ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart10b08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 147 bits (74), Expect = 4e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 248 agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 307 ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| Sbjct: 2976971 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2976912 Query: 308 acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 367 | ||||||||||||||| || ||||||| |||||||||| ||||||||| || ||||||| Sbjct: 2976911 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2976852 Query: 368 gcgtacttcgccag 381 ||||||||| |||| Sbjct: 2976851 gcgtacttctccag 2976838 Score = 147 bits (74), Expect = 4e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 248 agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 307 ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| Sbjct: 2948575 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2948516 Query: 308 acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 367 | ||||||||||||||| || ||||||| |||||||||| ||||||||| || ||||||| Sbjct: 2948515 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2948456 Query: 368 gcgtacttcgccag 381 ||||||||| |||| Sbjct: 2948455 gcgtacttctccag 2948442 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 415 gaaggccacgccgaggcaccgggcgaggacgacgccatcctcgagcgccgcgcagccgcc 474 ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2976786 gaaggcctcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgcc 2976727 Query: 475 ctggccgagctccggcgtcatcgggtggaa 504 |||||||||||| || ||| |||||||||| Sbjct: 2976726 ctggccgagctcgggggtcgtcgggtggaa 2976697 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 415 gaaggccacgccgaggcaccgggcgaggacgacgccatcctcgagcgccgcgcagccgcc 474 ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2948390 gaaggcctcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgcc 2948331 Query: 475 ctggccgagctccggcgtcatcgggtggaa 504 |||||||||||| || ||| |||||||||| Sbjct: 2948330 ctggccgagctcgggggtcgtcgggtggaa 2948301 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 443 acgacgccatcctcgagcgccgcgcagccgccctggccgagctccggcgtcatcgggtg 501 |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct: 2941687 acgacgccgtcctcgagcgccgcgcagccgccctggccaaggtcaggcgtcatcgggtg 2941629 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 443 acgacgccatcctcgagcgccgcgcagccgccctggccgagctccggcgtcatcgggtg 501 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 2933973 acgacgccgtcctccagcgccgcgcagccgccctgccccaggtcgggcgtcatcgggtg 2933915 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 443 acgacgccatcctcgagcgccgcgcagccgccctggccgagctccggcgtcatcgggtg 501 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 2924633 acgacgccgtcctccagcgccgcgcagccgccctgccccaggtcgggcgtcatcgggtg 2924575 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 423 cgccgaggcaccgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||||||| || ||||||||| | ||||| ||||||| ||| ||||||| | | Sbjct: 2945511 cgccgaggcacctcgccaggacgacggcgtcctccagcgccgtgcacgcgccctgcgcca 2945452 Query: 483 gctccggcgtcatcgggtggaacgcg 508 | ||||||||| ||||||||| |||| Sbjct: 2945451 ggtccggcgtcgtcgggtggagcgcg 2945426 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 299 ctctgctgcacgaagccgacgacgta 324 ||||||||||||| |||||||||||| Sbjct: 2941843 ctctgctgcacgatgccgacgacgta 2941818
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 147 bits (74), Expect = 4e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 248 agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 307 ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| Sbjct: 114458 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 114399 Query: 308 acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 367 | ||||||||||||||| || ||||||| |||||||||| ||||||||| || ||||||| Sbjct: 114398 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 114339 Query: 368 gcgtacttcgccag 381 ||||||||| |||| Sbjct: 114338 gcgtacttctccag 114325 Score = 147 bits (74), Expect = 4e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 248 agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 307 ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| Sbjct: 86062 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 86003 Query: 308 acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 367 | ||||||||||||||| || ||||||| |||||||||| ||||||||| || ||||||| Sbjct: 86002 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 85943 Query: 368 gcgtacttcgccag 381 ||||||||| |||| Sbjct: 85942 gcgtacttctccag 85929 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 415 gaaggccacgccgaggcaccgggcgaggacgacgccatcctcgagcgccgcgcagccgcc 474 ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 114273 gaaggcctcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgcc 114214 Query: 475 ctggccgagctccggcgtcatcgggtggaa 504 |||||||||||| || ||| |||||||||| Sbjct: 114213 ctggccgagctcgggggtcgtcgggtggaa 114184 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 415 gaaggccacgccgaggcaccgggcgaggacgacgccatcctcgagcgccgcgcagccgcc 474 ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 85877 gaaggcctcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgcc 85818 Query: 475 ctggccgagctccggcgtcatcgggtggaa 504 |||||||||||| || ||| |||||||||| Sbjct: 85817 ctggccgagctcgggggtcgtcgggtggaa 85788 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 443 acgacgccatcctcgagcgccgcgcagccgccctggccgagctccggcgtcatcgggtg 501 |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct: 79174 acgacgccgtcctcgagcgccgcgcagccgccctggccaaggtcaggcgtcatcgggtg 79116 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 443 acgacgccatcctcgagcgccgcgcagccgccctggccgagctccggcgtcatcgggtg 501 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 71460 acgacgccgtcctccagcgccgcgcagccgccctgccccaggtcgggcgtcatcgggtg 71402 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 443 acgacgccatcctcgagcgccgcgcagccgccctggccgagctccggcgtcatcgggtg 501 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 62120 acgacgccgtcctccagcgccgcgcagccgccctgccccaggtcgggcgtcatcgggtg 62062 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 423 cgccgaggcaccgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||||||| || ||||||||| | ||||| ||||||| ||| ||||||| | | Sbjct: 82998 cgccgaggcacctcgccaggacgacggcgtcctccagcgccgtgcacgcgccctgcgcca 82939 Query: 483 gctccggcgtcatcgggtggaacgcg 508 | ||||||||| ||||||||| |||| Sbjct: 82938 ggtccggcgtcgtcgggtggagcgcg 82913 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 299 ctctgctgcacgaagccgacgacgta 324 ||||||||||||| |||||||||||| Sbjct: 79330 ctctgctgcacgatgccgacgacgta 79305
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 147 bits (74), Expect = 4e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 248 agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 307 ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| Sbjct: 2977082 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2977023 Query: 308 acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 367 | ||||||||||||||| || ||||||| |||||||||| ||||||||| || ||||||| Sbjct: 2977022 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2976963 Query: 368 gcgtacttcgccag 381 ||||||||| |||| Sbjct: 2976962 gcgtacttctccag 2976949 Score = 147 bits (74), Expect = 4e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 248 agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 307 ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| Sbjct: 2948686 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2948627 Query: 308 acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 367 | ||||||||||||||| || ||||||| |||||||||| ||||||||| || ||||||| Sbjct: 2948626 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2948567 Query: 368 gcgtacttcgccag 381 ||||||||| |||| Sbjct: 2948566 gcgtacttctccag 2948553 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 415 gaaggccacgccgaggcaccgggcgaggacgacgccatcctcgagcgccgcgcagccgcc 474 ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2976897 gaaggcctcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgcc 2976838 Query: 475 ctggccgagctccggcgtcatcgggtggaa 504 |||||||||||| || ||| |||||||||| Sbjct: 2976837 ctggccgagctcgggggtcgtcgggtggaa 2976808 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 415 gaaggccacgccgaggcaccgggcgaggacgacgccatcctcgagcgccgcgcagccgcc 474 ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2948501 gaaggcctcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgcc 2948442 Query: 475 ctggccgagctccggcgtcatcgggtggaa 504 |||||||||||| || ||| |||||||||| Sbjct: 2948441 ctggccgagctcgggggtcgtcgggtggaa 2948412 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 443 acgacgccatcctcgagcgccgcgcagccgccctggccgagctccggcgtcatcgggtg 501 |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct: 2941798 acgacgccgtcctcgagcgccgcgcagccgccctggccaaggtcaggcgtcatcgggtg 2941740 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 443 acgacgccatcctcgagcgccgcgcagccgccctggccgagctccggcgtcatcgggtg 501 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 2934084 acgacgccgtcctccagcgccgcgcagccgccctgccccaggtcgggcgtcatcgggtg 2934026 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 443 acgacgccatcctcgagcgccgcgcagccgccctggccgagctccggcgtcatcgggtg 501 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 2924744 acgacgccgtcctccagcgccgcgcagccgccctgccccaggtcgggcgtcatcgggtg 2924686 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 423 cgccgaggcaccgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||||||| || ||||||||| | ||||| ||||||| ||| ||||||| | | Sbjct: 2945622 cgccgaggcacctcgccaggacgacggcgtcctccagcgccgtgcacgcgccctgcgcca 2945563 Query: 483 gctccggcgtcatcgggtggaacgcg 508 | ||||||||| ||||||||| |||| Sbjct: 2945562 ggtccggcgtcgtcgggtggagcgcg 2945537 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 299 ctctgctgcacgaagccgacgacgta 324 ||||||||||||| |||||||||||| Sbjct: 2941954 ctctgctgcacgatgccgacgacgta 2941929
>dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A09, full insert sequence Length = 1661 Score = 139 bits (70), Expect = 1e-29 Identities = 118/134 (88%) Strand = Plus / Minus Query: 248 agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 307 ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| Sbjct: 1274 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 1215 Query: 308 acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 367 | ||||||||||||||| || |||||| |||||||||| ||||||||| || ||||||| Sbjct: 1214 atgaagccgacgacgtaggccgccgtggtcagccggatgccgcgccaccgcctctcctcg 1155 Query: 368 gcgtacttcgccag 381 ||||||||| |||| Sbjct: 1154 gcgtacttctccag 1141 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 415 gaaggccacgccgaggcaccgggcgaggacgacgccatcctcgagcgccgcgcagccgcc 474 ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1089 gaaggcctcgctgaggcaccgggcgaggacgacgccgtcctcgagcgccgcgcagccgcc 1030 Query: 475 ctggccgagctccggcgtcatcgggtggaa 504 |||||||||||| || ||| |||||||||| Sbjct: 1029 ctggccgagctcgggggtcgtcgggtggaa 1000
>dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B02, full insert sequence Length = 1590 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 443 acgacgccatcctcgagcgccgcgcagccgccctggccgagctccggcgtcatcgggtg 501 |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct: 1202 acgacgccgtcctcgagcgccgcgcagccgccctggccaaggtcaggcgtcatcgggtg 1144 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 299 ctctgctgcacgaagccgacgacgta 324 ||||||||||||| |||||||||||| Sbjct: 1359 ctctgctgcacgatgccgacgacgta 1334
>dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118I15, full insert sequence Length = 1518 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 423 cgccgaggcaccgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||||||| || ||||||||| | ||||| ||||||| ||| ||||||| | | Sbjct: 1058 cgccgaggcacctcgccaggacgacggcgtcctccagcgccgtgcacgcgccctgcgcca 999 Query: 483 gctccggcgtcatcgggtggaacgcg 508 | ||||||||| ||||||||| |||| Sbjct: 998 ggtccggcgtcgtcgggtggagcgcg 973
>ref|XM_466255.1| Oryza sativa (japonica cultivar-group), mRNA Length = 870 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 611 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 563
>ref|XM_466252.1| Oryza sativa (japonica cultivar-group), mRNA Length = 870 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 611 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 563
>ref|XM_466248.1| Oryza sativa (japonica cultivar-group), mRNA Length = 870 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 611 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 563
>ref|XM_466244.1| Oryza sativa (japonica cultivar-group), mRNA Length = 870 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 611 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 563
>ref|XM_466240.1| Oryza sativa (japonica cultivar-group), mRNA Length = 870 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 611 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 563
>ref|XM_466237.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1257 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 998 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 950
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 21310876 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 21310828 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 21301848 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 21301800 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 21292822 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 21292774 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 21283796 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 21283748 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 21274770 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 21274722 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 21265744 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 21265696 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||||| | | ||||||||||||||| Sbjct: 16104349 cgggcgagcacgacggcgtcctccagcgcggaggagccgccctggccga 16104301
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0435E12 Length = 143188 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 93411 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 93363 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 84383 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 84335 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 75357 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 75309 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 66331 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 66283 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 57305 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 57257 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||| ||||| ||||||||||||||| Sbjct: 48279 cgggcgagcacgacggcgtcctccagccccgcggagccgccctggccga 48231
>gb|AY459342.1| Oryza sativa (japonica cultivar-group) clone CLC13210-1 R2R3-MYB gene region Length = 5648 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 469 gccgccctggccgagctccggcg 491 ||||||||||||||||||||||| Sbjct: 1653 gccgccctggccgagctccggcg 1631
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 469 gccgccctggccgagctccggcg 491 ||||||||||||||||||||||| Sbjct: 716799 gccgccctggccgagctccggcg 716777
>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC clone:P0029D06 Length = 150120 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 469 gccgccctggccgagctccggcg 491 ||||||||||||||||||||||| Sbjct: 123227 gccgccctggccgagctccggcg 123205
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 456 cgagcgccgcgcagccgccctggccgagct 485 |||||||| ||| ||||||||||||||||| Sbjct: 679800 cgagcgcctcgccgccgccctggccgagct 679771 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 tgaccagccggatggcgcgc 352 |||||||||||||||||||| Sbjct: 1479193 tgaccagccggatggcgcgc 1479174
>ref|XM_465581.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1406 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||||| | | ||||||||||||||| Sbjct: 1014 cgggcgagcacgacggcgtcctccagcgcggaggagccgccctggccga 966
>gb|AE005871.1| Caulobacter crescentus CB15 section 197 of 359 of the complete genome Length = 10070 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 gccggcggcgaaggccacgcc 426 ||||||||||||||||||||| Sbjct: 5266 gccggcggcgaaggccacgcc 5286
>gb|AC062016.5| Homo sapiens BAC clone RP11-59P4 from 2, complete sequence Length = 187799 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 aaaaggaaacaaatcttaaag 24 ||||||||||||||||||||| Sbjct: 166903 aaaaggaaacaaatcttaaag 166923
>dbj|AP004787.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0403C01 Length = 145635 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||||| | | ||||||||||||||| Sbjct: 102583 cgggcgagcacgacggcgtcctccagcgcggaggagccgccctggccga 102535
>dbj|AK110913.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-C04, full insert sequence Length = 1408 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 434 cgggcgaggacgacgccatcctcgagcgccgcgcagccgccctggccga 482 |||||||| |||||| | ||||| ||||| | | ||||||||||||||| Sbjct: 1014 cgggcgagcacgacggcgtcctccagcgcggaggagccgccctggccga 966
>gb|AE001438.3| Clostridium acetobutylicum ATCC 824 megaplasmid pSOL1, complete sequence Length = 192000 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 gaaaaggaaacaaatcttaaa 23 ||||||||||||||||||||| Sbjct: 20866 gaaaaggaaacaaatcttaaa 20886
>gb|AC147646.2| Gallus gallus BAC clone CH261-13L1 from chromosome unknown, complete sequence Length = 238934 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 tgtaagataattatttcacat 75 ||||||||||||||||||||| Sbjct: 170214 tgtaagataattatttcacat 170234
>gb|AC163351.2| Mus musculus BAC clone RP23-150D4 from chromosome 13, complete sequence Length = 214062 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 ttcacatctggatctgatagcaga 92 ||||||||||||||||| |||||| Sbjct: 104873 ttcacatctggatctgaaagcaga 104896
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 cgtagtcggccatgtcgaccatca 239 |||||| ||||||||||||||||| Sbjct: 3121354 cgtagtgggccatgtcgaccatca 3121377
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 cgtagtcggccatgtcgaccatca 239 |||||| ||||||||||||||||| Sbjct: 811765 cgtagtgggccatgtcgaccatca 811742
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 cgtagtcggccatgtcgaccatca 239 |||||| ||||||||||||||||| Sbjct: 2666685 cgtagtgggccatgtcgaccatca 2666708
>gb|AC122402.2| Mus musculus BAC clone RP24-108B4 from chromosome 13, complete sequence Length = 175669 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 ttcacatctggatctgatagcaga 92 ||||||||||||||||| |||||| Sbjct: 172580 ttcacatctggatctgaaagcaga 172557
>gb|AF496108.1| Lactobacillus delbrueckii subsp. lactis 50s ribosomal protein L19 gene, partial cds Length = 318 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 acgacgtacgcggccgtgac 336 |||||||||||||||||||| Sbjct: 143 acgacgtacgcggccgtgac 124
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 cggcctcggcgctcccgtgcccgc 407 ||||||||||||| |||||||||| Sbjct: 2520468 cggcctcggcgctgccgtgcccgc 2520445
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 470 ccgccctggccgagctccggcgtcatcg 497 |||||||||||||||||| || |||||| Sbjct: 1182778 ccgccctggccgagctcccgcttcatcg 1182751
>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24 Length = 303250 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 cgtagtcggccatgtcgaccatca 239 |||||| ||||||||||||||||| Sbjct: 230174 cgtagtgggccatgtcgaccatca 230151
>gb|AC124657.5| Homo sapiens chromosome 11, clone RP11-624D11, complete sequence Length = 155985 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 aaaaggaaacaaatcttaaagagc 27 ||||||||||||||| |||||||| Sbjct: 132165 aaaaggaaacaaatcataaagagc 132142
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 459 gcgccgcgcagccgccctggccga 482 ||||||||| |||||||||||||| Sbjct: 3551880 gcgccgcgccgccgccctggccga 3551857
>gb|AF124817.1|AF124817 Mentha x piperita cytochrome p450 isoform PM2 mRNA, complete cds Length = 1497 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 cgccacctccgctcctcggc 369 |||||||||||||||||||| Sbjct: 481 cgccacctccgctcctcggc 500
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 acaaatcttaaagagctttcatcc 35 ||||||||||||||| |||||||| Sbjct: 22669535 acaaatcttaaagagatttcatcc 22669512
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 ggcgctcccgtgcccgccgg 410 |||||||||||||||||||| Sbjct: 8012988 ggcgctcccgtgcccgccgg 8012969
>gb|AE004655.1| Pseudomonas aeruginosa PAO1, section 216 of 529 of the complete genome Length = 10829 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 cggcggcgaaggccacgccg 427 |||||||||||||||||||| Sbjct: 5809 cggcggcgaaggccacgccg 5828
>emb|BX682231.5| Mouse DNA sequence from clone RP24-369N16 on chromosome 2, complete sequence Length = 48121 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tttcacatctggatctgata 87 |||||||||||||||||||| Sbjct: 8122 tttcacatctggatctgata 8141
>dbj|AP003932.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1773_H01 Length = 146543 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 acaaatcttaaagagctttcatcc 35 ||||||||||||||| |||||||| Sbjct: 87433 acaaatcttaaagagatttcatcc 87410
>emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Multi-Drug Resistance in Acinetobacter baumannii Length = 100001 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gcatcaaatcgatttgattg 140 |||||||||||||||||||| Sbjct: 18406 gcatcaaatcgatttgattg 18387
>emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chromosome 2, complete sequence Length = 176808 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aattatttcacatctggatc 82 |||||||||||||||||||| Sbjct: 53661 aattatttcacatctggatc 53642 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,977,559 Number of Sequences: 3902068 Number of extensions: 3977559 Number of successful extensions: 88754 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87197 Number of HSP's gapped (non-prelim): 1557 length of query: 508 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 486 effective length of database: 17,147,199,772 effective search space: 8333539089192 effective search space used: 8333539089192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
