ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TA2R8_PAPHA (Q646G4) Taste receptor type 2 member 8 (T2R8) 29 5.5
2TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein... 29 7.2
3TIP60_DROME (Q960X4) Histone acetyltransferase Tip60 (EC 2.3.1.48) 29 7.2
4SPP2_NEUCR (Q7SBU7) Pre-mRNA-splicing factor spp-2 29 7.2
5FILA_HUMAN (P20930) Filaggrin 28 9.4

>TA2R8_PAPHA (Q646G4) Taste receptor type 2 member 8 (T2R8)|
          Length = 309

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 135 LSAFDCRVCALLFARICLVSACVVD-VRVIMYCCLY 31
           +S  DC +  L+ +RICL+S  VV+ + +++Y  +Y
Sbjct: 41  ISTIDCILTNLVISRICLISVMVVNGIVIVLYPDVY 76



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>TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein 3 (Thyroid|
           hormone receptor-associated protein complex 150 kDa
           component) (Trap150)
          Length = 955

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 75  HSLNRSAQKAEHTHGNQKQRATDTRTRRQSADHS 176
           HS  RSA+K E TH   K++    R R +S   S
Sbjct: 748 HSRERSAEKTEKTHKGSKKQKKHRRARDRSRSSS 781



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>TIP60_DROME (Q960X4) Histone acetyltransferase Tip60 (EC 2.3.1.48)|
          Length = 541

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 24  QKRIDNNT*SHGHPLHKHSLNRSAQKAEHTHGNQKQRATDT 146
           QKRI+    +HG   H H    S Q+  H H    Q  T T
Sbjct: 171 QKRINRKRKNHGGSAHGHHSLTSQQQQSHPHPTTPQTPTAT 211



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>SPP2_NEUCR (Q7SBU7) Pre-mRNA-splicing factor spp-2|
          Length = 358

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 84  NRSAQKAEHTHGNQKQRATD--TRTRRQSADHSXXXXXXXXXPWCCDE-ETAPPRW 242
           NRS  +  H + + +    D  +R+RR+S   S         P    E ETAPP+W
Sbjct: 114 NRSQDRDRHNNRSSRPSRDDDASRSRRRSTSRSRDRDHKPKDPKDLQEPETAPPKW 169



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>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 18   FRQKRIDNNT*SHGHPLHKHSLNRSAQKAEHTHGNQKQRATDTRTRRQSADHS 176
            + ++ +D +  S  H  H H+ ++    A H     +  + +TR   QS D S
Sbjct: 3773 YHEQSVDRSGHSGSH--HSHTTSQGRSDASHGQSGSRSASRETRNEEQSGDGS 3823



 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 54   HGHPLHKHSLNRSAQKAEHTHGNQKQRATDTRTRRQSADHS 176
            H    H H+ ++    A H H   +  +  TR   QS D S
Sbjct: 2487 HSGSHHSHTTSQGRSDASHGHSGSRSASRQTRNDEQSGDGS 2527


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,564,008
Number of Sequences: 219361
Number of extensions: 738312
Number of successful extensions: 2460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2454
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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