Clone Name | rbart10d02 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197026.1| Oryza sativa (japonica cultivar-group) putative glucose-6-phosphate/phosphate-translocator (OSJNBa0055P24.11), mRNA Length = 1335 Score = 119 bits (60), Expect = 8e-24 Identities = 90/100 (90%) Strand = Plus / Minus Query: 343 ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402 ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| Sbjct: 847 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 788 Query: 403 gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442 || |||||| | |||||||| || |||||||||||||| Sbjct: 787 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 748 Score = 48.1 bits (24), Expect = 0.024 Identities = 39/44 (88%) Strand = Plus / Minus Query: 180 gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223 ||||||| || ||||||||||| ||||| ||||| ||||||||| Sbjct: 1046 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 1003
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete sequence Length = 178692 Score = 119 bits (60), Expect = 8e-24 Identities = 90/100 (90%) Strand = Plus / Plus Query: 343 ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402 ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| Sbjct: 171779 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 171838 Query: 403 gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442 || |||||| | |||||||| || |||||||||||||| Sbjct: 171839 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 171878 Score = 48.1 bits (24), Expect = 0.024 Identities = 39/44 (88%) Strand = Plus / Plus Query: 180 gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223 ||||||| || ||||||||||| ||||| ||||| ||||||||| Sbjct: 170986 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 171029
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 119 bits (60), Expect = 8e-24 Identities = 90/100 (90%) Strand = Plus / Minus Query: 343 ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402 ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| Sbjct: 17502852 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 17502793 Query: 403 gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442 || |||||| | |||||||| || |||||||||||||| Sbjct: 17502792 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 17502753 Score = 48.1 bits (24), Expect = 0.024 Identities = 39/44 (88%) Strand = Plus / Minus Query: 180 gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223 ||||||| || ||||||||||| ||||| ||||| ||||||||| Sbjct: 17503645 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 17503602
>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete sequence Length = 134058 Score = 119 bits (60), Expect = 8e-24 Identities = 90/100 (90%) Strand = Plus / Minus Query: 343 ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402 ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| Sbjct: 131847 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 131788 Query: 403 gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442 || |||||| | |||||||| || |||||||||||||| Sbjct: 131787 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 131748 Score = 48.1 bits (24), Expect = 0.024 Identities = 39/44 (88%) Strand = Plus / Minus Query: 180 gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223 ||||||| || ||||||||||| ||||| ||||| ||||||||| Sbjct: 132640 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 132597
>dbj|AK103346.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126D12, full insert sequence Length = 1629 Score = 119 bits (60), Expect = 8e-24 Identities = 90/100 (90%) Strand = Plus / Minus Query: 343 ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402 ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| Sbjct: 1141 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 1082 Query: 403 gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442 || |||||| | |||||||| || |||||||||||||| Sbjct: 1081 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 1042 Score = 48.1 bits (24), Expect = 0.024 Identities = 39/44 (88%) Strand = Plus / Minus Query: 180 gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223 ||||||| || ||||||||||| ||||| ||||| ||||||||| Sbjct: 1340 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 1297
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 119 bits (60), Expect = 8e-24 Identities = 90/100 (90%) Strand = Plus / Minus Query: 343 ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402 ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| Sbjct: 17511892 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 17511833 Query: 403 gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442 || |||||| | |||||||| || |||||||||||||| Sbjct: 17511832 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 17511793 Score = 48.1 bits (24), Expect = 0.024 Identities = 39/44 (88%) Strand = Plus / Minus Query: 180 gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223 ||||||| || ||||||||||| ||||| ||||| ||||||||| Sbjct: 17512685 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 17512642
>gb|BT017671.1| Zea mays clone EL01N0442B02.c mRNA sequence Length = 975 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Minus Query: 324 cctcggtcttcttcctgctctcggagacggagaagaaggagtagaggcccatgccgaaga 383 ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| Sbjct: 443 cctcggtcttcttcctgctctcgacgacggagtagtaggagtagaggcccatgccgaaga 384 Query: 384 tggcaatgaggatgcc 399 |||| ||||||||||| Sbjct: 383 tggcgatgaggatgcc 368
>gb|AY109310.1| Zea mays PCO095035 mRNA sequence Length = 780 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Minus Query: 324 cctcggtcttcttcctgctctcggagacggagaagaaggagtagaggcccatgccgaaga 383 ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| Sbjct: 545 cctcggtcttcttcctgctctcgacgacggagtagtaggagtagaggcccatgccgaaga 486 Query: 384 tggcaatgaggatgcc 399 |||| ||||||||||| Sbjct: 485 tggcgatgaggatgcc 470
>dbj|AK109405.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H02, full insert sequence Length = 1142 Score = 105 bits (53), Expect = 1e-19 Identities = 90/101 (89%), Gaps = 1/101 (0%) Strand = Plus / Minus Query: 343 ctcggagacggagaagaaggagtagaggccc-atgccgaagatggcaatgaggatgccgg 401 ||||||||||||||||||||||||||||||| || ||||||||||| | ||||||||||| Sbjct: 626 ctcggagacggagaagaaggagtagaggccccatcccgaagatggcgacgaggatgccgg 567 Query: 402 cgaggttgcgtagtgtgaagggatctttgaggaggacgtag 442 ||| |||||| | |||||||| || |||||||||||||| Sbjct: 566 cgacgttgcggaaggtgaaggggtccctgaggaggacgtag 526 Score = 48.1 bits (24), Expect = 0.024 Identities = 39/44 (88%) Strand = Plus / Minus Query: 180 gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223 ||||||| || ||||||||||| ||||| ||||| ||||||||| Sbjct: 825 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 782
>ref|XM_792142.1| PREDICTED: Strongylocentrotus purpuratus similar to Bifunctional 3-phosphoadenosine 5-phosphosulfate synthethase 1 (PAPS synthethase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1) (SK 1) (LOC592629), mRNA Length = 1196 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 gaatccttctcgctcatctgg 301 ||||||||||||||||||||| Sbjct: 592 gaatccttctcgctcatctgg 572
>ref|XM_418188.1| PREDICTED: Gallus gallus similar to Megakaryocyte-associated tyrosine-protein kinase (Tyrosine-protein kinase CTK) (Protein kinase HYL) (Hematopoietic consensus tyrosine-lacking kinase) (LOC420069), mRNA Length = 4466 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ccaggccggggctttggctc 24 |||||||||||||||||||| Sbjct: 102 ccaggccggggctttggctc 121
>gb|AC146594.3| Mus musculus BAC clone RP24-155O13 from chromosome 14, complete sequence Length = 172361 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gaaaaaagaaccaccttaca 50 |||||||||||||||||||| Sbjct: 99400 gaaaaaagaaccaccttaca 99381
>gb|U39472.1| Caenorhabditis elegans cosmid B0304, complete sequence Length = 42282 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 tcttcttcctgctctcggag 349 |||||||||||||||||||| Sbjct: 15586 tcttcttcctgctctcggag 15567
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 214 gtcgtcgaagttctccgccccgctgctc 241 |||||| |||||| |||||||||||||| Sbjct: 1349791 gtcgtccaagttcaccgccccgctgctc 1349818
>gb|AF404306.1| Rhizophydium sp. 136 mitochondrion, complete genome Length = 68834 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 tagatattgatgctgatataccaa 141 ||||||| |||||||||||||||| Sbjct: 6795 tagatatggatgctgatataccaa 6818
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ctttcgtgccaaggagcggt 277 |||||||||||||||||||| Sbjct: 255887 ctttcgtgccaaggagcggt 255868
>gb|AC160560.2| Mus musculus BAC clone RP23-357O18 from chromosome 9, complete sequence Length = 213978 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 gagacggagaagaaggagtagagg 370 |||| ||||||||||||||||||| Sbjct: 112955 gagagggagaagaaggagtagagg 112978
>gb|M59940.1|CELMYOD Caenorhabditis elegans N2 CeMyoD (hlh-1) alternatively spliced genes, complete cds Length = 6751 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 tcttcttcctgctctcggag 349 |||||||||||||||||||| Sbjct: 1521 tcttcttcctgctctcggag 1502 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,158,767 Number of Sequences: 3902068 Number of extensions: 3158767 Number of successful extensions: 60324 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60203 Number of HSP's gapped (non-prelim): 120 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)