ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN434_HUMAN (Q9NX65) Zinc finger protein 434 31 1.5
23CL_HUMAN (Q13412) Pre-T/NK cell-associated protein 3Cl 28 9.9

>ZN434_HUMAN (Q9NX65) Zinc finger protein 434|
          Length = 485

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = +2

Query: 146 SRLYKARSGHPRDTRERQCHDDRIHQSDK*PSQEAIKRK----RPAACTRRHCGDPC 304
           S L K     P  T  RQC +      +K PSQE +  +    R  ACT   CG  C
Sbjct: 237 SELQKGLESEP--TSRRQCRNSPGESEEKTPSQEKMSHQSFCARDKACTHILCGKNC 291



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>3CL_HUMAN (Q13412) Pre-T/NK cell-associated protein 3Cl|
          Length = 51

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 315 QEQPQGSPQWR---RVQAAGRLRLIASWLGYLSL*WMRSSWHCRSRVS 181
           QE       WR   R  ++ R + I SWL YLS   + +SW+C+ ++S
Sbjct: 5   QETVYSCEYWRTFKRYFSSWRFK-IRSWLTYLSWGLLCTSWYCKVKMS 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,772,209
Number of Sequences: 219361
Number of extensions: 650362
Number of successful extensions: 1241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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