>gb|BT018908.1| Zea mays clone EL01T0402E10.d mRNA sequence
          Length = 1455

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                        
Query: 351  gcctgtgctagtccataggatggtggtatctgtgtgtgtgcataagaagatggagcctgt 410
            ||||||||||| |  ||||||| ||||| |||||||||  |||| | |||||| ||||| 
Sbjct: 1080 gcctgtgctagactgtaggatgatggtagctgtgtgtgcccatacgcagatggtgcctgc 1021

                                                 
Query: 411  gtttgtccatatgatgatagtccctgagctgagccat 447
            |||||||||||||||| | |  |||||||||| ||||
Sbjct: 1020 gtttgtccatatgatggttgcgcctgagctgaaccat 984

>gb|AY109527.1| Zea mays CL8266_1 mRNA sequence
          Length = 673

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 81/97 (83%)
 Strand = Plus / Plus

                                                                       
Query: 351 gcctgtgctagtccataggatggtggtatctgtgtgtgtgcataagaagatggagcctgt 410
           ||||||||||| |  ||||||| ||||| |||||||||  |||| | |||||| ||||| 
Sbjct: 421 gcctgtgctagactgtaggatgatggtagctgtgtgtgcccatacgcagatggtgcctgc 480

                                                
Query: 411 gtttgtccatatgatgatagtccctgagctgagccat 447
           |||||||||||||||| | |  |||||||||| ||||
Sbjct: 481 gtttgtccatatgatggttgcgcctgagctgaaccat 517

>gb|DP000058.1| Felis catus target 117 genomic scaffold
          Length = 458092

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 136    agaaactaaattttactctggt 157
              ||||||||||||||||||||||
Sbjct: 415812 agaaactaaattttactctggt 415791

>gb|AY845133.1| Homo sapiens Lutheran blood group (Auberger b antigen included) (LU)
            gene, complete cds
          Length = 16907

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   ctccatctcagaaacaaata 51
            ||||||||||||||||||||
Sbjct: 9762 ctccatctcagaaacaaata 9781

>gb|AE000662.1|HUAE000662 Homo sapiens T-cell receptor alpha delta locus from bases 1000498 to
             1071650 (section 5 of 5) of the Complete Nucleotide
             Sequence
          Length = 71153

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   tgtgtgtgtgcataagaaga 400
             ||||||||||||||||||||
Sbjct: 12913 tgtgtgtgtgcataagaaga 12894

>gb|AF411058.1| Homo sapiens clone BAC_22700 cytotoxic T-lymphocyte-associated protein 4
              (CTLA4) and inducible T-cell co-stimulator (ICOS) genes,
              complete cds; and endogenous virus HERV-H, partial sequence
          Length = 181654

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 375    ggtatctgtgtgtgtgcataagaa 398
              ||||| ||||||||||||||||||
Sbjct: 105732 ggtatgtgtgtgtgtgcataagaa 105755

>gb|AC117721.8| Mus musculus chromosome 1, clone RP24-196D2, complete sequence
          Length = 170426

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   gtatctgtgtgtgtgcataa 395
             ||||||||||||||||||||
Sbjct: 92576 gtatctgtgtgtgtgcataa 92595

>gb|AC145760.3| Microcebus murinus clone CH257-514K9, complete sequence
          Length = 271789

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    tggtggtatctgtgtgtgtg 390
              ||||||||||||||||||||
Sbjct: 112564 tggtggtatctgtgtgtgtg 112545

>gb|AC110566.17| Mus musculus chromosome 5, clone RP23-300A10, complete sequence
          Length = 175471

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    gtatctgtgtgtgtgcataa 395
              ||||||||||||||||||||
Sbjct: 126640 gtatctgtgtgtgtgcataa 126659

>gb|AC125540.4| Mus musculus BAC clone RP23-229O18 from chromosome 15, complete
             sequence
          Length = 162455

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 418   catatgatgatagtccctgagctg 441
             |||||||||||||| |||||||||
Sbjct: 56279 catatgatgatagtgcctgagctg 56256

>gb|AC116585.3| Mus musculus BAC clone RP23-358A16 from chromosome 3, complete sequence
          Length = 227492

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     atctcagaaacaaataggct 55
              ||||||||||||||||||||
Sbjct: 224122 atctcagaaacaaataggct 224103

>gb|AC126682.3| Mus musculus BAC clone RP23-8E3 from 15, complete sequence
          Length = 221352

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 418   catatgatgatagtccctgagctg 441
             |||||||||||||| |||||||||
Sbjct: 29313 catatgatgatagtgcctgagctg 29336

>gb|AC004836.2| Homo sapiens PAC clone RP4-568B10 from 7, complete sequence
          Length = 103694

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   tccctgagctgagccatgag 450
             ||||||||||||||||||||
Sbjct: 50466 tccctgagctgagccatgag 50485

>gb|AC158913.4| Mus musculus chromosome 5, clone RP24-268J3, complete sequence
          Length = 152822

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 376  gtatctgtgtgtgtgcataa 395
            ||||||||||||||||||||
Sbjct: 9530 gtatctgtgtgtgtgcataa 9549

>emb|AL157373.23| Human DNA sequence from clone RP11-456H18 on chromosome 6 Contains two
             novel genes, the 5' end of the HIVEP1 gene for human
             immunodeficiency virus type I enhancer binding protein 1
             and three CpG islands, complete sequence
          Length = 93847

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   ggtatctgtgtgtgtgcata 394
             ||||||||||||||||||||
Sbjct: 35561 ggtatctgtgtgtgtgcata 35542

>emb|AL157703.14| Human DNA sequence from clone RP11-79K3 on chromosome 9p23-24.3,
             complete sequence
          Length = 90278

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 370   atggtggtatctgtgtgtgtgcat 393
             |||||||||| |||||||||||||
Sbjct: 52107 atggtggtatgtgtgtgtgtgcat 52130

>gb|AC158960.4| Mus musculus chromosome 1, clone RP23-315O2, complete sequence
          Length = 176947

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 376    gtatctgtgtgtgtgcataa 395
              ||||||||||||||||||||
Sbjct: 139008 gtatctgtgtgtgtgcataa 138989

>gb|AC157919.5| Mus musculus chromosome 3, clone RP23-131B7, complete sequence
          Length = 190453

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    atctcagaaacaaataggct 55
             ||||||||||||||||||||
Sbjct: 99593 atctcagaaacaaataggct 99612

>gb|AC099773.6| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-335D24, Complete
             Sequence, complete sequence
          Length = 191559

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   ggtatctgtgtgtgtgcata 394
             ||||||||||||||||||||
Sbjct: 84646 ggtatctgtgtgtgtgcata 84665

>gb|AC092306.2| Homo sapiens chromosome 19 clone LLNLR-231D4, complete sequence
          Length = 35144

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ctccatctcagaaacaaata 51
             ||||||||||||||||||||
Sbjct: 19855 ctccatctcagaaacaaata 19874

>gb|AC139053.15| Mus musculus chromosome 1, clone RP23-2I19, complete sequence
          Length = 232850

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   gtatctgtgtgtgtgcataa 395
             ||||||||||||||||||||
Sbjct: 24912 gtatctgtgtgtgtgcataa 24893

>dbj|AK147615.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
            full-length enriched library, clone:M5C1091A08
            product:unclassifiable, full insert sequence
          Length = 6842

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 376  gtatctgtgtgtgtgcataagaag 399
            |||| |||||||||||||||||||
Sbjct: 3488 gtatgtgtgtgtgtgcataagaag 3511

>gb|M94081.1|HUMTCRADCV Human Tcr-C-delta gene, exons 1-4; Tcr-V-delta gene, exons 1-2; T-cell
             receptor alpha (Tcr-alpha) gene, J1-J61 segments; and
             Tcr-C-alpha gene, exons 1-4
          Length = 97630

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   tgtgtgtgtgcataagaaga 400
             ||||||||||||||||||||
Sbjct: 47022 tgtgtgtgtgcataagaaga 47003

>gb|AF335500.1|AF335500 Physarum polycephalum major plasmodial myosin heavy chain (mynP1)
            mRNA, complete cds
          Length = 6484

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  tgaggtcgcgctgttgttgc 466
            ||||||||||||||||||||
Sbjct: 3359 tgaggtcgcgctgttgttgc 3340

>gb|AC109333.28| Homo sapiens chromosome 17, clone RP11-115H24, complete sequence
          Length = 181825

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   tctgtgtgtgtgcataagaa 398
             ||||||||||||||||||||
Sbjct: 78612 tctgtgtgtgtgcataagaa 78593

>gb|AC010138.6| Homo sapiens BAC clone RP11-175H4 from 2, complete sequence
          Length = 160970

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 375    ggtatctgtgtgtgtgcataagaa 398
              ||||| ||||||||||||||||||
Sbjct: 119669 ggtatgtgtgtgtgtgcataagaa 119692

>emb|AJ535718.1|HSA535718 Homo sapiens partial ICOS gene for inducible costimulator protein
          Length = 186585

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 375    ggtatctgtgtgtgtgcataagaa 398
              ||||| ||||||||||||||||||
Sbjct: 139022 ggtatgtgtgtgtgtgcataagaa 138999

>gb|AF225900.1|AF225900 Homo sapiens PAC clone p61e2, complete sequence
          Length = 94645

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 375   ggtatctgtgtgtgtgcataagaa 398
             ||||| ||||||||||||||||||
Sbjct: 90501 ggtatgtgtgtgtgtgcataagaa 90524

>gb|AC171557.7| Mus musculus chromosome 7, clone RP24-62E17, complete sequence
          Length = 163762

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   tggtatctgtgtgtgtgcat 393
             ||||||||||||||||||||
Sbjct: 34996 tggtatctgtgtgtgtgcat 34977

>gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complete sequence
          Length = 191764

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 376   gtatctgtgtgtgtgcataagaag 399
             |||| |||||||||||||||||||
Sbjct: 77289 gtatgtgtgtgtgtgcataagaag 77266

>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome 14
          Length = 1071646

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 381     tgtgtgtgtgcataagaaga 400
               ||||||||||||||||||||
Sbjct: 1013408 tgtgtgtgtgcataagaaga 1013389

>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold
          Length = 1595145

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    tggtggtatctgtgtgtgtg 390
              ||||||||||||||||||||
Sbjct: 987020 tggtggtatctgtgtgtgtg 987001

>emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chromosome 2, complete
             sequence
          Length = 219340

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   tgtgtgtgtgcataagaaga 400
             ||||||||||||||||||||
Sbjct: 35179 tgtgtgtgtgcataagaaga 35198


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,813,250
Number of Sequences: 3902068
Number of extensions: 4813250
Number of successful extensions: 109772
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109684
Number of HSP's gapped (non-prelim): 88
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)