Clone Information

BLAST Search Result

Clone Name	rbart10d04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AL662984.3\|OSJN00183 Oryza sativa genomic DNA, chromosome 4,...	105	1e-19
2	dbj\|AB236018.1\| Oryza environmental sample genomic DNA, clone: 1...	105	1e-19
3	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	105	1e-19
4	dbj\|AK104359.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	105	1e-19
5	dbj\|AK070732.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	105	1e-19
6	dbj\|AK065326.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	105	1e-19
7	emb\|AL442109.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	105	1e-19
8	emb\|AL662976.3\|OSJN00177 Oryza sativa genomic DNA, chromosome 4,...	105	1e-19
9	ref\|XM_473273.1\| Oryza sativa (japonica cultivar-group), predic...	100	9e-18
10	ref\|XM_466971.1\| Oryza sativa (japonica cultivar-group), mRNA	82	2e-12
11	ref\|XM_506883.1\| PREDICTED Oryza sativa (japonica cultivar-group...	82	2e-12
12	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	82	2e-12
13	dbj\|AP004768.3\| Oryza sativa (japonica cultivar-group) genomic D...	82	2e-12
14	dbj\|AK105980.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	82	2e-12
15	dbj\|AK071904.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	82	2e-12
16	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	76	1e-10
17	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	76	1e-10
18	emb\|AL954632.3\|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa...	76	1e-10
19	emb\|Z83827.1\|HS473J6 Human DNA sequence from clone RP3-473J6 on ...	42	1.7
20	gb\|AC102418.9\| Mus musculus chromosome 3, clone RP24-499L10, com...	40	6.9
21	gb\|DQ504427.1\| Homo sapiens DNA cross-link repair 1C (PSO2 homol...	40	6.9
22	gb\|AC122308.3\| Mus musculus BAC clone RP23-288M6 from chromosome...	40	6.9
23	ref\|XM_548232.2\| PREDICTED: Canis familiaris similar to Peripher...	40	6.9
24	ref\|XM_547070.2\| PREDICTED: Canis familiaris similar to apolipop...	40	6.9
25	ref\|XM_663202.1\| Cryptosporidium hominis TU502 vacuolar protein ...	40	6.9
26	gb\|AC163445.3\| Mus musculus chromosome 3, clone RP24-304A4, comp...	40	6.9
27	emb\|AL592046.7\| Human DNA sequence from clone RP11-155O24 on chr...	40	6.9
28	emb\|AL360083.27\| Human DNA sequence from clone RP11-2K17 on chro...	40	6.9
29	emb\|AL158069.16\| Human DNA sequence from clone RP13-57D9 on chro...	40	6.9
30	emb\|AL049651.2\|HSJ753D10 Human DNA sequence from clone RP4-753D1...	40	6.9
31	gb\|AC166325.1\| Mus musculus BAC clone RP24-421O23 from chromosom...	40	6.9
32	gb\|AC153993.23\| Mus musculus 6 BAC RP24-568N16 (Roswell Park Can...	40	6.9
33	emb\|AL645904.13\| Mouse DNA sequence from clone RP23-121P11 on ch...	40	6.9
34	emb\|CR354603.12\| Zebrafish DNA sequence from clone CH211-106J11 ...	40	6.9
35	emb\|AL646002.6\| Mouse DNA sequence from clone RP23-237P10 on chr...	40	6.9
36	gb\|DP000042.1\| Lemur catta target 106 genomic scaffold	40	6.9
37	gb\|DP000006.1\| Oryctolagus cuniculus target 1 genomic scaffold	40	6.9
38	gb\|AC154257.2\| Mus musculus BAC clone RP24-211E15 from chromosom...	40	6.9
39	gb\|AC122152.3\| Oryctolagus cuniculus clone LB1-297M16, complete ...	40	6.9
40	gb\|AC015936.14\| Homo sapiens chromosome 17, clone CTD-2534I21, c...	40	6.9
41	gb\|AC116493.10\| Homo sapiens chromosome 17, clone CTD-3147F3, co...	40	6.9
42	emb\|AL845314.10\| Zebrafish DNA sequence from clone CH211-153N11 ...	40	6.9
43	emb\|BX000362.6\| Zebrafish DNA sequence from clone DKEYP-93D12 in...	40	6.9
44	gb\|AF034084.1\|AF034084 Esox lucius arylalkylamine N-acetyltransf...	40	6.9
45	dbj\|AP001731.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	6.9
46	emb\|CT025696.10\| Mouse DNA sequence from clone RP24-344B20 on ch...	40	6.9
47	gb\|AC153996.3\| Mus musculus 6 BAC RP24-385J11 (Roswell Park Canc...	40	6.9
48	dbj\|AP000161.1\| Homo sapiens genomic DNA, chromosome 21q22.2, DS...	40	6.9
49	dbj\|AP000019.2\| Homo sapiens genomic DNA of 21q22.2 Down Syndrom...	40	6.9
50	dbj\|AP001425.1\| Homo sapiens genomic DNA, chromosome 21q22.2, cl...	40	6.9

>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
             complete sequence
          Length = 140454

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                         
Query: 245   tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 304
             |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 43154 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 43213

                                                  
Query: 305   ggtgcagggacctctccacctccatctgctgcctcct 341
             | ||||| |||||||| || |||||||| || |||||
Sbjct: 43214 gatgcagtgacctctcaacttccatctgatgtctcct 43250



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                         
Query: 392   acatgctcggcggcacctgcccacgaaacgcccacggaagcaccgcctccgccatccctc 451
             |||||||||| |||||||| ||||| || ||||| || ||||||||| | |||||||| |
Sbjct: 43298 acatgctcggtggcacctggccacggaatgcccatggtagcaccgccactgccatccccc 43357

                                                                       
Query: 452   ctagcacccctccagccgtggaatggatcaagccacgccccattggtgaaggagggta 509
             | ||||| || |||||||| || ||||||||||||||||| |||||||| || |||||
Sbjct: 43358 caagcacaccaccagccgtcgagtggatcaagccacgcccaattggtgatggcgggta 43415

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>dbj|AB236018.1| Oryza environmental sample genomic DNA, clone: 1B4-2
          Length = 363

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                       
Query: 245 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 304
           |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 317 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 258

                                                
Query: 305 ggtgcagggacctctccacctccatctgctgcctcct 341
           | ||||| |||||||| || |||||||| || |||||
Sbjct: 257 gatgcagtgacctctcaacttccatctgatgtctcct 221



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 101/118 (85%)
 Strand = Plus / Minus

                                                                       
Query: 392 acatgctcggcggcacctgcccacgaaacgcccacggaagcaccgcctccgccatccctc 451
           |||||||||| |||||||| ||||| || ||||| || ||||||||| | |||||||| |
Sbjct: 173 acatgctcggtggcacctggccacggaatgcccatggtagcaccgccactgccatccccc 114

                                                                     
Query: 452 ctagcacccctccagccgtggaatggatcaagccacgccccattggtgaaggagggta 509
           | ||||| || |||||||| || ||||||||||||||||| |||||||| || |||||
Sbjct: 113 caagcacaccaccagccgtcgagtggatcaagccacgcccaattggtgatggcgggta 56

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                            
Query: 245      tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 304
                |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 26506267 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 26506326

                                                     
Query: 305      ggtgcagggacctctccacctccatctgctgcctcct 341
                | ||||| |||||||| || |||||||| || |||||
Sbjct: 26506327 gatgcagtgacctctcaacttccatctgatgtctcct 26506363



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                            
Query: 392      acatgctcggcggcacctgcccacgaaacgcccacggaagcaccgcctccgccatccctc 451
                |||||||||| |||||||| ||||| || ||||| || ||||||||| | |||||||| |
Sbjct: 26506411 acatgctcggtggcacctggccacggaatgcccatggtagcaccgccactgccatccccc 26506470

                                                                          
Query: 452      ctagcacccctccagccgtggaatggatcaagccacgccccattggtgaaggagggta 509
                | ||||| || |||||||| || ||||||||||||||||| |||||||| || |||||
Sbjct: 26506471 caagcacaccaccagccgtcgagtggatcaagccacgcccaattggtgatggcgggta 26506528

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>dbj|AK104359.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B09, full
           insert sequence
          Length = 1153

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                       
Query: 245 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 304
           |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 976 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 917

                                                
Query: 305 ggtgcagggacctctccacctccatctgctgcctcct 341
           | ||||| |||||||| || |||||||| || |||||
Sbjct: 916 gatgcagtgacctctcaacttccatctgatgtctcct 880



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 101/118 (85%)
 Strand = Plus / Minus

                                                                       
Query: 392 acatgctcggcggcacctgcccacgaaacgcccacggaagcaccgcctccgccatccctc 451
           |||||||||| |||||||| ||||| || ||||| || ||||||||| | |||||||| |
Sbjct: 832 acatgctcggtggcacctggccacggaatgcccatggtagcaccgccactgccatccccc 773

                                                                     
Query: 452 ctagcacccctccagccgtggaatggatcaagccacgccccattggtgaaggagggta 509
           | ||||| || |||||||| || ||||||||||||||||| |||||||| || |||||
Sbjct: 772 caagcacaccaccagccgtcgagtggatcaagccacgcccaattggtgatggcgggta 715

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>dbj|AK070732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063I18, full
            insert sequence
          Length = 1220

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                        
Query: 245  tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 304
            |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 1037 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 978

                                                 
Query: 305  ggtgcagggacctctccacctccatctgctgcctcct 341
            | ||||| |||||||| || |||||||| || |||||
Sbjct: 977  gatgcagtgacctctcaacttccatctgatgtctcct 941



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 101/118 (85%)
 Strand = Plus / Minus

                                                                       
Query: 392 acatgctcggcggcacctgcccacgaaacgcccacggaagcaccgcctccgccatccctc 451
           |||||||||| |||||||| ||||| || ||||| || ||||||||| | |||||||| |
Sbjct: 893 acatgctcggtggcacctggccacggaatgcccatggtagcaccgccactgccatccccc 834

                                                                     
Query: 452 ctagcacccctccagccgtggaatggatcaagccacgccccattggtgaaggagggta 509
           | ||||| || |||||||| || ||||||||||||||||| |||||||| || |||||
Sbjct: 833 caagcacaccaccagccgtcgagtggatcaagccacgcccaattggtgatggcgggta 776

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>dbj|AK065326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F03, full
            insert sequence
          Length = 3579

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                        
Query: 245  tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 304
            |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 2655 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 2596

                                                 
Query: 305  ggtgcagggacctctccacctccatctgctgcctcct 341
            | ||||| |||||||| || |||||||| || |||||
Sbjct: 2595 gatgcagtgacctctcaacttccatctgatgtctcct 2559



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 101/118 (85%)
 Strand = Plus / Minus

                                                                        
Query: 392  acatgctcggcggcacctgcccacgaaacgcccacggaagcaccgcctccgccatccctc 451
            |||||||||| |||||||| ||||| || ||||| || ||||||||| | |||||||| |
Sbjct: 2511 acatgctcggtggcacctggccacggaatgcccatggtagcaccgccactgccatccccc 2452

                                                                      
Query: 452  ctagcacccctccagccgtggaatggatcaagccacgccccattggtgaaggagggta 509
            | ||||| || |||||||| || ||||||||||||||||| |||||||| || |||||
Sbjct: 2451 caagcacaccaccagccgtcgagtggatcaagccacgcccaattggtgatggcgggta 2394

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>emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B1011H02, complete
            sequence
          Length = 40167

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                        
Query: 245  tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 304
            |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 5087 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 5146

                                                 
Query: 305  ggtgcagggacctctccacctccatctgctgcctcct 341
            | ||||| |||||||| || |||||||| || |||||
Sbjct: 5147 gatgcagtgacctctcaacttccatctgatgtctcct 5183



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                        
Query: 392  acatgctcggcggcacctgcccacgaaacgcccacggaagcaccgcctccgccatccctc 451
            |||||||||| |||||||| ||||| || ||||| || ||||||||| | |||||||| |
Sbjct: 5231 acatgctcggtggcacctggccacggaatgcccatggtagcaccgccactgccatccccc 5290

                                                                      
Query: 452  ctagcacccctccagccgtggaatggatcaagccacgccccattggtgaaggagggta 509
            | ||||| || |||||||| || ||||||||||||||||| |||||||| || |||||
Sbjct: 5291 caagcacaccaccagccgtcgagtggatcaagccacgcccaattggtgatggcgggta 5348

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>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
              complete sequence
          Length = 171551

 Score =  105 bits (53), Expect = 1e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                          
Query: 245    tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 304
              |||| ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||
Sbjct: 146907 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 146966

                                                   
Query: 305    ggtgcagggacctctccacctccatctgctgcctcct 341
              | ||||| |||||||| || |||||||| || |||||
Sbjct: 146967 gatgcagtgacctctcaacttccatctgatgtctcct 147003



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                          
Query: 392    acatgctcggcggcacctgcccacgaaacgcccacggaagcaccgcctccgccatccctc 451
              |||||||||| |||||||| ||||| || ||||| || ||||||||| | |||||||| |
Sbjct: 147051 acatgctcggtggcacctggccacggaatgcccatggtagcaccgccactgccatccccc 147110

                                                                        
Query: 452    ctagcacccctccagccgtggaatggatcaagccacgccccattggtgaaggagggta 509
              | ||||| || |||||||| || ||||||||||||||||| |||||||| || |||||
Sbjct: 147111 caagcacaccaccagccgtcgagtggatcaagccacgcccaattggtgatggcgggta 147168

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>ref|XM_473273.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 762

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                       
Query: 252 tcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatctggtgcag 311
           ||||||||||||||| |||| ||||||||| || |||||||||||||||||||| |||||
Sbjct: 762 tcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatctgatgcag 703

                                         
Query: 312 ggacctctccacctccatctgctgcctcct 341
            |||||||| || |||||||| || |||||
Sbjct: 702 tgacctctcaacttccatctgatgtctcct 673



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 101/118 (85%)
 Strand = Plus / Minus

                                                                       
Query: 392 acatgctcggcggcacctgcccacgaaacgcccacggaagcaccgcctccgccatccctc 451
           |||||||||| |||||||| ||||| || ||||| || ||||||||| | |||||||| |
Sbjct: 625 acatgctcggtggcacctggccacggaatgcccatggtagcaccgccactgccatccccc 566

                                                                     
Query: 452 ctagcacccctccagccgtggaatggatcaagccacgccccattggtgaaggagggta 509
           | ||||| || |||||||| || ||||||||||||||||| |||||||| || |||||
Sbjct: 565 caagcacaccaccagccgtcgagtggatcaagccacgcccaattggtgatggcgggta 508

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>ref|XM_466971.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1462

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 289  aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 337
            ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1186 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1138

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>ref|XM_506883.1| PREDICTED Oryza sativa (japonica cultivar-group), P0010C01.23-1 mRNA
          Length = 2039

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 289  aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 337
            ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1701 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1653

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                                 
Query: 289      aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 337
                ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 25690383 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 25690431

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>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0010C01
          Length = 186185

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                              
Query: 289   aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 337
             ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 93059 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 93107

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>dbj|AK105980.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F11, full
            insert sequence
          Length = 2038

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 289  aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 337
            ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1701 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1653

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>dbj|AK071904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063D05, full
            insert sequence
          Length = 1462

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 289  aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 337
            ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 1185 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1137

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                           
Query: 268     cacaacaccacaaacacaaagaggaagaaccagatctggtgcagggacctctccacctcc 327
               |||| ||||||| | || |||||||||||||||||||| ||||| |||||||| || |||
Sbjct: 2682661 cacagcaccacagaaactaagaggaagaaccagatctgatgcagcgacctctcaacttcc 2682720

                             
Query: 328     atctgctgcctcct 341
               |||||||| |||||
Sbjct: 2682721 atctgctgtctcct 2682734

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                           
Query: 268     cacaacaccacaaacacaaagaggaagaaccagatctggtgcagggacctctccacctcc 327
               |||| ||||||| | || |||||||||||||||||||| ||||| |||||||| || |||
Sbjct: 2682605 cacagcaccacagaaactaagaggaagaaccagatctgatgcagcgacctctcaacttcc 2682664

                             
Query: 328     atctgctgcctcct 341
               |||||||| |||||
Sbjct: 2682665 atctgctgtctcct 2682678

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>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151878

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                         
Query: 268   cacaacaccacaaacacaaagaggaagaaccagatctggtgcagggacctctccacctcc 327
             |||| ||||||| | || |||||||||||||||||||| ||||| |||||||| || |||
Sbjct: 51587 cacagcaccacagaaactaagaggaagaaccagatctgatgcagcgacctctcaacttcc 51646

                           
Query: 328   atctgctgcctcct 341
             |||||||| |||||
Sbjct: 51647 atctgctgtctcct 51660

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>emb|Z83827.1|HS473J6 Human DNA sequence from clone RP3-473J6 on chromosome Xq21.1, complete
             sequence
          Length = 135686

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 7     gaatgagaattgcatttcacctcca 31
             |||||||||||| ||||||||||||
Sbjct: 29818 gaatgagaattggatttcacctcca 29794

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>gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, complete sequence
          Length = 208274

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    cacaaacacaaagaggaaga 295
              ||||||||||||||||||||
Sbjct: 182985 cacaaacacaaagaggaaga 183004

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>gb|DQ504427.1| Homo sapiens DNA cross-link repair 1C (PSO2 homolog, S. cerevisiae)
            (DCLRE1C) gene, complete cds
          Length = 50007

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 181  agtatatcatgccttccaatatat 204
            |||||||||||| |||||||||||
Sbjct: 6424 agtatatcatgcattccaatatat 6401

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>gb|AC122308.3| Mus musculus BAC clone RP23-288M6 from chromosome 9, complete sequence
          Length = 142409

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   cacccattcatcagtatctt 158
             ||||||||||||||||||||
Sbjct: 15638 cacccattcatcagtatctt 15619

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>ref|XM_548232.2| PREDICTED: Canis familiaris similar to Peripheral-type benzodiazepine
            receptor-associated protein 1 (PRAX-1) (Peripheral
            benzodiazepine receptor interacting protein) (PBR-IP)
            (RIM binding protein 1) (RIM-BP1) (LOC491112), mRNA
          Length = 5424

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 318  ctccacctccatctgctgcctcct 341
            ||||||||||| ||||||||||||
Sbjct: 1116 ctccacctccagctgctgcctcct 1093

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>ref|XM_547070.2| PREDICTED: Canis familiaris similar to apolipoprotein B48 receptor
            (LOC489950), mRNA
          Length = 3654

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  tctggtgcagggacctctcc 321
            ||||||||||||||||||||
Sbjct: 1814 tctggtgcagggacctctcc 1795

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>ref|XM_663202.1| Cryptosporidium hominis TU502 vacuolar protein sorting-associated
           protein (Chro.30060) partial mRNA
          Length = 13242

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 324 ctccatctgctgcctccttagccg 347
           ||||||||||||||||||| ||||
Sbjct: 919 ctccatctgctgcctcctttgccg 896

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>gb|AC163445.3| Mus musculus chromosome 3, clone RP24-304A4, complete sequence
          Length = 175181

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   cacaaacacaaagaggaaga 295
             ||||||||||||||||||||
Sbjct: 25284 cacaaacacaaagaggaaga 25303

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>emb|AL592046.7| Human DNA sequence from clone RP11-155O24 on chromosome X Contains part
             of the gene for upstream regulatory element binding
             protein 1 (UREB1) and a CpG island, complete sequence
          Length = 86196

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   agaggaagaaccagatctgg 306
             ||||||||||||||||||||
Sbjct: 27748 agaggaagaaccagatctgg 27767

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>emb|AL360083.27| Human DNA sequence from clone RP11-2K17 on chromosome 10 Contains the
             3' end of the gene for suppressor of variegation 3-9
             (Drosophila) homolog 2; hypothetical protein FLJ23414
             (SUV39H2)(FLJ23414), the DCLRE1C gene for DNA cross-link
             repair 1C (PSO2 homolog, S.cerevisiae) (SCIDA, SNM1C,
             ARTEMIS, RS-SCID,DCLREC1C, FLJ11360), the gene for a novel
             protein similar to mouse Meig1 (Meg1)(meiosis expressed
             gene 1), a novel gene, a seven transmembrane receptor
             (Rhodopsin family) pseudogene and two CpG islands,
             complete sequence
          Length = 94963

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 181   agtatatcatgccttccaatatat 204
             |||||||||||| |||||||||||
Sbjct: 50043 agtatatcatgcattccaatatat 50066

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>emb|AL158069.16| Human DNA sequence from clone RP13-57D9 on chromosome Xq11.2-13.2
             Contains the gene for TED protein (TED),  the 5' end of
             the ED1 gene for ectodermal dysplasia 1, anhidrotic, two
             novel genes and three CpG islands, complete sequence
          Length = 186538

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   accattccttaccctctctt 121
             ||||||||||||||||||||
Sbjct: 28324 accattccttaccctctctt 28343

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>emb|AL049651.2|HSJ753D10 Human DNA sequence from clone RP4-753D10 on chromosome 20 Contains the
             SSTR4 gene for somatostatin receptor 4, the THBD gene for
             thrombomodulin, two novel genes and two CpG islands,
             complete sequence
          Length = 97912

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 38    catattacaagcatgatttacccg 61
             ||||||| ||||||||||||||||
Sbjct: 61238 catattaaaagcatgatttacccg 61215

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>gb|AC166325.1| Mus musculus BAC clone RP24-421O23 from chromosome 13, complete sequence
          Length = 192167

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     ccgttaacacttaacagcat 99
              ||||||||||||||||||||
Sbjct: 163618 ccgttaacacttaacagcat 163599

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>gb|AC153993.23| Mus musculus 6 BAC RP24-568N16 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 188187

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ttctttttcctcgagaagca 181
             ||||||||||||||||||||
Sbjct: 10588 ttctttttcctcgagaagca 10607

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>emb|AL645904.13| Mouse DNA sequence from clone RP23-121P11 on chromosome 11 Contains
           the gene for a novel protein (1700121K02Rik), the Hnrph1
           gene for heterogeneous nuclear ribonucleoprotein H1, the
           Rufy1 gene for RUN and FYVE domain containing 1, a novel
           pseudogene and three CpG islands, complete sequence
          Length = 193696

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 108 ccttaccctctcttcatcac 127
           ||||||||||||||||||||
Sbjct: 428 ccttaccctctcttcatcac 447

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>emb|CR354603.12| Zebrafish DNA sequence from clone CH211-106J11 in linkage group 24,
             complete sequence
          Length = 159582

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 262   agcagacacaacaccacaaacaca 285
             ||||||||||||||||||| ||||
Sbjct: 25137 agcagacacaacaccacaagcaca 25160

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>emb|AL646002.6| Mouse DNA sequence from clone RP23-237P10 on chromosome 11 Contains gene
              D930008C07Rik, the Canx gene for calnexin, a high mobility
              group nucleosomal binding domain 2 (Hmgn2) pseudogene and
              two CpG islands, complete sequence
          Length = 113907

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    ccttaccctctcttcatcac 127
              ||||||||||||||||||||
Sbjct: 112335 ccttaccctctcttcatcac 112354

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>gb|DP000042.1| Lemur catta target 106 genomic scaffold
          Length = 452647

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 489    ccccattggtgaaggagggt 508
              ||||||||||||||||||||
Sbjct: 415171 ccccattggtgaaggagggt 415190

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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 287     agaggaagaaccagatctgg 306
               ||||||||||||||||||||
Sbjct: 1681800 agaggaagaaccagatctgg 1681819

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>gb|AC154257.2| Mus musculus BAC clone RP24-211E15 from chromosome 13, complete
             sequence
          Length = 152267

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    ccgttaacacttaacagcat 99
             ||||||||||||||||||||
Sbjct: 42033 ccgttaacacttaacagcat 42014

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>gb|AC122152.3| Oryctolagus cuniculus clone LB1-297M16, complete sequence
          Length = 189392

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    agaggaagaaccagatctgg 306
              ||||||||||||||||||||
Sbjct: 133597 agaggaagaaccagatctgg 133616

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>gb|AC015936.14| Homo sapiens chromosome 17, clone CTD-2534I21, complete sequence
          Length = 203401

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    agcaccgcctccgccatccc 449
              ||||||||||||||||||||
Sbjct: 193803 agcaccgcctccgccatccc 193784

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>gb|AC116493.10| Homo sapiens chromosome 17, clone CTD-3147F3, complete sequence
          Length = 94420

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   agcaccgcctccgccatccc 449
             ||||||||||||||||||||
Sbjct: 81762 agcaccgcctccgccatccc 81781

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>emb|AL845314.10| Zebrafish DNA sequence from clone CH211-153N11 in linkage group 20,
              complete sequence
          Length = 179498

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     catattacaagcatgattta 57
              ||||||||||||||||||||
Sbjct: 132776 catattacaagcatgattta 132795

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>emb|BX000362.6| Zebrafish DNA sequence from clone DKEYP-93D12 in linkage group 20,
             complete sequence
          Length = 205186

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    catattacaagcatgattta 57
             ||||||||||||||||||||
Sbjct: 65624 catattacaagcatgattta 65643

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>gb|AF034084.1|AF034084 Esox lucius arylalkylamine N-acetyltransferase (AANAT1) gene,
           partial cds
          Length = 519

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 101 aaccattccttaccctctct 120
           ||||||||||||||||||||
Sbjct: 39  aaccattccttaccctctct 20

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>dbj|AP001731.1| Homo sapiens genomic DNA, chromosome 21q, section 75/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   cctccatctgctgcctcctt 342
             ||||||||||||||||||||
Sbjct: 44491 cctccatctgctgcctcctt 44472

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>emb|CT025696.10| Mouse DNA sequence from clone RP24-344B20 on chromosome 9, complete
              sequence
          Length = 163726

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    cacccattcatcagtatctt 158
              ||||||||||||||||||||
Sbjct: 114131 cacccattcatcagtatctt 114150

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>gb|AC153996.3| Mus musculus 6 BAC RP24-385J11 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 155517

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   ttctttttcctcgagaagca 181
             ||||||||||||||||||||
Sbjct: 33158 ttctttttcctcgagaagca 33139

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>dbj|AP000161.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 13/16, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   cctccatctgctgcctcctt 342
             ||||||||||||||||||||
Sbjct: 30908 cctccatctgctgcctcctt 30889

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>dbj|AP000019.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 10/13
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   cctccatctgctgcctcctt 342
             ||||||||||||||||||||
Sbjct: 65304 cctccatctgctgcctcctt 65285

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>dbj|AP001425.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:S440, LB7T-ERG
             region, complete sequence
          Length = 60193

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   cctccatctgctgcctcctt 342
             ||||||||||||||||||||
Sbjct: 25323 cctccatctgctgcctcctt 25304


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,239,606
Number of Sequences: 3902068
Number of extensions: 5239606
Number of successful extensions: 122881
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122637
Number of HSP's gapped (non-prelim): 244
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result