ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DTD_LACAC (Q5FKI6) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) 32 0.80
2RW1_MOUSE (O70472) RW1 protein 30 4.0

>DTD_LACAC (Q5FKI6) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 145

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 248 DIHREVLVLYEASRLMQHTEGNRPTQISFI-VPLSQELQKQSNQPRERDGF 397
           D++ E+L + + + +    +GNRP+ +  +  P+S+EL +  N+  E DGF
Sbjct: 68  DVNGEILSVSQFTLMANTKKGNRPSFVEAMRPPMSKELWEDFNKELENDGF 118



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>RW1_MOUSE (O70472) RW1 protein|
          Length = 1829

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = +2

Query: 311  NRPTQISFIVPLSQELQKQSNQPRERDGFSLNNPTHIWRTIVYCHLLSSPSDDIRKIHL 487
            NRP  +S  +P SQEL   S+   E+D     +P   W   V  H  SS +D + K+ L
Sbjct: 1481 NRPVALSKFLPSSQELGNTSSSEGEKD-----SPPPEW-DAVPVHKPSSSTDSLYKLSL 1533


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,692,634
Number of Sequences: 219361
Number of extensions: 1569542
Number of successful extensions: 3527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3526
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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