ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart10c08 |
|---|---|
| Clone Library Name | barley_pub |
>SPG21_BRARE (Q6PC62) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 311 Score = 38.1 bits (87), Expect = 0.015 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -3 Query: 532 GGDFPFLSRPDEVNLYLQLHLRR 464 GG+FP+L R EVNLY+Q+HLR+ Sbjct: 253 GGNFPYLCRSAEVNLYIQIHLRQ 275
>SPG21_XENLA (Q5FVD6) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 310 Score = 35.8 bits (81), Expect = 0.076 Identities = 14/23 (60%), Positives = 20/23 (86%) Frame = -3 Query: 532 GGDFPFLSRPDEVNLYLQLHLRR 464 GG+FP+L R EV+LY+Q+HLR+ Sbjct: 253 GGNFPYLCRSAEVSLYVQIHLRQ 275
>SPG21_PONPY (Q5RES2) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 308 Score = 35.4 bits (80), Expect = 0.100 Identities = 14/21 (66%), Positives = 18/21 (85%) Frame = -3 Query: 532 GGDFPFLSRPDEVNLYLQLHL 470 GG+FP+L R EVNLY+Q+HL Sbjct: 253 GGNFPYLCRSAEVNLYVQIHL 273
>SPG21_MOUSE (Q9CQC8) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) (Acid cluster protein 33) Length = 308 Score = 35.4 bits (80), Expect = 0.100 Identities = 14/21 (66%), Positives = 18/21 (85%) Frame = -3 Query: 532 GGDFPFLSRPDEVNLYLQLHL 470 GG+FP+L R EVNLY+Q+HL Sbjct: 253 GGNFPYLCRSAEVNLYVQIHL 273
>SPG21_MACFA (Q4R5H6) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 308 Score = 35.4 bits (80), Expect = 0.100 Identities = 14/21 (66%), Positives = 18/21 (85%) Frame = -3 Query: 532 GGDFPFLSRPDEVNLYLQLHL 470 GG+FP+L R EVNLY+Q+HL Sbjct: 253 GGNFPYLCRSAEVNLYVQIHL 273
>SPG21_HUMAN (Q9NZD8) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein) (Acid cluster protein 33) Length = 308 Score = 35.4 bits (80), Expect = 0.100 Identities = 14/21 (66%), Positives = 18/21 (85%) Frame = -3 Query: 532 GGDFPFLSRPDEVNLYLQLHL 470 GG+FP+L R EVNLY+Q+HL Sbjct: 253 GGNFPYLCRSAEVNLYVQIHL 273
>SPG21_BOVIN (Q8MJJ1) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 308 Score = 35.4 bits (80), Expect = 0.100 Identities = 14/21 (66%), Positives = 18/21 (85%) Frame = -3 Query: 532 GGDFPFLSRPDEVNLYLQLHL 470 GG+FP+L R EVNLY+Q+HL Sbjct: 253 GGNFPYLCRSAEVNLYVQIHL 273
>NNP1_MOUSE (P56183) NNP-1 protein (Novel nuclear protein 1) (Nop52)| Length = 494 Score = 34.3 bits (77), Expect = 0.22 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -3 Query: 433 QGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSES-GPPNSDG 278 +G G G ++D +DG + DD DDG S G DG + +S G + DG Sbjct: 242 EGEASDGDDGEASDGDDGEASDD---DDGEASDGGDGDVADSDDSDGADDDDG 291
>NDR1B_XENLA (Q7ZWV3) Protein NDRG1-B (xNDRG1-B)| Length = 396 Score = 32.7 bits (73), Expect = 0.65 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Frame = -3 Query: 529 GDFPFLSRPDEVNLYLQLHLRRVGVEPRPDLVQGFTRGGSSGSSNDHEDGNSFDDHTRD- 353 G FP + +P ++ + ++ +G P + + S +S+ +DGN HT + Sbjct: 291 GGFPQVVQPAKLAEAFKYFVQGMGYMPAASMTRLMRSRTGSAASSSSQDGNRSRSHTNEG 350 Query: 352 --------DGHRS---SGRDGRKTERSESGPPNSDGLVPTSI 260 DG+RS +G R +++ NSD P S+ Sbjct: 351 SRSRSQTGDGNRSRAHTGDGNRSRSHTDTNNVNSDHNTPKSM 392
>NDRG1_XENTR (Q66IG4) Protein NDRG1| Length = 395 Score = 32.7 bits (73), Expect = 0.65 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Frame = -3 Query: 529 GDFPFLSRPDEVNLYLQLHLRRVGVEPRPDLVQGFTRGGSSGSSNDHEDGNSFDDHTRD- 353 G FP + +P ++ + ++ +G P + + S +S+ +DGN HT + Sbjct: 290 GGFPQVVQPAKLAEAFKYFVQGMGYMPAASMTRLMRSRTGSAASSSSQDGNRSRSHTNEG 349 Query: 352 --------DGHRS---SGRDGRKTERSESGPPNSDGLVPTSI 260 DG+RS +G R ++S NS+ P S+ Sbjct: 350 SRSRSHTGDGNRSRAHTGDGNRSRSHTDSNNTNSEHNTPKSM 391
>DVL2_MOUSE (Q60838) Segment polarity protein dishevelled homolog DVL-2| (Dishevelled-2) (DSH homolog 2) Length = 736 Score = 32.3 bits (72), Expect = 0.85 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = -3 Query: 436 VQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNS 284 + +T GG S SS H +G+ TR DG +GR GR ER+ S Sbjct: 571 LSSYTYGGGSASS-QHSEGSRSSGSTRSDG--GAGRTGRPEERAPESKSGS 618
>DVL2_HUMAN (O14641) Segment polarity protein dishevelled homolog DVL-2| (Dishevelled-2) (DSH homolog 2) Length = 736 Score = 32.3 bits (72), Expect = 0.85 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = -3 Query: 436 VQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNS 284 + +T GG S SS H +G+ TR DG +GR GR ER+ S Sbjct: 571 LSSYTYGGGSASS-QHSEGSRSSGSTRSDG--GAGRTGRPEERAPESKSGS 618
>MSL3_DROVI (Q9NBL2) Protein male-specific lethal-3| Length = 543 Score = 32.3 bits (72), Expect = 0.85 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = -3 Query: 484 LQLHLRRVGVEPRPDLVQGFTRGGSS--GSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTE 311 L + L + P+P+L RG S GS N DG+ + +RD+ SSGR ++ + Sbjct: 156 LDISLAHLPATPKPELPAQQKRGARSRDGSGNRSRDGSG--NRSRDN---SSGRK-KQRD 209 Query: 310 RSESGPPNSDG 278 +S+ G N DG Sbjct: 210 KSKGGDKNDDG 220
>Y3064_ERWCT (Q6D2N1) UPF0209 protein ECA3064| Length = 675 Score = 32.0 bits (71), Expect = 1.1 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 29 NYLRLCNLFCSKKNKQPQSCLRHLQFINIQTY 124 N+L L F + +QPQ+ LRHL FI+ + + Sbjct: 72 NFLTLWQAFAHFRQQQPQATLRHLHFISFEKF 103
>NDR1A_XENLA (Q641F2) Protein NDRG1-A (xNDRG1-A)| Length = 396 Score = 31.6 bits (70), Expect = 1.4 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 12/102 (11%) Frame = -3 Query: 529 GDFPFLSRPDEVNLYLQLHLRRVGVEPRPDLVQGFTRGGSSGSSNDHEDGNSFDDHTRD- 353 G FP + +P ++ + ++ +G P + + S +S+ +DGN HT + Sbjct: 291 GGFPQVIQPAKLAEAFKYFVQGMGYMPAASMTRLMRSRTGSAASSSSQDGNRSRSHTNEG 350 Query: 352 --------DGHRS---SGRDGRKTERSESGPPNSDGLVPTSI 260 DG+RS +G R +++ NSD P S+ Sbjct: 351 SRSRSHTGDGNRSRAHTGDGNRSRSHTDTNNINSDQNSPKSM 392
>TRK1_YEAST (P12685) High-affinity potassium transport protein| Length = 1235 Score = 31.2 bits (69), Expect = 1.9 Identities = 19/70 (27%), Positives = 32/70 (45%) Frame = -3 Query: 490 LYLQLHLRRVGVEPRPDLVQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTE 311 L L + +RR V L GG ++ +DGN DD ++ H +G+ ++ Sbjct: 985 LPLAISIRRTNVYEEQSLGLYGDMGGEPEDTDTEDDGNDEDDDEENESH-----EGQSSQ 1039 Query: 310 RSESGPPNSD 281 RS S N++ Sbjct: 1040 RSSSNNNNNN 1049
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 30.4 bits (67), Expect = 3.2 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = -3 Query: 430 GFTRGGSSGSSND---HEDGNSFDDHTRDDGHRS-SGRDGRKTERSESGPPNSDG 278 G G SSGSS+D + G+S D D G +S S D + + ++ PP DG Sbjct: 29 GSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGSQSESESDTSRENKVQAKPPKVDG 83
>DNMT1_PARLI (Q27746) DNA (cytosine-5)-methyltransferase PliMCI (EC 2.1.1.37)| (Dnmt1) (DNA methyltransferase PliMCI) (DNA MTase PliMCI) (MCMT) (M.PliMCI) Length = 1612 Score = 30.4 bits (67), Expect = 3.2 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = -3 Query: 430 GFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNSD 281 G T GG SS+ E G S + D +SG+ G K ++ G D Sbjct: 135 GHTNGGYVQSSSQEETGTSQSEEEMDMDTPTSGKGGSKKKKKSKGSGGGD 184
>DHX9_PONPY (Q5R874) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA| helicase II) (NDH II) (DEAH box protein 9) Length = 1269 Score = 30.4 bits (67), Expect = 3.2 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Frame = -3 Query: 514 LSRPDEVNLYLQLHLRRVGVEPRP------DLVQGFTRGGSSGSSNDHEDGNSFDDHTRD 353 +SRP + L + R G PRP D G+ RGGSS S + G S Sbjct: 1138 ISRPSAAGINLMIGSTRYGDGPRPPKMARYDNGSGYRRGGSSYSGGGYGSGYS------S 1191 Query: 352 DGHRSSGRDG 323 G+ S G G Sbjct: 1192 GGYGSGGYGG 1201
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 30.4 bits (67), Expect = 3.2 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = -3 Query: 412 SSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPP 290 + +S+DHE+ ++ + G +S +GR + R SG P Sbjct: 163 TKSNSSDHENSEDYEQGQHESGFSNSSGNGRPSSRKASGFP 203
>PRR73_ORYSA (Q689G4) Two-component response regulator-like PRR73| (Pseudo-response regulator 73) (OsPRR73) Length = 767 Score = 30.0 bits (66), Expect = 4.2 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = -3 Query: 412 SSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNS 284 +SGS+ND+ED DD+ DD S G + R + SG +S Sbjct: 232 NSGSNNDNEDD---DDNDEDDDDLSVGHNARDGSDNGSGTQSS 271
>GAGJ_DROFU (P21331) Nucleic-acid-binding protein from mobile element jockey| (ORF1) Length = 574 Score = 30.0 bits (66), Expect = 4.2 Identities = 23/72 (31%), Positives = 32/72 (44%) Frame = +1 Query: 82 IMSQASTIHQYTNLQTQNKEEIPITQNT*MNSISCCVTSWQQ*RDRTSSNAVAPLTGLAL 261 I S AST +Q +L + P + S +C VT+ Q TS+ VA G + Sbjct: 38 IASGASTSNQAASLLANSAFNYPSVTTSSDTSFTCTVTTSQASCASTSTYTVAARVGPNI 97 Query: 262 CLLVPVHLN*VA 297 C PV N V+ Sbjct: 98 CSTTPVGNNSVS 109
>DHX9_HUMAN (Q08211) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA| helicase II) (NDH II) (DEAH box protein 9) Length = 1270 Score = 30.0 bits (66), Expect = 4.2 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Frame = -3 Query: 514 LSRPDEVNLYLQLHLRRVGVEPRP------DLVQGFTRGGSSGSSNDHEDGNSFDDHTRD 353 +SRP + L + R G PRP D G+ RGGSS S + G S Sbjct: 1138 ISRPSAAGINLMIGSTRYGDGPRPPKMARYDNGSGYRRGGSSYSGGGYGGGYS------S 1191 Query: 352 DGHRSSGRDG 323 G+ S G G Sbjct: 1192 GGYGSGGYGG 1201
>CWC21_NEUCR (Q7RYH7) Pre-mRNA-splicing factor cwc-21| Length = 344 Score = 29.6 bits (65), Expect = 5.5 Identities = 18/58 (31%), Positives = 22/58 (37%) Frame = -3 Query: 451 PRPDLVQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNSDG 278 P P G + G G D G F RD+G R + R+ R R PP G Sbjct: 174 PPPPAPSGPSGGNDRGGDRDRGRGRGFGRRDRDEG-RLNSRERRAPPRDWDRPPTPRG 230
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 29.6 bits (65), Expect = 5.5 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -3 Query: 334 GRDGRKTERSESGPPNSDGLV 272 GRDG K ++ ++GPP GLV Sbjct: 325 GRDGEKGQKGDTGPPGPPGLV 345
>GALT2_HUMAN (Q10471) Polypeptide N-acetylgalactosaminyltransferase 2 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 2) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 2) (Polypeptide GalNAc transferase 2) (GalNAc-T2) (pp-GaNTase 2) Length = 571 Score = 29.6 bits (65), Expect = 5.5 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -3 Query: 418 GGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPP 290 GG+ G + ED N D + D H S+G + K + E+ PP Sbjct: 33 GGAGGGAGRKEDWNEIDPIKKKDLHHSNGEE--KAQSMETLPP 73
>RTOA_DICDI (P54681) Protein rtoA (Ratio-A)| Length = 400 Score = 29.3 bits (64), Expect = 7.2 Identities = 15/51 (29%), Positives = 21/51 (41%) Frame = -3 Query: 430 GFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNSDG 278 G + GS SS G+ + + G SSG +E S +SDG Sbjct: 256 GSSNSGSESSSGSSNSGSESSSGSSNSGSESSGSSNSGSESSSDSGSSSDG 306
>DMP1_BOVIN (Q95120) Dentin matrix acidic phosphoprotein 1 precursor (Dentin| matrix protein 1) (DMP-1) Length = 510 Score = 29.3 bits (64), Expect = 7.2 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -3 Query: 451 PRPDLVQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSES 299 P D + + GGS G S+ H DG+ FD D+G +S ++ER S Sbjct: 185 PDSDSEEHWVGGGSEGDSS-HGDGSEFD----DEGMQSDDPGAYRSERGNS 230
>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)| Length = 1027 Score = 29.3 bits (64), Expect = 7.2 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = -3 Query: 334 GRDGRKTERSESGPPNSDG 278 GRDG K ER E GPP G Sbjct: 760 GRDGTKGERGEDGPPGVSG 778
>VGLC_PRVIF (P06024) Glycoprotein GIII precursor| Length = 479 Score = 29.3 bits (64), Expect = 7.2 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = +3 Query: 225 FQCSCATHGSSTMLVGTSPSELGGPDSERSVLRPSLPELRCPSSLVWSSKLFPSSWSFEL 404 + + A S+T + T+P+ GG +S L PS P P+S P + + Sbjct: 15 YAAAIAAAPSTTTALDTTPNGGGGGNSSEGELSPSPPPTPAPAS--------PEAGAVST 66 Query: 405 PELPP 419 P +PP Sbjct: 67 PPVPP 71
>DHX9_XENLA (Q68FK8) ATP-dependent RNA helicase A-like protein (EC 3.6.1.-)| (Nuclear DNA helicase II) (NDH II) (DEAH box protein 9) Length = 1262 Score = 29.3 bits (64), Expect = 7.2 Identities = 19/74 (25%), Positives = 28/74 (37%) Frame = -3 Query: 514 LSRPDEVNLYLQLHLRRVGVEPRPDLVQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSS 335 +S+P + L + R G PRP + F G + G + G R + Sbjct: 1140 ISKPSTAGISLVMGNSRFGDGPRPPKMARFDSGFQGNRGRGYHGG-----YNSGGGFRGA 1194 Query: 334 GRDGRKTERSESGP 293 G G + R SGP Sbjct: 1195 GNRGFRGSRGGSGP 1208
>DCC_MOUSE (P70211) Netrin receptor DCC precursor (Tumor suppressor protein| DCC) Length = 1447 Score = 29.3 bits (64), Expect = 7.2 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 488 VPSATLKASWSRTKTGSSPGFHTGW*LRELKRPRR 384 V S ++K SW +G+ GF TG+ +R K RR Sbjct: 634 VNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRR 668
>DCC_HUMAN (P43146) Netrin receptor DCC precursor (Tumor suppressor protein| DCC) (Colorectal cancer suppressor) Length = 1447 Score = 29.3 bits (64), Expect = 7.2 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 488 VPSATLKASWSRTKTGSSPGFHTGW*LRELKRPRR 384 V S ++K SW +G+ GF TG+ +R K RR Sbjct: 634 VNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRR 668
>GRC3_CRYNE (Q5KI47) Protein GRC3| Length = 744 Score = 29.3 bits (64), Expect = 7.2 Identities = 18/62 (29%), Positives = 23/62 (37%) Frame = -3 Query: 445 PDLVQGFTRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNSDGLVPT 266 PD G + S D + F+D DG R + S SGP S L+P Sbjct: 87 PDSDGGTSSSSVGDSDEDMAQEDEFEDRREVDGERDQRKVSVAANMSSSGPFKSLDLMPV 146 Query: 265 SI 260 I Sbjct: 147 DI 148
>SWI6_KLULA (P40418) Regulatory protein SWI6 (Cell-cycle box factor, chain| SWI6) (Trans-acting activator of HO endonuclease gene) (MBF subunit P90) Length = 769 Score = 28.9 bits (63), Expect = 9.3 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Frame = -3 Query: 409 SGSSN--DHEDGNSFDDH-TRDDGHRSSGRDGRKTE 311 SGS N DH+D N + + DDG ++ +GRKT+ Sbjct: 92 SGSENLTDHDDDNEANHNGVEDDGQKTPENNGRKTD 127
>DPOL_HHBV (P13846) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 788 Score = 28.9 bits (63), Expect = 9.3 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Frame = -3 Query: 421 RGGSSGSSNDHEDGNSFDDH-TRDDGHRSSGRDGRKTERSESGPPNSDGLVPTSIVLDP 248 + SS H +G H TRD HR SGR T R +S + P S P Sbjct: 234 KNDSSRIFGAHNNGRKISYHSTRDGSHRLSGRTSDPTSRGALAGGDSTPIGPGSTAAHP 292
>ADRA2_LABOS (Q91081) Alpha-2 adrenergic receptor (Alpha-2 adrenoceptor)| (Alpha-2 adrenoreceptor) Length = 432 Score = 28.9 bits (63), Expect = 9.3 Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 19/86 (22%) Frame = -3 Query: 460 GVEPRPDLVQGFTRGGSSGSSNDHED-------------------GNSFDDHTRDDGHRS 338 G EPRPD V G + +S H D G DD D+ S Sbjct: 227 GKEPRPDGVTQTENGLNKANSPCHGDRENGHCQCPPTPSQRTVTIGQQTDDADMDESFSS 286 Query: 337 SGRDGRKTERSESGPPNSDGLVPTSI 260 G+ G K +R +S GL +SI Sbjct: 287 EGK-GHKPQRQDSQRAKRPGLKKSSI 311
>EX5A_BUCAI (P57530) Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)| Length = 602 Score = 28.9 bits (63), Expect = 9.3 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Frame = +1 Query: 22 TTKLSEIMQF----ILFKEKQATTIMSQASTIHQYTNLQTQNKEEIPITQNT*MNSISC 186 TT L+EI++ + F EK+ ++ S A+TIHQ +Q I+Q + N +C Sbjct: 208 TTHLNEILKNNIFDLYFSEKEKCSLPSTATTIHQLLGIQ-------KISQKSFFNKSNC 259
>DBP6_DEBHA (Q6BPT8) ATP-dependent RNA helicase DBP6 (EC 3.6.1.-)| Length = 679 Score = 28.9 bits (63), Expect = 9.3 Identities = 15/49 (30%), Positives = 19/49 (38%) Frame = -3 Query: 424 TRGGSSGSSNDHEDGNSFDDHTRDDGHRSSGRDGRKTERSESGPPNSDG 278 T SSGS +D +S D + S D SES P + G Sbjct: 41 TSSSSSGSDSDSSSDSSSDSSSDSSSESDSDSDSSSESESESEPESESG 89
>SRP54_RICCN (Q92J55) Signal recognition particle protein (Fifty-four homolog)| Length = 449 Score = 28.9 bits (63), Expect = 9.3 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = -1 Query: 372 LMTILEMMGTVVQEEMAVRRSA-LNQGHLIQMDWYQQA*C*TREWRNCIGTGSISSLLPG 196 +++ +E ++V E A + +A L +G D+ QQ R + G GSI S+LPG Sbjct: 301 IISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQM----RSIKKMGGFGSILSMLPG 356 Query: 195 SYTATDGI 172 S D I Sbjct: 357 SGKIMDQI 364 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,423,375 Number of Sequences: 219361 Number of extensions: 1594717 Number of successful extensions: 5195 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 4849 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5180 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
