>YJZ7_YEAST (P47098) Transposon Ty1 protein B|
          Length = 1755

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 141 PIHQYLAFFFLEKQYIMPSNIYTSRIPPLHKGPSS 245
           PI QY  F+++ K+Y++PSNI    I  +H   S+
Sbjct: 556 PIVQYGDFYWVSKRYLLPSNISVPTINNVHTSEST 590

>BRO1_GIBZE (Q4IBS9) Vacuolar protein-sorting protein BRO1 (BRO domain-containing|
            protein 1)
          Length = 995

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +2

Query: 212  PYTASSQGPL*SFFRTRADTTPQTQRGRTRSGAGTSPPPSAASLAGDPQCGPRQ 373
            P   S+ G   SF    A +TPQTQ G    G    PPP      G P  GP+Q
Sbjct: 901  PPNQSTFGQSQSFGGYGASSTPQTQGGYVPPGFVPPPPP-----PGPPPLGPQQ 949

>MKRN2_HUMAN (Q9H000) Makorin-2 (RING finger protein 62)|
          Length = 416

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 473 STAGGVLGGMAEAVLPWAFRGQVPPSMYYTSPYAVADHTVGPRLRRQQMEVERSL 309
           + AGG +G MA +V   AF    PPS    S      H  G R +R  +  +R+L
Sbjct: 60  AAAGGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNL 114

>YJZ9_YEAST (P47100) Transposon Ty1 protein B|
          Length = 1755

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 141 PIHQYLAFFFLEKQYIMPSNIYTSRIPPLHKGPSS 245
           PI +Y  F+++ K+Y++PSNI    I  +H   S+
Sbjct: 556 PIVKYGDFYWVSKKYLLPSNISVPTINNVHTSEST 590

>YMU0_YEAST (Q04670) Transposon Ty1 protein B|
          Length = 1328

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 141 PIHQYLAFFFLEKQYIMPSNIYTSRIPPLHKGPSS 245
           PI +Y  F+++ K+Y++PSNI    I  +H   S+
Sbjct: 129 PIVKYGDFYWVSKKYLLPSNISVPTINNVHTSEST 163

>YMT5_YEAST (Q04214) Transposon Ty1 protein B|
          Length = 1328

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 141 PIHQYLAFFFLEKQYIMPSNIYTSRIPPLHKGPSS 245
           PI +Y  F+++ K+Y++PSNI    I  +H   S+
Sbjct: 129 PIVKYGDFYWVSKKYLLPSNISVPTINNVHTSEST 163

>YME4_YEAST (Q04711) Transposon Ty1 protein B|
          Length = 1328

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 141 PIHQYLAFFFLEKQYIMPSNIYTSRIPPLHKGPSS 245
           PI +Y  F+++ K+Y++PSNI    I  +H   S+
Sbjct: 129 PIVKYGDFYWVSKKYLLPSNISVPTINNVHTSEST 163

>YMD9_YEAST (Q03434) Transposon Ty1 protein B|
          Length = 1328

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 141 PIHQYLAFFFLEKQYIMPSNIYTSRIPPLHKGPSS 245
           PI +Y  F+++ K+Y++PSNI    I  +H   S+
Sbjct: 129 PIVKYGDFYWVSKKYLLPSNISVPTINNVHTSEST 163

>ESR1_ONCMY (P16058) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)|
          Length = 622

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +2

Query: 191 AFQYIHK--PYTASSQGPL*SFFRTRADTTPQTQRGRTRSGA----GTSPPPSAASLAGD 352
           AF Y+     YTA +QGP   ++     TTPQ   G    G+    G+SP      ++  
Sbjct: 59  AFNYLDGGYDYTAPAQGPAPLYY----STTPQDAHGPPSDGSMQSLGSSPTGPLVFVSSS 114

Query: 353 PQCGPR 370
           PQ  P+
Sbjct: 115 PQLSPQ 120

>BCAS1_MOUSE (Q80YN3) Breast carcinoma amplified sequence 1 homolog (Novel|
           amplified in breast cancer 1 homolog)
          Length = 633

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 260 RADTTPQTQRGRTRSGAGTSPPPSAASLAGDPQCGPRQRRG 382
           +A+ TPQ  RG+T++    SPPP  +    + +   +++ G
Sbjct: 371 KANFTPQETRGKTKATKSCSPPPPPSEPTSEGRDSGKEKAG 411

>MSP1_PLAYO (P13828) Merozoite surface protein 1 precursor (Merozoite surface|
            antigens) (PMMSA) (230 kDa) (PY230)
          Length = 1772

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 212  PYTASSQGPL*SFFRTRADTTPQTQRGRTRSGAGTSP--PPSAASLAGDPQCGPRQR 376
            P   S+ G   S   T +D TP        S +  +P  PP+A S +G+P  G R R
Sbjct: 1006 PAGTSASGSAASNASTTSDVTPPAAAAAVPSTSTPAPAQPPAANSQSGNPDSGIRSR 1062

>SYNP2_MOUSE (Q91YE8) Synaptopodin-2 (Myopodin)|
          Length = 1087

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +2

Query: 209 KPYTASSQGPL*SFFRTRADTTPQTQRGRTRSGAGTSPPPSAASL-AGDPQCGPRQ 373
           KP+  S   P   F  TR+ T+P +        +  SPPP A S     P  GP Q
Sbjct: 582 KPFLGSMNQPAAPFSPTRSVTSPISDFPAPPPYSAVSPPPEAFSRGVSSPVAGPAQ 637

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
 Frame = +2

Query: 206 HKPYTASSQGPL*SFFRTRADTTPQTQRGR------TRSGA---GTSPPPSAASLAGDPQ 358
           H P  ++S  P     + + +T+P+ Q G+      T+SG      SPPP+    +  P 
Sbjct: 523 HSPSRSASPSPR----KRQKETSPRMQMGKRWQSPVTKSGRRRRSPSPPPTRRRRSPSPA 578

Query: 359 CGPRQRR 379
             PR+RR
Sbjct: 579 PPPRRRR 585

>HXA4_MOUSE (P06798) Homeobox protein Hox-A4 (Hox-1.4) (MH-3)|
          Length = 285

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 381 PLRCRGPHCGSPAKEAADGGGEVPAPDLVLPLCVC 277
           P  CRG   G P +  A G    PAP   +PL  C
Sbjct: 88  PYACRGASPGRPEQSPAPGAHPSPAPQPPVPLGHC 122

>DMWD_HUMAN (Q09019) Dystrophia myotonica WD repeat-containing protein|
           (Dystrophia myotonica-containing WD repeat motif
           protein) (DMR-N9 protein) (Protein 59) (Fragment)
          Length = 553

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 275 PQTQRGRTRSGA-GTSPPPSAASLAGDPQCGPRQR 376
           P   R RT  G  GT+PP +++S  G+P  GP  R
Sbjct: 333 PPLARTRTLPGTPGTTPPAASSSRGGEPGPGPLPR 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,846,390
Number of Sequences: 219361
Number of extensions: 1353478
Number of successful extensions: 4011
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4007
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)