFDRE 124

>YMF28_MARPO (P38470) Hypothetical 16.2 kDa protein in NAD3-NAD7 intergenic|
           region (ORF 139)
          Length = 139

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 210 H*ASGRKVGE--RGGFCCSPGEAGPGCLFQTSVLITSSLRLENVLLTSYLTALFPVRFYS 37
           H  SG +  E   GG+C +P   G G   Q SVL    +R+ ++ L   + A +P  F+S
Sbjct: 70  HFVSGARPREWFLGGWCSTPRHIGIG---QHSVLANRGVRILSLFLFFEVLAYYPFGFFS 126

>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
 Frame = +2

Query: 23  ISKFLE*KRTGKRAVK*LVSNTFSSLRLEVISTEVWKRHPGPASPGEQQKPPLSPTFRPL 202
           +SKF   + +G+   K     T    R++  +  V    PGP  PG +Q  P  P   P 
Sbjct: 289 VSKFCRGEASGRGGAKTAGLRTIGPPRMKQPALLV--HTPGPKMPGPRQPAPKRPPPGPC 346

Query: 203 AQCTP--HTAHFCFLGF----PGPC 259
            +C    H A  C        PGPC
Sbjct: 347 YRCLKEGHWARDCPTKATGPPPGPC 371

>Y067_MYCGE (P47313) Hypothetical lipoprotein MG067 precursor|
          Length = 516

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 305 DKKIFEEWVRSILKARKDLEILEN 234
           D KI++EW+R  ++A K+L  +EN
Sbjct: 258 DAKIYQEWIRPAVQAYKELGDVEN 281

>RAD50_CAEEL (O44199) DNA repair protein rad-50 (EC 3.6.-.-)|
          Length = 1298

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 356 EFLISDHMKNGLCCEQFD-KKIFEEWVRSILKARKDLEILENRNALYVVYIERVVGRLAR 180
           E  +S+++     CE  +  +  E   + + KARKDL  L  ++ LY  YIE        
Sbjct: 607 ELKLSENIFEACSCEAEEVSEKLENLRKRLKKARKDLAPLSAKSNLYDSYIEESKSSGCC 666

Query: 179 EVASAAHQGKLDLDVFSKLL 120
            +     + K +++ FSK L
Sbjct: 667 PLCDRDFKTKKEINEFSKKL 686

>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)|
          Length = 627

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 273 YSEGTQGPGNPRKQKCAVCGVH*ASGRKVGERGGFCCSPGEAGPG 139
           Y +G QGP  P     A      A+  + G++G     PG+ GPG
Sbjct: 99  YGQGQQGPSGPGSAAAASA----AASAESGQQGPGGYGPGQQGPG 139

>ATM_DEBHA (Q6BV76) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase TEL1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2948

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 464  VSQKISNVSESLLLIDPFDDSFPDMNDNMFIMIQLMEFLISDHMKNGLCCE 312
            +S  +S V    LL D F+     M++   I+ +++ +++SD+++   C E
Sbjct: 1667 ISHIVSLVENDTLLEDTFESDISSMDN---ILNEILRYIVSDNLEIAACAE 1714

>SFR15_RAT (Q63627) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4) (Fragment)
          Length = 1048

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +2

Query: 140 PGPASPGEQQKPPLSPTFRPL--AQCTPHT--AHFCFLGFPGPCV 262
           PG   PG    PP+ PTF+P    Q  PH+   H   +    PCV
Sbjct: 295 PGMPQPGMPPTPPVQPTFQPTFQPQNEPHSQKPHQQEMEVEQPCV 339

>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch 3)|
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2319

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 128  WKRHPGPASPGEQQKPPLSPTFRPLAQCTPHTAH 229
            W R P PA PG     PL+P  + L   TP + H
Sbjct: 2173 WARLPPPAPPGPSFLLPLAPGSQLLNPATPVSPH 2206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,906,929
Number of Sequences: 219361
Number of extensions: 1523850
Number of successful extensions: 4806
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4801
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)