ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197026.1| Oryza sativa (japonica cultivar-group) putative... 119 8e-24
2gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 geno... 119 8e-24
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
4gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055... 119 8e-24
5dbj|AK103346.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 8e-24
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 119 8e-24
7gb|BT017671.1| Zea mays clone EL01N0442B02.c mRNA sequence 111 2e-21
8gb|AY109310.1| Zea mays PCO095035 mRNA sequence 111 2e-21
9dbj|AK109405.2| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
10ref|XM_792142.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.5
11ref|XM_418188.1| PREDICTED: Gallus gallus similar to Megakaryocy... 40 5.9
12gb|AC146594.3| Mus musculus BAC clone RP24-155O13 from chromosom... 40 5.9
13gb|U39472.1| Caenorhabditis elegans cosmid B0304, complete sequence 40 5.9
14gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.9
15gb|AF404306.1| Rhizophydium sp. 136 mitochondrion, complete genome 40 5.9
16gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 5.9
17gb|AC160560.2| Mus musculus BAC clone RP23-357O18 from chromosom... 40 5.9
18gb|M59940.1|CELMYOD Caenorhabditis elegans N2 CeMyoD (hlh-1) alt... 40 5.9

>ref|NM_197026.1| Oryza sativa (japonica cultivar-group) putative
           glucose-6-phosphate/phosphate-translocator
           (OSJNBa0055P24.11), mRNA
          Length = 1335

 Score =  119 bits (60), Expect = 8e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                       
Query: 343 ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402
           ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 847 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 788

                                                   
Query: 403 gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442
           || |||||| |  |||||||| ||  ||||||||||||||
Sbjct: 787 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 748



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 180  gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223
            ||||||| || ||||||||||| ||||| ||||| |||||||||
Sbjct: 1046 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 1003



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>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete
              sequence
          Length = 178692

 Score =  119 bits (60), Expect = 8e-24
 Identities = 90/100 (90%)
 Strand = Plus / Plus

                                                                          
Query: 343    ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402
              ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 171779 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 171838

                                                      
Query: 403    gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442
              || |||||| |  |||||||| ||  ||||||||||||||
Sbjct: 171839 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 171878



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 180    gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223
              ||||||| || ||||||||||| ||||| ||||| |||||||||
Sbjct: 170986 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 171029



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  119 bits (60), Expect = 8e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                            
Query: 343      ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402
                ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 17502852 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 17502793

                                                        
Query: 403      gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442
                || |||||| |  |||||||| ||  ||||||||||||||
Sbjct: 17502792 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 17502753



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 180      gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223
                ||||||| || ||||||||||| ||||| ||||| |||||||||
Sbjct: 17503645 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 17503602



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>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete
              sequence
          Length = 134058

 Score =  119 bits (60), Expect = 8e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                          
Query: 343    ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402
              ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 131847 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 131788

                                                      
Query: 403    gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442
              || |||||| |  |||||||| ||  ||||||||||||||
Sbjct: 131787 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 131748



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 180    gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223
              ||||||| || ||||||||||| ||||| ||||| |||||||||
Sbjct: 132640 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 132597



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>dbj|AK103346.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126D12, full
            insert sequence
          Length = 1629

 Score =  119 bits (60), Expect = 8e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                        
Query: 343  ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402
            ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 1141 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 1082

                                                    
Query: 403  gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442
            || |||||| |  |||||||| ||  ||||||||||||||
Sbjct: 1081 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 1042



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 180  gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223
            ||||||| || ||||||||||| ||||| ||||| |||||||||
Sbjct: 1340 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 1297



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  119 bits (60), Expect = 8e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                            
Query: 343      ctcggagacggagaagaaggagtagaggcccatgccgaagatggcaatgaggatgccggc 402
                ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 17511892 ctcggagacggagaagaaggagtagaggcccatcccgaagatggcgacgaggatgccggc 17511833

                                                        
Query: 403      gaggttgcgtagtgtgaagggatctttgaggaggacgtag 442
                || |||||| |  |||||||| ||  ||||||||||||||
Sbjct: 17511832 gacgttgcggaaggtgaaggggtccctgaggaggacgtag 17511793



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 180      gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223
                ||||||| || ||||||||||| ||||| ||||| |||||||||
Sbjct: 17512685 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 17512642



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>gb|BT017671.1| Zea mays clone EL01N0442B02.c mRNA sequence
          Length = 975

 Score =  111 bits (56), Expect = 2e-21
 Identities = 71/76 (93%)
 Strand = Plus / Minus

                                                                       
Query: 324 cctcggtcttcttcctgctctcggagacggagaagaaggagtagaggcccatgccgaaga 383
           |||||||||||||||||||||||  ||||||| || ||||||||||||||||||||||||
Sbjct: 443 cctcggtcttcttcctgctctcgacgacggagtagtaggagtagaggcccatgccgaaga 384

                           
Query: 384 tggcaatgaggatgcc 399
           |||| |||||||||||
Sbjct: 383 tggcgatgaggatgcc 368



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>gb|AY109310.1| Zea mays PCO095035 mRNA sequence
          Length = 780

 Score =  111 bits (56), Expect = 2e-21
 Identities = 71/76 (93%)
 Strand = Plus / Minus

                                                                       
Query: 324 cctcggtcttcttcctgctctcggagacggagaagaaggagtagaggcccatgccgaaga 383
           |||||||||||||||||||||||  ||||||| || ||||||||||||||||||||||||
Sbjct: 545 cctcggtcttcttcctgctctcgacgacggagtagtaggagtagaggcccatgccgaaga 486

                           
Query: 384 tggcaatgaggatgcc 399
           |||| |||||||||||
Sbjct: 485 tggcgatgaggatgcc 470



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>dbj|AK109405.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H02, full
           insert sequence
          Length = 1142

 Score =  105 bits (53), Expect = 1e-19
 Identities = 90/101 (89%), Gaps = 1/101 (0%)
 Strand = Plus / Minus

                                                                       
Query: 343 ctcggagacggagaagaaggagtagaggccc-atgccgaagatggcaatgaggatgccgg 401
           ||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||||
Sbjct: 626 ctcggagacggagaagaaggagtagaggccccatcccgaagatggcgacgaggatgccgg 567

                                                    
Query: 402 cgaggttgcgtagtgtgaagggatctttgaggaggacgtag 442
           ||| |||||| |  |||||||| ||  ||||||||||||||
Sbjct: 566 cgacgttgcggaaggtgaaggggtccctgaggaggacgtag 526



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 180 gccggctaaatgcgctcttcgcggtccttggcacgtcgtcgaag 223
           ||||||| || ||||||||||| ||||| ||||| |||||||||
Sbjct: 825 gccggctgaacgcgctcttcgccgtcctcggcacctcgtcgaag 782



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>ref|XM_792142.1| PREDICTED: Strongylocentrotus purpuratus similar to Bifunctional
           3-phosphoadenosine 5-phosphosulfate synthethase 1 (PAPS
           synthethase 1) (PAPSS 1) (Sulfurylase kinase 1) (SK1)
           (SK 1) (LOC592629), mRNA
          Length = 1196

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 281 gaatccttctcgctcatctgg 301
           |||||||||||||||||||||
Sbjct: 592 gaatccttctcgctcatctgg 572



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>ref|XM_418188.1| PREDICTED: Gallus gallus similar to Megakaryocyte-associated
           tyrosine-protein kinase (Tyrosine-protein kinase CTK)
           (Protein kinase HYL) (Hematopoietic consensus
           tyrosine-lacking kinase) (LOC420069), mRNA
          Length = 4466

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   ccaggccggggctttggctc 24
           ||||||||||||||||||||
Sbjct: 102 ccaggccggggctttggctc 121



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>gb|AC146594.3| Mus musculus BAC clone RP24-155O13 from chromosome 14, complete
             sequence
          Length = 172361

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    gaaaaaagaaccaccttaca 50
             ||||||||||||||||||||
Sbjct: 99400 gaaaaaagaaccaccttaca 99381



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>gb|U39472.1| Caenorhabditis elegans cosmid B0304, complete sequence
          Length = 42282

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   tcttcttcctgctctcggag 349
             ||||||||||||||||||||
Sbjct: 15586 tcttcttcctgctctcggag 15567



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 214     gtcgtcgaagttctccgccccgctgctc 241
               |||||| |||||| ||||||||||||||
Sbjct: 1349791 gtcgtccaagttcaccgccccgctgctc 1349818



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>gb|AF404306.1| Rhizophydium sp. 136 mitochondrion, complete genome
          Length = 68834

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 118  tagatattgatgctgatataccaa 141
            ||||||| ||||||||||||||||
Sbjct: 6795 tagatatggatgctgatataccaa 6818



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    ctttcgtgccaaggagcggt 277
              ||||||||||||||||||||
Sbjct: 255887 ctttcgtgccaaggagcggt 255868



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>gb|AC160560.2| Mus musculus BAC clone RP23-357O18 from chromosome 9, complete sequence
          Length = 213978

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 347    gagacggagaagaaggagtagagg 370
              |||| |||||||||||||||||||
Sbjct: 112955 gagagggagaagaaggagtagagg 112978



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>gb|M59940.1|CELMYOD Caenorhabditis elegans N2 CeMyoD (hlh-1) alternatively spliced genes,
            complete cds
          Length = 6751

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 330  tcttcttcctgctctcggag 349
            ||||||||||||||||||||
Sbjct: 1521 tcttcttcctgctctcggag 1502


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,158,767
Number of Sequences: 3902068
Number of extensions: 3158767
Number of successful extensions: 60324
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60203
Number of HSP's gapped (non-prelim): 120
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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