Clone Information

BLAST Search Result

Clone Name	rbart10d12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY109236.1\| Zea mays PCO143837 mRNA sequence	230	3e-57
2	ref\|XM_483731.1\| Oryza sativa (japonica cultivar-group), mRNA	147	4e-32
3	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	147	4e-32
4	dbj\|AP005480.2\| Oryza sativa (japonica cultivar-group) genomic D...	147	4e-32
5	dbj\|AP003928.3\| Oryza sativa (japonica cultivar-group) genomic D...	147	4e-32
6	gb\|DQ002408.1\| Zea mays gypsy retrotransposon huck, and copia re...	50	0.007
7	gb\|DQ002407.1\| Zea mays copia retrotransposon opie1, gypsy retro...	50	0.007
8	emb\|AL772370.7\| Human DNA sequence from clone RP11-184B10 on chr...	42	1.6
9	emb\|AL772392.4\| Human DNA sequence from clone RP11-450P7 on chro...	42	1.6
10	gb\|AC107943.4\| Homo sapiens chromosome 8, clone RP11-11I1, compl...	42	1.6
11	gb\|AC011727.16\| Homo sapiens chromosome 8, clone RP11-10H7, comp...	42	1.6
12	gb\|U73508.1\|U73508 Homo sapiens cosmid clone U112E8 from Xp22.1-...	42	1.6
13	gb\|AC144631.3\| Mus musculus BAC clone RP23-112C14 from 3, comple...	42	1.6
14	emb\|AL732321.18\| Mouse DNA sequence from clone RP23-167N17 on ch...	42	1.6
15	gb\|AC117439.5\| Homo sapiens 3 BAC RP11-183P11 (Roswell Park Canc...	42	1.6
16	gb\|AC147572.4\| Pan troglodytes BAC clone CH251-412D24 from Y, co...	40	6.5
17	ref\|NM_024727.1\| Homo sapiens leucine rich repeat containing 31 ...	40	6.5
18	gb\|AC147161.2\| Pan troglodytes BAC clone CH251-87A18 from Y, com...	40	6.5
19	gb\|AC147608.1\| Pan troglodytes BAC clone CH251-506P22 from Y, co...	40	6.5
20	gb\|AC146198.2\| Pan troglodytes BAC clone CH251-475M5 from Y, com...	40	6.5
21	gb\|AC147361.1\| Pan troglodytes BAC clone CH251-528H6 from Y, com...	40	6.5
22	gb\|AC147114.2\| Pan troglodytes BAC clone CH251-548O14 from Y, co...	40	6.5
23	emb\|CR848751.7\| Zebrafish DNA sequence from clone DKEY-165F7 in ...	40	6.5
24	gb\|AC134559.5\| Mus musculus BAC clone RP24-332C4 from chromosome...	40	6.5
25	gb\|AC125181.4\| Mus musculus BAC clone RP23-324L6 from chromosome...	40	6.5
26	gb\|AC146515.2\| Pan troglodytes BAC clone CH251-113M4 from Y, com...	40	6.5
27	gb\|AC142348.1\| Pan troglodytes BAC clone RP43-5I10 from Y, compl...	40	6.5
28	emb\|AL359474.16\| Human DNA sequence from clone RP11-747O7 on chr...	40	6.5
29	emb\|CR457482.5\| Zebrafish DNA sequence from clone CH211-159P3 in...	40	6.5
30	dbj\|BS000677.1\| Pan troglodytes chromosome Y clone: PTB-391J06, ...	40	6.5
31	dbj\|BS000543.1\| Pan troglodytes chromosome Y clone:PTB-197G21, c...	40	6.5
32	dbj\|BS000533.1\| Pan troglodytes chromosome Y clone:PTB-069G14, c...	40	6.5
33	gb\|DP000054.1\| Pan troglodytes chromosome Y, partial sequence	40	6.5
34	dbj\|AK097338.1\| Homo sapiens cDNA FLJ40019 fis, clone STOMA20064...	40	6.5
35	gb\|AC116663.1\| Rattus norvegicus, clone RP31-109I17, complete se...	40	6.5
36	gb\|AC002332.3\| Arabidopsis thaliana chromosome 2 clone F4P9 map ...	40	6.5
37	dbj\|AK132708.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	6.5
38	ref\|XM_941556.1\| PREDICTED: Homo sapiens similar to ribonuclease...	40	6.5
39	gb\|AC182810.1\| Gasterosteus aculeatus clone VMRC28-119K03, compl...	40	6.5
40	gb\|AY527733.1\| Enterococcus faecium cation efflux facilitator (c...	40	6.5
41	gb\|AC096772.3\| Homo sapiens BAC clone RP11-801F7 from 2, complet...	40	6.5
42	gb\|AC148933.3\| Pan troglodytes BAC clone CH251-571K7 from chromo...	40	6.5
43	gb\|AC069019.8\|AC069019 Mus musculus BAC RP23-455N13 (Roswell Pa...	40	6.5
44	gb\|AC078795.19\| Homo sapiens 3 BAC RP11-362K14 (Roswell Park Can...	40	6.5
45	gb\|AF248484.1\|AF248484 Homo sapiens chromosome 21 PAC 30P13 map ...	40	6.5
46	ref\|NM_001034902.1\| Mus musculus similar to empty spiracles homo...	40	6.5
47	gb\|AC009428.4\|AC009428 Homo sapiens chromosome , clone RP11-45M1...	40	6.5
48	dbj\|BS000012.1\| Pan troglodytes chromosome 22 clone:PTB-033P20, ...	40	6.5
49	dbj\|AK026912.1\| Homo sapiens cDNA: FLJ23259 fis, clone COL05779	40	6.5
50	gb\|AC007126.6\|AC007126 Homo sapiens chromosome 4 clone C0496D08,...	40	6.5
51	emb\|AL163207.2\|HS21C007 Homo sapiens chromosome 21 segment HS21C007	40	6.5
52	emb\|AL929115.9\| Zebrafish DNA sequence from clone CH211-146M13 i...	40	6.5
53	gb\|AC153373.4\| Mus musculus 6 BAC RP23-100J14 (Roswell Park Canc...	40	6.5
54	gb\|AC002366.1\|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Re...	40	6.5
55	emb\|BX284626.3\| Mouse DNA sequence from clone RP23-76P19 on chro...	40	6.5
56	gb\|AC131775.4\| Mus musculus BAC clone RP24-313O6 from 6, complet...	40	6.5
57	emb\|AL772371.3\| Mouse DNA sequence from clone RP23-234N12 on chr...	40	6.5

>gb|AY109236.1| Zea mays PCO143837 mRNA sequence
          Length = 665

 Score =  230 bits (116), Expect = 3e-57
 Identities = 304/369 (82%)
 Strand = Plus / Minus

                                                                       
Query: 114 tcagcacagaagtttggaaaagacatccaggtccagcttcccctggtgagcagcagaagc 173
           ||||||||| |||||||| || || || ||||||||||||||||| || ||||||| |||
Sbjct: 384 tcagcacagcagtttggagaaaacttctaggtccagcttcccctgatgtgcagcaggagc 325

                                                                       
Query: 174 cacctctctcgccaaccttccgaccactcgctcaatgtacaccacatacagcgcatttct 233
           ||| || || ||||||||||||||||| |||||||||||||||||||| ||| ||||  |
Sbjct: 324 cacatcccttgccaaccttccgaccacacgctcaatgtacaccacatagagcccattcat 265

                                                                       
Query: 234 gttttctaggatttccaggtccttgcgtgccttcagaatagatctgacccattcttcaaa 293
           |||||| ||||||| ||  || ||||||||||| ||||||||||||   |||||||||||
Sbjct: 264 gttttccaggatttgcaaatcattgcgtgccttgagaatagatctggtacattcttcaaa 205

                                                                       
Query: 294 tannnnnnngtcaaattgctcgcaacatagcccatttttcatgtgatcagatatgaggaa 353
            |       || ||  ||||| || ||||||| |  |||||||| |||||||||||||||
Sbjct: 204 aagtcttttgttaatatgctcacagcatagccaaactttcatgtaatcagatatgaggaa 145

                                                                       
Query: 354 ctccattaattgaatcataatgaacatattgtcattcatatcagggaaggaatcatcaaa 413
           ||| | ||| |||||||| ||||| |||||||||| |||||||||||| | |||| ||||
Sbjct: 144 ctcaagtaactgaatcatgatgaatatattgtcatgcatatcagggaaagcatcagcaaa 85

                                                                       
Query: 414 cggatctatgagaagcaagctttctgatacatttgagatcttttgagaaactgcaaggat 473
           ||||||    |  | ||| ||||| ||||| || || ||||||||||||||| |||||||
Sbjct: 84  cggatcagccaagaacaatctttcagatacgttggatatcttttgagaaactacaaggat 25

                    
Query: 474 tatccgctg 482
           || ||||||
Sbjct: 24  tacccgctg 16

to top

>ref|XM_483731.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 957

 Score =  147 bits (74), Expect = 4e-32
 Identities = 146/170 (85%)
 Strand = Plus / Minus

                                                                       
Query: 124 agtttggaaaagacatccaggtccagcttcccctggtgagcagcagaagccacctctctc 183
           |||||||| | ||| || ||||||||||||||||| |||||||||| ||| ||||| || 
Sbjct: 947 agtttggagaggacttctaggtccagcttcccctgatgagcagcaggagctacctccctt 888

                                                                       
Query: 184 gccaaccttccgaccactcgctcaatgtacaccacatacagcgcatttctgttttctagg 243
           ||||| ||||| | ||||||||||||||| |||||||||||  | |||||    ||||||
Sbjct: 887 gccaatcttccaatcactcgctcaatgtataccacatacagtccgtttctcccatctagg 828

                                                             
Query: 244 atttccaggtccttgcgtgccttcagaatagatctgacccattcttcaaa 293
           | ||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 827 acttccaagtcctttcgtgccttgagaatagatctgacccattcttcaaa 778



 Score =  125 bits (63), Expect = 1e-25
 Identities = 120/139 (86%)
 Strand = Plus / Minus

                                                                       
Query: 340 tcagatatgaggaactccattaattgaatcataatgaacatattgtcattcatatcaggg 399
           |||||||| |||||||| |||||||| |||||||| |||||||||  || ||| ||||||
Sbjct: 731 tcagatattaggaactcgattaattgtatcataataaacatattgctatgcatttcaggg 672

                                                                       
Query: 400 aaggaatcatcaaacggatctatgagaagcaagctttctgatacatttgagatcttttga 459
           ||   ||||||||| ||||||   ||||| ||  ||||||||||||||||||||||||||
Sbjct: 671 aaaccatcatcaaatggatctgccagaagtaatttttctgatacatttgagatcttttga 612

                              
Query: 460 gaaactgcaaggattatcc 478
           |||| ||||||||||||||
Sbjct: 611 gaaattgcaaggattatcc 593

to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  147 bits (74), Expect = 4e-32
 Identities = 146/170 (85%)
 Strand = Plus / Minus

                                                                            
Query: 124      agtttggaaaagacatccaggtccagcttcccctggtgagcagcagaagccacctctctc 183
                |||||||| | ||| || ||||||||||||||||| |||||||||| ||| ||||| || 
Sbjct: 27807105 agtttggagaggacttctaggtccagcttcccctgatgagcagcaggagctacctccctt 27807046

                                                                            
Query: 184      gccaaccttccgaccactcgctcaatgtacaccacatacagcgcatttctgttttctagg 243
                ||||| ||||| | ||||||||||||||| |||||||||||  | |||||    ||||||
Sbjct: 27807045 gccaatcttccaatcactcgctcaatgtataccacatacagtccgtttctcccatctagg 27806986

                                                                  
Query: 244      atttccaggtccttgcgtgccttcagaatagatctgacccattcttcaaa 293
                | ||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 27806985 acttccaagtcctttcgtgccttgagaatagatctgacccattcttcaaa 27806936



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 94/110 (85%)
 Strand = Plus / Minus

                                                                            
Query: 369      cataatgaacatattgtcattcatatcagggaaggaatcatcaaacggatctatgagaag 428
                |||||| |||||||||  || ||| ||||||||   ||||||||| ||||||   |||||
Sbjct: 27806058 cataataaacatattgctatgcatttcagggaaaccatcatcaaatggatctgccagaag 27805999

                                                                  
Query: 429      caagctttctgatacatttgagatcttttgagaaactgcaaggattatcc 478
                 ||  |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 27805998 taatttttctgatacatttgagatcttttgagaaattgcaaggattatcc 27805949

to top

>dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0439B07
          Length = 89475

 Score =  147 bits (74), Expect = 4e-32
 Identities = 146/170 (85%)
 Strand = Plus / Minus

                                                                         
Query: 124   agtttggaaaagacatccaggtccagcttcccctggtgagcagcagaagccacctctctc 183
             |||||||| | ||| || ||||||||||||||||| |||||||||| ||| ||||| || 
Sbjct: 61562 agtttggagaggacttctaggtccagcttcccctgatgagcagcaggagctacctccctt 61503

                                                                         
Query: 184   gccaaccttccgaccactcgctcaatgtacaccacatacagcgcatttctgttttctagg 243
             ||||| ||||| | ||||||||||||||| |||||||||||  | |||||    ||||||
Sbjct: 61502 gccaatcttccaatcactcgctcaatgtataccacatacagtccgtttctcccatctagg 61443

                                                               
Query: 244   atttccaggtccttgcgtgccttcagaatagatctgacccattcttcaaa 293
             | ||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 61442 acttccaagtcctttcgtgccttgagaatagatctgacccattcttcaaa 61393



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 94/110 (85%)
 Strand = Plus / Minus

                                                                         
Query: 369   cataatgaacatattgtcattcatatcagggaaggaatcatcaaacggatctatgagaag 428
             |||||| |||||||||  || ||| ||||||||   ||||||||| ||||||   |||||
Sbjct: 60515 cataataaacatattgctatgcatttcagggaaaccatcatcaaatggatctgccagaag 60456

                                                               
Query: 429   caagctttctgatacatttgagatcttttgagaaactgcaaggattatcc 478
              ||  |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 60455 taatttttctgatacatttgagatcttttgagaaattgcaaggattatcc 60406

to top

>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1150_A11
          Length = 142010

 Score =  147 bits (74), Expect = 4e-32
 Identities = 146/170 (85%)
 Strand = Plus / Minus

                                                                         
Query: 124   agtttggaaaagacatccaggtccagcttcccctggtgagcagcagaagccacctctctc 183
             |||||||| | ||| || ||||||||||||||||| |||||||||| ||| ||||| || 
Sbjct: 15183 agtttggagaggacttctaggtccagcttcccctgatgagcagcaggagctacctccctt 15124

                                                                         
Query: 184   gccaaccttccgaccactcgctcaatgtacaccacatacagcgcatttctgttttctagg 243
             ||||| ||||| | ||||||||||||||| |||||||||||  | |||||    ||||||
Sbjct: 15123 gccaatcttccaatcactcgctcaatgtataccacatacagtccgtttctcccatctagg 15064

                                                               
Query: 244   atttccaggtccttgcgtgccttcagaatagatctgacccattcttcaaa 293
             | ||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 15063 acttccaagtcctttcgtgccttgagaatagatctgacccattcttcaaa 15014



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 94/110 (85%)
 Strand = Plus / Minus

                                                                         
Query: 369   cataatgaacatattgtcattcatatcagggaaggaatcatcaaacggatctatgagaag 428
             |||||| |||||||||  || ||| ||||||||   ||||||||| ||||||   |||||
Sbjct: 14136 cataataaacatattgctatgcatttcagggaaaccatcatcaaatggatctgccagaag 14077

                                                               
Query: 429   caagctttctgatacatttgagatcttttgagaaactgcaaggattatcc 478
              ||  |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 14076 taatttttctgatacatttgagatcttttgagaaattgcaaggattatcc 14027

to top

>gb|DQ002408.1| Zea mays gypsy retrotransposon huck, and copia retrotransposon ji,
             complete sequence; and helitron Mo17_14594, complete
             sequence
          Length = 57607

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                         
Query: 379   atattgtcattcatatcagggaaggaatcatcaaacggatctatgagaagcaagctttct 438
             ||||||| || |||||| ||||| | || |||||||||||| |  |  ||||| ||||  
Sbjct: 52792 atattgttatgcatatcggggaaagcattatcaaacggatcaaccaatagcaatctttta 52733

                                                  
Query: 439   gatacatttgagatcttttgagaaactgcaaggatta 475
             || | |||||||||||||||||||||| |||| ||||
Sbjct: 52732 gacatatttgagatcttttgagaaactacaagaatta 52696

to top

>gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1,
             xilon1 retrotransposon, helitron B73_14578, gypsy
             retrotransposon huck1 and ruda retrotransposon, complete
             sequence
          Length = 152384

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 79/97 (81%)
 Strand = Plus / Minus

                                                                         
Query: 379   atattgtcattcatatcagggaaggaatcatcaaacggatctatgagaagcaagctttct 438
             ||||||| || |||||| ||||| | || |||||||||||| |  |  ||||| ||||  
Sbjct: 99549 atattgttatgcatatcggggaaagcattatcaaacggatcaaccaatagcaatctttta 99490

                                                  
Query: 439   gatacatttgagatcttttgagaaactgcaaggatta 475
             || | |||||||||||||||||||||| |||| ||||
Sbjct: 99489 gacatatttgagatcttttgagaaactacaagaatta 99453

to top

>emb|AL772370.7| Human DNA sequence from clone RP11-184B10 on chromosome X Contains
            the 5' end of the SMPX gene for X-linked small muscle
            protein, complete sequence
          Length = 104749

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 432  gctttctgatacatttgagat 452
            |||||||||||||||||||||
Sbjct: 1099 gctttctgatacatttgagat 1119

to top

>emb|AL772392.4| Human DNA sequence from clone RP11-450P7 on chromosome X Contains the 3'
              end of the CNK2 gene for connector enhancer of KSR2
              (KIAA0902), gene FLJ34960, 3' end of the SMPX gene for
              X-linked small muscle protein and a CpG island, complete
              sequence
          Length = 124186

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 432    gctttctgatacatttgagat 452
              |||||||||||||||||||||
Sbjct: 123285 gctttctgatacatttgagat 123305

to top

>gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, complete sequence
          Length = 195110

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 150   cttcccctggtgagcagcagaagcc 174
             ||||||||||||||| |||||||||
Sbjct: 47385 cttcccctggtgagctgcagaagcc 47361

to top

>gb|AC011727.16| Homo sapiens chromosome 8, clone RP11-10H7, complete sequence
          Length = 152530

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 150    cttcccctggtgagcagcagaagcc 174
              ||||||||||||||| |||||||||
Sbjct: 116666 cttcccctggtgagctgcagaagcc 116642

to top

>gb|U73508.1|U73508 Homo sapiens cosmid clone U112E8 from Xp22.1-22.2, complete sequence
          Length = 36503

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 432   gctttctgatacatttgagat 452
             |||||||||||||||||||||
Sbjct: 26717 gctttctgatacatttgagat 26737

to top

>gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, complete sequence
          Length = 179548

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    cagaagtttggaaaagacatc 140
              |||||||||||||||||||||
Sbjct: 118836 cagaagtttggaaaagacatc 118816

to top

>emb|AL732321.18| Mouse DNA sequence from clone RP23-167N17 on chromosome X, complete
             sequence
          Length = 216244

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 275   atctgacccattcttcaaata 295
             |||||||||||||||||||||
Sbjct: 10588 atctgacccattcttcaaata 10568

to top

>gb|AC117439.5| Homo sapiens 3 BAC RP11-183P11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172676

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 362    attgaatcataatgaacatat 382
              |||||||||||||||||||||
Sbjct: 103398 attgaatcataatgaacatat 103418

to top

>gb|AC147572.4| Pan troglodytes BAC clone CH251-412D24 from Y, complete sequence
          Length = 166356

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    cagcgcatttctgttttcta 241
              ||||||||||||||||||||
Sbjct: 124496 cagcgcatttctgttttcta 124477

to top

>ref|NM_024727.1| Homo sapiens leucine rich repeat containing 31 (LRRC31), mRNA
          Length = 2400

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 tttctgttttctaggatttc 248
           ||||||||||||||||||||
Sbjct: 78  tttctgttttctaggatttc 59

to top

>gb|AC147161.2| Pan troglodytes BAC clone CH251-87A18 from Y, complete sequence
          Length = 183477

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   cagcgcatttctgttttcta 241
             ||||||||||||||||||||
Sbjct: 11000 cagcgcatttctgttttcta 10981

to top

>gb|AC147608.1| Pan troglodytes BAC clone CH251-506P22 from Y, complete sequence
          Length = 195158

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   cagcgcatttctgttttcta 241
             ||||||||||||||||||||
Sbjct: 27961 cagcgcatttctgttttcta 27980

to top

>gb|AC146198.2| Pan troglodytes BAC clone CH251-475M5 from Y, complete sequence
          Length = 220557

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    cagcgcatttctgttttcta 241
              ||||||||||||||||||||
Sbjct: 185169 cagcgcatttctgttttcta 185188

to top

>gb|AC147361.1| Pan troglodytes BAC clone CH251-528H6 from Y, complete sequence
          Length = 169760

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   cagcgcatttctgttttcta 241
             ||||||||||||||||||||
Sbjct: 35362 cagcgcatttctgttttcta 35343

to top

>gb|AC147114.2| Pan troglodytes BAC clone CH251-548O14 from Y, complete sequence
          Length = 229006

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   cagcgcatttctgttttcta 241
             ||||||||||||||||||||
Sbjct: 60479 cagcgcatttctgttttcta 60460

to top

>emb|CR848751.7| Zebrafish DNA sequence from clone DKEY-165F7 in linkage group 15,
             complete sequence
          Length = 19197

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    taatacattttcaagtctga 101
             ||||||||||||||||||||
Sbjct: 17578 taatacattttcaagtctga 17597

to top

>gb|AC134559.5| Mus musculus BAC clone RP24-332C4 from chromosome 8, complete sequence
          Length = 180692

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     agatttattagcaaatttct 36
              ||||||||||||||||||||
Sbjct: 165465 agatttattagcaaatttct 165446

to top

>gb|AC125181.4| Mus musculus BAC clone RP23-324L6 from chromosome 8, complete sequence
          Length = 223306

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    agatttattagcaaatttct 36
             ||||||||||||||||||||
Sbjct: 42952 agatttattagcaaatttct 42933

to top

>gb|AC146515.2| Pan troglodytes BAC clone CH251-113M4 from Y, complete sequence
          Length = 183460

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   cagcgcatttctgttttcta 241
             ||||||||||||||||||||
Sbjct: 79689 cagcgcatttctgttttcta 79708

to top

>gb|AC142348.1| Pan troglodytes BAC clone RP43-5I10 from Y, complete sequence
          Length = 183293

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    cagcgcatttctgttttcta 241
              ||||||||||||||||||||
Sbjct: 167514 cagcgcatttctgttttcta 167495

to top

>emb|AL359474.16| Human DNA sequence from clone RP11-747O7 on chromosome 6, complete
             sequence
          Length = 129451

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    gagtaatacattttcaagtc 98
             ||||||||||||||||||||
Sbjct: 26070 gagtaatacattttcaagtc 26051

to top

>emb|CR457482.5| Zebrafish DNA sequence from clone CH211-159P3 in linkage group 15,
           complete sequence
          Length = 158288

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  taatacattttcaagtctga 101
           ||||||||||||||||||||
Sbjct: 381 taatacattttcaagtctga 400

to top

>dbj|BS000677.1| Pan troglodytes chromosome Y clone: PTB-391J06, complete sequence
          Length = 171013

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   cagcgcatttctgttttcta 241
             ||||||||||||||||||||
Sbjct: 69457 cagcgcatttctgttttcta 69476

to top

>dbj|BS000543.1| Pan troglodytes chromosome Y clone:PTB-197G21, complete sequences
          Length = 154247

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  cagcgcatttctgttttcta 241
            ||||||||||||||||||||
Sbjct: 7079 cagcgcatttctgttttcta 7060

to top

>dbj|BS000533.1| Pan troglodytes chromosome Y clone:PTB-069G14, complete sequences
          Length = 136700

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  cagcgcatttctgttttcta 241
            ||||||||||||||||||||
Sbjct: 7089 cagcgcatttctgttttcta 7070

to top

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 222      cagcgcatttctgttttcta 241
                ||||||||||||||||||||
Sbjct: 11497490 cagcgcatttctgttttcta 11497509



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 222      cagcgcatttctgttttcta 241
                ||||||||||||||||||||
Sbjct: 10687977 cagcgcatttctgttttcta 10687958



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     cagcgcatttctgttttcta 241
               ||||||||||||||||||||
Sbjct: 3599007 cagcgcatttctgttttcta 3599026



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 222     cagcgcatttctgttttcta 241
               ||||||||||||||||||||
Sbjct: 2719230 cagcgcatttctgttttcta 2719211

to top

>dbj|AK097338.1| Homo sapiens cDNA FLJ40019 fis, clone STOMA2006447, weakly similar
           to PLACENTAL RIBONUCLEASE INHIBITOR
          Length = 1578

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 tttctgttttctaggatttc 248
           ||||||||||||||||||||
Sbjct: 31  tttctgttttctaggatttc 12

to top

>gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete sequence
          Length = 165658

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 26   agcaaatttctggagtaaaa 45
            ||||||||||||||||||||
Sbjct: 8701 agcaaatttctggagtaaaa 8720

to top

>gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete
             sequence
          Length = 152593

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    aatagatttattagcaaatt 33
             ||||||||||||||||||||
Sbjct: 12069 aatagatttattagcaaatt 12088

to top

>dbj|AK132708.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4922501A19 product:hypothetical protein,
            full insert sequence
          Length = 4642

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 141  caggtccagcttcccctggt 160
            ||||||||||||||||||||
Sbjct: 2835 caggtccagcttcccctggt 2816

to top

>ref|XM_941556.1| PREDICTED: Homo sapiens similar to ribonuclease/angiogenin
           inhibitor 1 (LOC652190), mRNA
          Length = 1710

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 tttctgttttctaggatttc 248
           ||||||||||||||||||||
Sbjct: 221 tttctgttttctaggatttc 202

to top

>gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, complete sequence
          Length = 131913

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   atgtacaccacatacagcgc 227
             ||||||||||||||||||||
Sbjct: 67405 atgtacaccacatacagcgc 67386

to top

>gb|AY527733.1| Enterococcus faecium cation efflux facilitator (czcD),
           ArsR/SmtB-like transcriptional regulator (czcR), and
           P-type ATPase cation exporter (cadA) genes, complete cds
          Length = 4062

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 39  agtaaaaacgaactggaaaaaggg 62
           |||||| |||||||||||||||||
Sbjct: 182 agtaaagacgaactggaaaaaggg 159

to top

>gb|AC096772.3| Homo sapiens BAC clone RP11-801F7 from 2, complete sequence
          Length = 177733

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    acatattgtcattcatatca 396
              ||||||||||||||||||||
Sbjct: 105164 acatattgtcattcatatca 105183

to top

>gb|AC148933.3| Pan troglodytes BAC clone CH251-571K7 from chromosome y, complete
              sequence
          Length = 171231

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    cagcgcatttctgttttcta 241
              ||||||||||||||||||||
Sbjct: 168099 cagcgcatttctgttttcta 168080

to top

>gb|AC069019.8|AC069019 Mus musculus  BAC RP23-455N13 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 196175

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     taatacattttcaagtctga 101
              ||||||||||||||||||||
Sbjct: 156635 taatacattttcaagtctga 156616

to top

>gb|AC078795.19| Homo sapiens 3 BAC RP11-362K14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125445

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   tttctgttttctaggatttc 248
             ||||||||||||||||||||
Sbjct: 30698 tttctgttttctaggatttc 30679

to top

>gb|AF248484.1|AF248484 Homo sapiens chromosome 21 PAC 30P13 map 21q11.2, complete sequence,
             containing gene for nuclear factor RIP140
          Length = 148131

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 229   tttctgttttctaggatttccagg 252
             |||||| |||||||||||||||||
Sbjct: 12467 tttctggtttctaggatttccagg 12444

to top

>ref|NM_001034902.1| Mus musculus similar to empty spiracles homolog 1 (LOC545861), mRNA
          Length = 4642

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 141  caggtccagcttcccctggt 160
            ||||||||||||||||||||
Sbjct: 2835 caggtccagcttcccctggt 2816

to top

>gb|AC009428.4|AC009428 Homo sapiens chromosome , clone RP11-45M12, complete sequence
          Length = 167172

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   gaagtttggaaaagacatcc 141
             ||||||||||||||||||||
Sbjct: 57803 gaagtttggaaaagacatcc 57822

to top

>dbj|BS000012.1| Pan troglodytes chromosome 22 clone:PTB-033P20, map 22, complete
             sequences
          Length = 53422

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 229   tttctgttttctaggatttccagg 252
             |||||| |||||||||||||||||
Sbjct: 23784 tttctggtttctaggatttccagg 23761

to top

>dbj|AK026912.1| Homo sapiens cDNA: FLJ23259 fis, clone COL05779
          Length = 2400

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 tttctgttttctaggatttc 248
           ||||||||||||||||||||
Sbjct: 78  tttctgttttctaggatttc 59

to top

>gb|AC007126.6|AC007126 Homo sapiens chromosome 4 clone C0496D08, complete sequence
          Length = 218698

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   attgaatcataatgaacata 381
             ||||||||||||||||||||
Sbjct: 78894 attgaatcataatgaacata 78913

to top

>emb|AL163207.2|HS21C007 Homo sapiens chromosome 21 segment HS21C007
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 229    tttctgttttctaggatttccagg 252
              |||||| |||||||||||||||||
Sbjct: 194479 tttctggtttctaggatttccagg 194456

to top

>emb|AL929115.9| Zebrafish DNA sequence from clone CH211-146M13 in linkage group 7,
             complete sequence
          Length = 148315

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 18    gatttattagcaaatttctggagtaaaa 45
             |||||| |||||| ||||||||||||||
Sbjct: 80014 gatttaatagcaagtttctggagtaaaa 80041

to top

>gb|AC153373.4| Mus musculus 6 BAC RP23-100J14 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 218409

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   caggtccagcttcccctggt 160
             ||||||||||||||||||||
Sbjct: 57779 caggtccagcttcccctggt 57760

to top

>gb|AC002366.1|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Research Genetics) , PAC
             RPCI1-27C22 (from Roswell Park Cancer Center), and Cosmid
             U35B5 (from Lawrence Livermore), complete sequence
          Length = 259202

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    agggcagtcaagtaacttgt 78
             ||||||||||||||||||||
Sbjct: 49066 agggcagtcaagtaacttgt 49085

to top

>emb|BX284626.3| Mouse DNA sequence from clone RP23-76P19 on chromosome 11, complete
             sequence
          Length = 182810

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    taatacattttcaagtctga 101
             ||||||||||||||||||||
Sbjct: 58459 taatacattttcaagtctga 58478

to top

>gb|AC131775.4| Mus musculus BAC clone RP24-313O6 from 6, complete sequence
          Length = 171720

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    aaacaatagatttattagca 29
             ||||||||||||||||||||
Sbjct: 63458 aaacaatagatttattagca 63477

to top

>emb|AL772371.3| Mouse DNA sequence from clone RP23-234N12 on chromosome 4, complete
              sequence
          Length = 237282

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 86     acattttcaagtctgaggctggaa 109
              |||||||||||||||||| |||||
Sbjct: 215501 acattttcaagtctgaggatggaa 215478


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,114,191
Number of Sequences: 3902068
Number of extensions: 5114191
Number of successful extensions: 99333
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99154
Number of HSP's gapped (non-prelim): 175
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result