ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC ... 43 5e-04
2YAE9_YEAST (P39721) Protein YAL049C 37 0.036
3DLHH_YERPE (Q8ZAL4) Putative carboxymethylenebutenolidase (EC 3.... 32 1.2
4EFTS_DESVH (Q72DQ6) Elongation factor Ts (EF-Ts) 31 1.5
5ABDA_DROME (P29555) Homeobox protein abdominal-A 29 7.6

>E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-)|
          Length = 303

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 20/36 (55%), Positives = 27/36 (75%)
 Frame = -2

Query: 485 VTVEDIKEVKCPIAVLGAEIDKTSPPELVKQFEQVL 378
           VT +D+KEVK PI +LGA+ D T+PP+ V +F  VL
Sbjct: 178 VTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVL 213



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>YAE9_YEAST (P39721) Protein YAL049C|
          Length = 246

 Score = 36.6 bits (83), Expect = 0.036
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -2

Query: 485 VTVEDIKEV--KCPIAVLGAEIDKTSPPELVKQFEQVLSSNSGIAHFVKIFPGVSHGWTV 312
           V++E+I+ +  K PI +  AE D   P  L    E+ L  N    + + +F GV+HG+  
Sbjct: 158 VSIEEIEAIDSKKPILISAAEEDHIFPANLRHLTEEKLKDNHA-TYQLDLFSGVAHGFAA 216

Query: 311 RYKSEDAGAVKSAEEALSHMIDWFS 237
           R          + E+ L   I WF+
Sbjct: 217 RGDISIPAVKYAKEKVLLDQIYWFN 241



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>DLHH_YERPE (Q8ZAL4) Putative carboxymethylenebutenolidase (EC 3.1.1.45)|
           (Dienelactone hydrolase) (DLH)
          Length = 267

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 17/74 (22%), Positives = 36/74 (48%)
 Frame = -2

Query: 452 PIAVLGAEIDKTSPPELVKQFEQVLSSNSGIAHFVKIFPGVSHGWTVRYKSEDAGAVKSA 273
           P+  L    D + P E ++   Q L + +  A  + ++P   H +   Y+   +   +SA
Sbjct: 185 PVLGLYGGKDTSIPAEHIETMRQALRAANADAEII-VYPEAGHAFNADYRP--SYHAESA 241

Query: 272 EEALSHMIDWFSKN 231
           ++    M+DWF+++
Sbjct: 242 QDGWQRMLDWFTQH 255



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>EFTS_DESVH (Q72DQ6) Elongation factor Ts (EF-Ts)|
          Length = 287

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -2

Query: 425 DKTSPPELVKQFEQVLSSNSGIAHFVKIFPGVSHGWTVRYKSEDAGAVKSAE 270
           DKT+  EL+KQ  + +  N G+A FV+   G           EDA A ++AE
Sbjct: 247 DKTTVAELLKQTSKAVGDNLGVARFVRFQLG-----------EDAAAEEAAE 287



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>ABDA_DROME (P29555) Homeobox protein abdominal-A|
          Length = 590

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 265 ASSALFTAPASSLL-YLTVHP*ETPGNILTK*AIPELEDRTCSNCLTNSGGDVLSISAPS 441
           A+S+ F  P S +  Y++ HP  + G +        LED++CS           S+S P+
Sbjct: 249 AASSSFAIPTSKMYPYVSNHP-SSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPA 307

Query: 442 TAMGHF 459
           +A   F
Sbjct: 308 SASAQF 313


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,698,092
Number of Sequences: 219361
Number of extensions: 1371008
Number of successful extensions: 3083
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3083
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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