ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart10b06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 167 bits (84), Expect = 3e-38 Identities = 144/164 (87%) Strand = Plus / Minus Query: 191 tctactggaccatttcttctctctactctaccatcccgcgctgcttgaaaatttcaaaca 250 ||||||| ||||||| |||| ||| |||| ||| ||||| |||||||||||||| |||| Sbjct: 23312031 tctactgtaccatttgctctccctattctaacattccgcgttgcttgaaaatttcgaaca 23311972 Query: 251 tgggcgaaccaatcttagctggtgactcgacaacagttaccccagcctccctgagtgcct 310 | | ||||||||||| ||||||||||| |||||||| ||||||||||| ||||| |||| Sbjct: 23311971 tagttgaaccaatcttcgctggtgactcaacaacagtaaccccagcctctctgagagcct 23311912 Query: 311 tgatcttgtcttgggcagtacccttgccccctgacacaattgct 354 |||| |||||||| || ||||||||||||||||||||||||||| Sbjct: 23311911 tgattttgtcttgtgccgtacccttgccccctgacacaattgct 23311868
>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1065_B06 Length = 113170 Score = 167 bits (84), Expect = 3e-38 Identities = 144/164 (87%) Strand = Plus / Minus Query: 191 tctactggaccatttcttctctctactctaccatcccgcgctgcttgaaaatttcaaaca 250 ||||||| ||||||| |||| ||| |||| ||| ||||| |||||||||||||| |||| Sbjct: 67289 tctactgtaccatttgctctccctattctaacattccgcgttgcttgaaaatttcgaaca 67230 Query: 251 tgggcgaaccaatcttagctggtgactcgacaacagttaccccagcctccctgagtgcct 310 | | ||||||||||| ||||||||||| |||||||| ||||||||||| ||||| |||| Sbjct: 67229 tagttgaaccaatcttcgctggtgactcaacaacagtaaccccagcctctctgagagcct 67170 Query: 311 tgatcttgtcttgggcagtacccttgccccctgacacaattgct 354 |||| |||||||| || ||||||||||||||||||||||||||| Sbjct: 67169 tgattttgtcttgtgccgtacccttgccccctgacacaattgct 67126
>ref|XM_478842.1| Oryza sativa (japonica cultivar-group), mRNA Length = 996 Score = 163 bits (82), Expect = 5e-37 Identities = 130/146 (89%) Strand = Plus / Minus Query: 217 tctaccatcccgcgctgcttgaaaatttcaaacatgggcgaaccaatcttagctggtgac 276 |||| ||| ||||| |||||||||||||| ||||| | ||||||||||| ||||||||| Sbjct: 992 tctaacattccgcgttgcttgaaaatttcgaacatagttgaaccaatcttcgctggtgac 933 Query: 277 tcgacaacagttaccccagcctccctgagtgccttgatcttgtcttgggcagtacccttg 336 || |||||||| ||||||||||| ||||| |||||||| |||||||| || ||||||||| Sbjct: 932 tcaacaacagtaaccccagcctctctgagagccttgattttgtcttgtgccgtacccttg 873 Query: 337 ccccctgacacaattgctccggcatg 362 |||||||||||||||||||| ||||| Sbjct: 872 ccccctgacacaattgctccagcatg 847
>gb|AY104319.1| Zea mays PCO131533 mRNA sequence Length = 1619 Score = 125 bits (63), Expect = 1e-25 Identities = 129/151 (85%) Strand = Plus / Minus Query: 212 tctactctaccatcccgcgctgcttgaaaatttcaaacatgggcgaaccaatcttagctg 271 |||| |||||||| || ||||||||||| ||||||||||||| || |||||||| || | Sbjct: 1152 tctattctaccattccacgctgcttgaagatttcaaacatggtagagccaatcttcgccg 1093 Query: 272 gtgactcgacaacagttaccccagcctccctgagtgccttgatcttgtcttgggcagtac 331 ||||||||||||| || || || ||||| |||||||||||||| ||||| |||||||||| Sbjct: 1092 gtgactcgacaacggtaacacctgcctctctgagtgccttgattttgtcctgggcagtac 1033 Query: 332 ccttgccccctgacacaattgctccggcatg 362 |||| || |||| ||| || ||||| ||||| Sbjct: 1032 cctttcctcctgccacgatagctccagcatg 1002
>gb|AC157350.29| Medicago truncatula clone mth2-143n6, complete sequence Length = 131960 Score = 87.7 bits (44), Expect = 2e-14 Identities = 101/120 (84%) Strand = Plus / Plus Query: 231 ctgcttgaaaatttcaaacatgggcgaaccaatcttagctggtgactcgacaacagttac 290 ||||||||||||||||||||||| | ||||| |||||||| ||||| ||||| || || Sbjct: 52027 ctgcttgaaaatttcaaacatggcagctccaattttagctggggactccacaactgtcac 52086 Query: 291 cccagcctccctgagtgccttgatcttgtcttgggcagtacccttgccccctgacacaat 350 ||||| |||||||| | |||| |||||||| |||||||||||||| || |||||||| Sbjct: 52087 tccagcttccctgagggtgctgattttgtcttgagcagtacccttgccacccgacacaat 52146
>gb|DQ235193.1| Solanum tuberosum clone 167F09 succinyl-CoA ligase alpha 1 subunit-like mRNA, complete cds Length = 1389 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 304 agtgccttgatcttgtcttgggcagtacccttgccccctgacacaattgctccggcatg 362 ||||||||||| ||||||||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct: 990 agtgccttgattttgtcttgggctgttccctttccccccgatacaatagctccagcatg 932
>ref|NM_122231.2| Arabidopsis thaliana catalytic/ succinate-CoA ligase (GDP-forming) AT5G23250 mRNA, complete cds Length = 1449 Score = 46.1 bits (23), Expect = 0.078 Identities = 32/35 (91%) Strand = Plus / Minus Query: 244 tcaaacatgggcgaaccaatcttagctggtgactc 278 |||||||| | || ||||||||||||||||||||| Sbjct: 1066 tcaaacatcgccgcaccaatcttagctggtgactc 1032
>gb|AY114607.1| Arabidopsis thaliana succinyl-CoA synthetase alpha subunit (At5g23250) mRNA, complete cds Length = 1119 Score = 46.1 bits (23), Expect = 0.078 Identities = 32/35 (91%) Strand = Plus / Minus Query: 244 tcaaacatgggcgaaccaatcttagctggtgactc 278 |||||||| | || ||||||||||||||||||||| Sbjct: 995 tcaaacatcgccgcaccaatcttagctggtgactc 961
>gb|AY092994.1| Arabidopsis thaliana succinyl-CoA synthetase, alpha subunit (At5g23250) mRNA, complete cds Length = 1234 Score = 46.1 bits (23), Expect = 0.078 Identities = 32/35 (91%) Strand = Plus / Minus Query: 244 tcaaacatgggcgaaccaatcttagctggtgactc 278 |||||||| | || ||||||||||||||||||||| Sbjct: 1006 tcaaacatcgccgcaccaatcttagctggtgactc 972
>emb|BX830319.1|CNS09ZZW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB73ZB09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1350 Score = 46.1 bits (23), Expect = 0.078 Identities = 32/35 (91%) Strand = Plus / Minus Query: 244 tcaaacatgggcgaaccaatcttagctggtgactc 278 |||||||| | || ||||||||||||||||||||| Sbjct: 1056 tcaaacatcgccgcaccaatcttagctggtgactc 1022
>gb|AY087899.1| Arabidopsis thaliana clone 39462 mRNA, complete sequence Length = 1345 Score = 46.1 bits (23), Expect = 0.078 Identities = 32/35 (91%) Strand = Plus / Minus Query: 244 tcaaacatgggcgaaccaatcttagctggtgactc 278 |||||||| | || ||||||||||||||||||||| Sbjct: 1066 tcaaacatcgccgcaccaatcttagctggtgactc 1032
>dbj|AB007648.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15 Length = 76329 Score = 46.1 bits (23), Expect = 0.078 Identities = 32/35 (91%) Strand = Plus / Minus Query: 244 tcaaacatgggcgaaccaatcttagctggtgactc 278 |||||||| | || ||||||||||||||||||||| Sbjct: 43589 tcaaacatcgccgcaccaatcttagctggtgactc 43555
>gb|AY167586.1| Lycopersicon esculentum succinyl-CoA ligase alpha 1 subunit (SCOA) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1164 Score = 46.1 bits (23), Expect = 0.078 Identities = 50/59 (84%) Strand = Plus / Minus Query: 304 agtgccttgatcttgtcttgggcagtacccttgccccctgacacaattgctccggcatg 362 ||||||||||| ||||||||||| || || || ||||| || ||||| ||||| ||||| Sbjct: 975 agtgccttgattttgtcttgggctgttccttttccccccgatacaatagctccagcatg 917
>gb|AC115967.11| Mus musculus chromosome 8, clone RP24-72G22, complete sequence Length = 221435 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 ggaaaggaaaaggaaaaaggga 90 |||||||||||||||||||||| Sbjct: 64592 ggaaaggaaaaggaaaaaggga 64571
>gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete sequence Length = 196835 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Minus Query: 61 taagacagggaaaggaaaaggaaaaaggga 90 |||||||||||||||||||| |||| |||| Sbjct: 64055 taagacagggaaaggaaaagaaaaatggga 64026
>gb|AC121601.4| Mus musculus BAC clone RP23-305F2 from 1, complete sequence Length = 190653 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaagg 88 |||||||||||||||||||||| Sbjct: 147998 agggaaaggaaaaggaaaaagg 148019
>gb|AC112273.4| Mus musculus BAC clone RP24-122H5 from 3, complete sequence Length = 180155 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaagg 88 |||||||||||||||||||||| Sbjct: 145027 agggaaaggaaaaggaaaaagg 145048
>emb|AL833772.8| Mouse DNA sequence from clone RP23-154K13 on chromosome 11 Contains the 3' end of the Vps54 gene for vacuolar protein sorting 54 (yeast), an H+ transporting mitochondrial ATP synthase F0 complex subunit g (Atp5l) pseudogene and the 3' end of the Ugp2 gene for UDP-glucose pyrophosphorylase 2, complete sequence Length = 54149 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 67 agggaaaggaaaaggaaaaagg 88 |||||||||||||||||||||| Sbjct: 49101 agggaaaggaaaaggaaaaagg 49080
>emb|AL731562.10| Mouse DNA sequence from clone RP23-49B3 on chromosome 13, complete sequence Length = 81954 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 67 agggaaaggaaaaggaaaaagg 88 |||||||||||||||||||||| Sbjct: 5998 agggaaaggaaaaggaaaaagg 5977
>gb|AC109461.3| Homo sapiens chromosome 5 clone RP11-269G2, complete sequence Length = 89234 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 290 ccccagcctccctgagtgcctt 311 |||||||||||||||||||||| Sbjct: 48023 ccccagcctccctgagtgcctt 48002
>gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromosome unknown, complete sequence Length = 240827 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 ggaaaggaaaaggaaaaaggga 90 |||||||||||||||||||||| Sbjct: 102734 ggaaaggaaaaggaaaaaggga 102755
>gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, complete sequence Length = 183378 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 ggaaaggaaaaggaaaaaggga 90 |||||||||||||||||||||| Sbjct: 48829 ggaaaggaaaaggaaaaaggga 48808
>gb|AC034216.5| Homo sapiens chromosome 5 clone CTD-2004C12, complete sequence Length = 178405 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 ggaaaggaaaaggaaaaaggga 90 |||||||||||||||||||||| Sbjct: 112040 ggaaaggaaaaggaaaaaggga 112019
>emb|AJ243856.1|MMU243856 Mus musculus Lhx9 gene for putative LIM homeodomain protein, exon 5 Length = 898 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 68 gggaaaggaaaaggaaaaaggg 89 |||||||||||||||||||||| Sbjct: 123 gggaaaggaaaaggaaaaaggg 144
>gb|AC162280.4| Mus musculus chromosome 3, clone RP24-240C19, complete sequence Length = 165299 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaagg 88 |||||||||||||||||||||| Sbjct: 37254 agggaaaggaaaaggaaaaagg 37275
>gb|M38776.1|PFAMBNCB P.knowlesi Mbn-cutting sites in lambda KBS50 Length = 2824 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaagg 88 |||||||||||||||||||||| Sbjct: 2650 agggaaaggaaaaggaaaaagg 2671
>ref|NM_104276.1| Arabidopsis thaliana carboxylic ester hydrolase/ hydrolase, acting on ester bonds / lipase AT1G53990 mRNA, complete cds Length = 1104 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 162 acaaaaagaagtttcccgatgtttt 186 |||| |||||||||||||||||||| Sbjct: 737 acaacaagaagtttcccgatgtttt 761
>gb|AC107734.13| Mus musculus chromosome 7, clone RP23-399E4, complete sequence Length = 198485 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 gggaaaggaaaaggaaaaagg 88 ||||||||||||||||||||| Sbjct: 45771 gggaaaggaaaaggaaaaagg 45751
>gb|AC120180.19| Mus musculus chromosome 1, clone RP24-499I2, complete sequence Length = 183516 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 62 aagacagggaaaggaaaaggaaaaa 86 |||| |||||||||||||||||||| Sbjct: 32764 aagaaagggaaaggaaaaggaaaaa 32740
>gb|AC121827.3| Mus musculus BAC clone RP23-476B3 from chromosome 7, complete sequence Length = 183470 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 78613 tttcttttgtactggaccatttctt 78589
>gb|AC130719.3| Mus musculus BAC clone RP24-107M5 from chromosome 7, complete sequence Length = 143584 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 96670 tttcttttgtactggaccatttctt 96694
>gb|AC142453.3| Mus musculus BAC clone RP23-398A2 from chromosome 7, complete sequence Length = 188249 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 108435 tttcttttgtactggaccatttctt 108459
>gb|AC136023.5| Mus musculus BAC clone RP24-501J4 from chromosome 7, complete sequence Length = 138729 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 61192 tttcttttgtactggaccatttctt 61216
>gb|AC127324.4| Mus musculus BAC clone RP23-244I2 from chromosome 7, complete sequence Length = 176387 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 43992 tttcttttgtactggaccatttctt 43968
>gb|AC122796.3| Mus musculus BAC clone RP24-347J6 from chromosome 7, complete sequence Length = 166768 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 104397 tttcttttgtactggaccatttctt 104373
>gb|AC126273.3| Mus musculus BAC clone RP23-99P15 from 7, complete sequence Length = 182698 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 159326 tttcttttgtactggaccatttctt 159302
>gb|AC124545.4| Mus musculus BAC clone RP23-272D9 from 7, complete sequence Length = 169442 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 15518 tttcttttgtactggaccatttctt 15494
>gb|AC157595.4| Mus musculus BAC clone RP23-238F18 from chromosome 7, complete sequence Length = 196922 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 94360 tttcttttgtactggaccatttctt 94384
>gb|AC100835.2| Homo sapiens chromosome 15, clone CTD-3154N5, complete sequence Length = 165036 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 gggaaaggaaaaggaaaaagg 88 ||||||||||||||||||||| Sbjct: 59615 gggaaaggaaaaggaaaaagg 59595
>gb|AC098566.3| Oryza sativa chromosome 10 clone OSJNBa0051J07, complete sequence Length = 148301 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaagggac 91 ||||||||||||||||||||| Sbjct: 62845 aaaggaaaaggaaaaagggac 62865
>gb|AC156566.3| Mus musculus BAC clone RP23-337B16 from chromosome 7, complete sequence Length = 198071 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 110905 tttcttttgtactggaccatttctt 110881
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaagggac 91 ||||||||||||||||||||| Sbjct: 10913599 aaaggaaaaggaaaaagggac 10913619 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 aaaggaaaaggaaaaagggac 91 ||||||||||||||||||||| Sbjct: 9917961 aaaggaaaaggaaaaagggac 9917941
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaagggac 91 ||||||||||||||||||||| Sbjct: 4915924 aaaggaaaaggaaaaagggac 4915944 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 3190765 aaaggaaaaggaaaaaggga 3190784
>gb|AC018462.4| Homo sapiens BAC clone RP11-270B14 from 2, complete sequence Length = 189326 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaag 87 ||||||||||||||||||||| Sbjct: 88881 agggaaaggaaaaggaaaaag 88901
>emb|BX539312.7| Mouse DNA sequence from clone RP24-164C21 on chromosome 7, complete sequence Length = 123224 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 48706 tttcttttgtactggaccatttctt 48730
>gb|AC006577.2|F15I1 Sequence of BAC F15I1 from Arabidopsis thaliana chromosome 1, complete sequence Length = 89035 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 162 acaaaaagaagtttcccgatgtttt 186 |||| |||||||||||||||||||| Sbjct: 12630 acaacaagaagtttcccgatgtttt 12654
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaagggac 91 ||||||||||||||||||||| Sbjct: 4916711 aaaggaaaaggaaaaagggac 4916731 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 3190686 aaaggaaaaggaaaaaggga 3190705
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaagggac 91 ||||||||||||||||||||| Sbjct: 10913298 aaaggaaaaggaaaaagggac 10913318 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 aaaggaaaaggaaaaagggac 91 ||||||||||||||||||||| Sbjct: 9917846 aaaggaaaaggaaaaagggac 9917826
>gb|AC172890.2| Mus musculus BAC clone RP24-337A4 from chromosome 7, complete sequence Length = 182879 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 143283 tttcttttgtactggaccatttctt 143259
>emb|AL954152.5|CNS08CCQ Oryza sativa chromosome 12, . BAC OSJNBb0034E16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124204 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaagggac 91 ||||||||||||||||||||| Sbjct: 62662 aaaggaaaaggaaaaagggac 62682
>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140806 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaagggac 91 ||||||||||||||||||||| Sbjct: 14509 aaaggaaaaggaaaaagggac 14529
>gb|AC127238.5| Mus musculus BAC clone RP24-378P20 from 7, complete sequence Length = 224224 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 202743 tttcttttgtactggaccatttctt 202719
>gb|AC150684.2| Mus musculus BAC clone RP23-268G6 from 7, complete sequence Length = 193525 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 184584 tttcttttgtactggaccatttctt 184560 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 23514 tttcttttgtactggaccatttctt 23490
>gb|AC173484.2| Mus musculus BAC clone RP23-250N1 from chromosome 7, complete sequence Length = 207692 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 83360 tttcttttgtactggaccatttctt 83336
>gb|AC173478.1| Mus musculus BAC clone RP24-81N9 from chromosome 7, complete sequence Length = 208133 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 132579 tttcttttgtactggaccatttctt 132555
>gb|AC172366.1| Mus musculus BAC clone RP24-499J10 from chromosome 7, complete sequence Length = 171297 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 tttcttttctactggaccatttctt 208 |||||||| |||||||||||||||| Sbjct: 146901 tttcttttgtactggaccatttctt 146925
>gb|AC122357.4| Mus musculus BAC clone RP23-403O8 from chromosome 13, complete sequence Length = 203039 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 112337 ggaaaggaaaaggaaaaagg 112356
>gb|AC159290.2| Mus musculus BAC clone RP23-291I2 from chromosome 13, complete sequence Length = 231853 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 2146 ggaaaggaaaaggaaaaagg 2165
>gb|AC159438.1| Trypanosoma brucei chromosome 8 clone RPCI93-29O4, complete sequence Length = 138187 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaa 86 |||||||||||||||||||| Sbjct: 30154 agggaaaggaaaaggaaaaa 30173
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaa 86 |||||||||||||||||||| Sbjct: 347607 agggaaaggaaaaggaaaaa 347626
>gb|AC115060.9| Mus musculus chromosome 1, clone RP24-395F2, complete sequence Length = 172482 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 gggaaaggaaaaggaaaaag 87 |||||||||||||||||||| Sbjct: 67199 gggaaaggaaaaggaaaaag 67180
>gb|AC131966.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0028C16, complete sequence Length = 151030 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 53640 aaaggaaaaggaaaaaggga 53659
>gb|AC116452.9| Mus musculus chromosome 1, clone RP24-287C2, complete sequence Length = 171792 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gggaaaggaaaaggaaaaag 87 |||||||||||||||||||| Sbjct: 66359 gggaaaggaaaaggaaaaag 66378 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 19060 aaaggaaaaggaaaaaggga 19079
>ref|XM_957878.1| Neurospora crassa OR74A hypothetical protein (NCU07591.1) partial mRNA Length = 2832 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 2451 aaaggaaaaggaaaaaggga 2470
>ref|XM_328296.1| Neurospora crassa OR74A hypothetical protein (NCU07591.1) partial mRNA Length = 2832 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 2451 aaaggaaaaggaaaaaggga 2470
>gb|AC161509.8| Mus musculus chromosome 7, clone RP23-53O17, complete sequence Length = 196638 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tttctactggaccatttcttctct 212 |||||||||| ||||||||||||| Sbjct: 26574 tttctactggcccatttcttctct 26551
>gb|AC147555.2| Mus musculus BAC clone RP23-478E6 from chromosome 5, complete sequence Length = 176491 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaaggga 90 ||||||||||||||| |||||||| Sbjct: 155691 agggaaaggaaaagggaaaaggga 155714
>gb|AC138737.10| Mus musculus chromosome 5, clone RP23-307F20, complete sequence Length = 216064 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 agggaaaggaaaaggaaaaa 86 |||||||||||||||||||| Sbjct: 144713 agggaaaggaaaaggaaaaa 144694
>gb|AC165946.4| Mus musculus chromosome 1, clone RP24-167M10, complete sequence Length = 157434 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gggaaaggaaaaggaaaaag 87 |||||||||||||||||||| Sbjct: 117713 gggaaaggaaaaggaaaaag 117732
>gb|AC161345.4| Mus musculus chromosome 5, clone RP23-189N6, complete sequence Length = 177864 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 60634 aaaggaaaaggaaaaaggga 60615
>gb|AC159715.5| Mus musculus 6 BAC RP23-367A13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209869 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 184475 ggaaaggaaaaggaaaaagg 184456
>gb|AC068663.5| Mus musculus strain C57BL6/J chromosome 5 clone RP23-280D18, complete sequence Length = 221134 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 57478 aaaggaaaaggaaaaaggga 57459 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 57413 aaaggaaaaggaaaaaggga 57394
>ref|XM_534611.2| PREDICTED: Canis familiaris similar to IQ motif containing with AAA domain (LOC477415), mRNA Length = 3740 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 3216 aaaggaaaaggaaaaaggga 3235
>emb|CT009577.5| Mouse DNA sequence from clone RP23-24C24 on chromosome 16, complete sequence Length = 258862 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaaggga 90 ||||||||||||||||||| |||| Sbjct: 159949 agggaaaggaaaaggaaaagggga 159972
>emb|Z66567.1|CEZK455 Caenorhabditis elegans Cosmid ZK455, complete sequence Length = 33904 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 9072 aaaggaaaaggaaaaaggga 9091
>gb|AC124563.4| Mus musculus BAC clone RP23-206B15 from chromosome 6, complete sequence Length = 210092 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 gggaaaggaaaaggaaaaag 87 |||||||||||||||||||| Sbjct: 113637 gggaaaggaaaaggaaaaag 113618
>gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome 16, complete sequence Length = 202652 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 cagggaaaggaaaaggaaaa 85 |||||||||||||||||||| Sbjct: 103274 cagggaaaggaaaaggaaaa 103293
>gb|AC025448.6| Homo sapiens chromosome 5 clone CTD-2113L7, complete sequence Length = 164190 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 21811 aaaggaaaaggaaaaaggga 21792
>gb|AC126438.3| Mus musculus BAC clone RP24-255G1 from chromosome 17, complete sequence Length = 152802 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaaggga 90 ||||||||||||||| |||||||| Sbjct: 137571 agggaaaggaaaagggaaaaggga 137594
>gb|AC129015.4| Mus musculus BAC clone RP24-364A8 from chromosome 5, complete sequence Length = 165259 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 agggaaaggaaaaggaaaaaggga 90 ||||||||||||||| |||||||| Sbjct: 128248 agggaaaggaaaagggaaaaggga 128225
>gb|AC124185.3| Mus musculus BAC clone RP23-230F5 from 1, complete sequence Length = 195372 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 80743 aaaggaaaaggaaaaaggga 80724 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 gggaaaggaaaaggaaaaag 87 |||||||||||||||||||| Sbjct: 33443 gggaaaggaaaaggaaaaag 33424
>ref|XM_546508.2| PREDICTED: Canis familiaris beta-site APP-cleaving enzyme 1 (BACE1), mRNA Length = 2445 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ttcccgatgttttcttttct 193 |||||||||||||||||||| Sbjct: 2020 ttcccgatgttttcttttct 2039
>gb|AC113541.10| Mus musculus chromosome 5, clone RP23-185N2, complete sequence Length = 210222 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 139656 aaaggaaaaggaaaaaggga 139675 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 139591 aaaggaaaaggaaaaaggga 139610
>gb|AC111092.10| Mus musculus chromosome 12, clone RP23-168O9, complete sequence Length = 211926 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccatttcttctctctactct 219 |||||||||||||||||||| Sbjct: 180392 ccatttcttctctctactct 180373
>ref|XM_675277.1| Plasmodium berghei strain ANKA hypothetical protein (PB000153.01.0) partial mRNA Length = 1056 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 175 aaaggaaaaggaaaaaggga 194
>gb|AC120736.4| Rattus norvegicus 11 BAC CH230-252B13 (Children's Hospital Oakland Research Institute) complete sequence Length = 82009 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 cagggaaaggaaaaggaaaa 85 |||||||||||||||||||| Sbjct: 27732 cagggaaaggaaaaggaaaa 27751
>gb|AC107781.9| Mus musculus, clone RP23-56O1, complete sequence Length = 174437 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 agggaaaggaaaaggaaaaa 86 |||||||||||||||||||| Sbjct: 79691 agggaaaggaaaaggaaaaa 79672
>emb|CR788268.5| Human DNA sequence from clone RP11-24B13 on chromosome 9 Contains the 3' end of the gene for a novel protein similar to contactin associated protein-like 3 (CNTNAP3) and an RNA binding motif protein 17 (RBM17) pseudogene, complete sequence Length = 164026 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gaaaaggaaaaagggactga 94 |||||||||||||||||||| Sbjct: 112709 gaaaaggaaaaagggactga 112728
>emb|BX005040.12| Human DNA sequence from clone RP11-101E5 on chromosome 9 Contains two novel genes, a novel protein similar to chromosome 9 open reading frame 36 (C9orf36), a 6-pyruvoyltetrahydropterin synthase (PTS) pseudogene, the 5' end of a pseudogene similar to part of contactin associated protein-like family, a novel pseudogene and a CpG island, complete sequence Length = 171762 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gaaaaggaaaaagggactga 94 |||||||||||||||||||| Sbjct: 169148 gaaaaggaaaaagggactga 169167
>emb|BX005195.5| Human DNA sequence from clone RP11-203I2 on chromosome 9 Contains the 3' end of a pseudogene similar to part of contactin associated protein-like family and a pseudogene similar to part of a vomeronasal receptor, complete sequence Length = 174843 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gaaaaggaaaaagggactga 94 |||||||||||||||||||| Sbjct: 52753 gaaaaggaaaaagggactga 52772
>emb|AL592525.10| Human DNA sequence from clone RP11-111G23 on chromosome 9 Contains a pseudogene similar to part of contactin associated protein-like 3 (CNTNAP3) and a pseudogene similar to part of vomeronasal 2 family, complete sequence Length = 142805 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gaaaaggaaaaagggactga 94 |||||||||||||||||||| Sbjct: 29278 gaaaaggaaaaagggactga 29297
>emb|AL512643.9| Human DNA sequence from clone RP11-265B7 on chromosome 9 Contains the 5' end of a novel gene (FLJ25416), the 3' end of a novel gene and a novel gene, complete sequence Length = 116806 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 agggaaaggaaaaggaaaaaggga 90 |||||||||||||| ||||||||| Sbjct: 65395 agggaaaggaaaagaaaaaaggga 65372
>emb|AL354802.15| Human DNA sequence from clone RP11-54O10 on chromosome 13 Contains part of the TRPC4 gene transient receptor potential cation channel, subfamily C, member 4, complete sequence Length = 171184 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaa 86 |||||||||||||||||||| Sbjct: 8578 agggaaaggaaaaggaaaaa 8597
>emb|AL353729.17| Human DNA sequence from clone RP11-290L7 on chromosome 9 Contains the 3' end of the CNTNAP3 gene for contactin associated protein-like 3, a TGF beta-inducible nuclear protein 1 (TINP1) pseudogene and a RNA binding motif protein 17 (RBM17) pseudogene, complete sequence Length = 195668 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gaaaaggaaaaagggactga 94 |||||||||||||||||||| Sbjct: 88672 gaaaaggaaaaagggactga 88691
>emb|AL158205.12| Human DNA sequence from clone RP11-177F4 on chromosome 9 Contains a CpG island, complete sequence Length = 68171 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 10854 ggaaaggaaaaggaaaaagg 10873
>emb|AL161722.9| Human DNA sequence from clone RP11-497J7 on chromosome X Contains a melanoma antigen family B 4 pseudogene and a nuclear transcription factor Y, gamma (NFYC) pseudogene, complete sequence Length = 154594 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 61509 aaaggaaaaggaaaaaggga 61528
>gb|AC155332.10| Mus musculus 6 BAC RP24-140J8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 202181 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 101482 ggaaaggaaaaggaaaaagg 101463
>emb|AL645784.20| Mouse DNA sequence from clone RP23-11C7 on chromosome 11 Contains a zinc finger protein pseudogene, a chaperonin subunit 7 (eta) (Cct7) pseudogene, a novel pseudogene and a CpG island, complete sequence Length = 217352 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 191873 ggaaaggaaaaggaaaaagg 191854
>emb|AL844147.9| Mouse DNA sequence from clone RP23-145N4 on chromosome 11 Contains a novel gene, the 3' end of the Acyp2 gene for muscle type acylphosphatase 2 and a proteasome (prosome, macropain) non-ATPase 26S subunit14 (Psmd14) pseudogene, complete sequence Length = 228444 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 acagggaaaggaaaaggaaaaagg 88 |||||||||| ||||||||||||| Sbjct: 207016 acagggaaagaaaaaggaaaaagg 206993
>emb|AL645747.11| Mouse DNA sequence from clone RP23-436D9 on chromosome 11 Contains a novel gene and a signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (Stam) pseudogene, complete sequence Length = 172052 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 135124 aaaggaaaaggaaaaaggga 135143
>emb|AL683843.9| Mouse DNA sequence from clone RP23-217E1 on chromosome 11 Contains part of the Ranbp17 gene for RAN binding protein 17, an acidic (leucine-rich) nuclear phosphoprotein 32 family, member E (Anp32e) pseudogene and a high mobility group box 1 (Hmgb1) pseudogene, complete sequence Length = 198926 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 166016 aaaggaaaaggaaaaaggga 166035
>emb|AL671560.7| Mouse DNA sequence from clone RP23-149A5 on chromosome 1 Contains the 3' end of the Nrp2 gene for neuropilin 2, complete sequence Length = 157987 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 49163 ggaaaggaaaaggaaaaagg 49182
>emb|AL592080.26| Mouse DNA sequence from clone RP23-102H10 on chromosome 11 Contains a endothelial differentiation-related factor 1 (Edf1) pseudogene, the 3' end of the gene for a novel protein similar to human sperm antigen HCMOGT-1 (B230396K10Rik) and a CpG island, complete sequence Length = 216023 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 97214 aaaggaaaaggaaaaaggga 97195
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 gagtagctcagctcagcggccagc 116 ||||||||||| |||||||||||| Sbjct: 5650055 gagtagctcaggtcagcggccagc 5650032
>gb|AC156617.8| Mus musculus chromosome 7, clone RP23-311N3, complete sequence Length = 203647 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gggaaaggaaaaggaaaaag 87 |||||||||||||||||||| Sbjct: 175466 gggaaaggaaaaggaaaaag 175485
>emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, complete sequence Length = 211060 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ttgaacatttgaaatgagca 37 |||||||||||||||||||| Sbjct: 89711 ttgaacatttgaaatgagca 89730
>emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chromosome X, complete sequence Length = 176577 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 aagacagggaaaggaaaaggaaaa 85 |||| ||||||||||||||||||| Sbjct: 117437 aagaaagggaaaggaaaaggaaaa 117460
>gb|AC010030.10| Drosophila melanogaster 3L BAC RP98-2C14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 200859 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 tgggggcactaccgacgtattgct 142 ||||||||||||| |||||||||| Sbjct: 81148 tgggggcactaccaacgtattgct 81171
>gb|AC091133.11| Homo sapiens chromosome 17, clone RP11-501C14, complete sequence Length = 168613 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gaaaggaaaaggaaaaaggg 89 |||||||||||||||||||| Sbjct: 94485 gaaaggaaaaggaaaaaggg 94466
>gb|AC108877.2| Drosophila melanogaster 3L BAC RP98-17L24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163709 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cgctattaaccaacgagcaa 162 |||||||||||||||||||| Sbjct: 12851 cgctattaaccaacgagcaa 12870
>ref|NM_019973.1| Mus musculus Son cell proliferation protein (Son), transcript variant 2, mRNA Length = 6549 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 cagggaaaggaaaaggaaaa 85 |||||||||||||||||||| Sbjct: 5686 cagggaaaggaaaaggaaaa 5705
>gb|AC023751.3| Drosophila melanogaster 3L BAC RP98-31C17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187437 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cgctattaaccaacgagcaa 162 |||||||||||||||||||| Sbjct: 96670 cgctattaaccaacgagcaa 96689
>ref|NM_178880.3| Mus musculus Son cell proliferation protein (Son), transcript variant 1, mRNA Length = 8272 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 cagggaaaggaaaaggaaaa 85 |||||||||||||||||||| Sbjct: 5686 cagggaaaggaaaaggaaaa 5705
>gb|AC092713.2| Homo sapiens chromosome 17, clone CTC-780D20, complete sequence Length = 142087 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 catttcttctctctactcta 220 |||||||||||||||||||| Sbjct: 71022 catttcttctctctactcta 71041
>ref|NM_168102.1| Drosophila melanogaster Guanine nucleotide exchange factor GEF64C CG32239-RA (Gef64C), mRNA Length = 7283 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cgctattaaccaacgagcaa 162 |||||||||||||||||||| Sbjct: 7073 cgctattaaccaacgagcaa 7092
>gb|AY064174.1| Drosophila melanogaster rho GTPase guanine nucleotide exchange factor GEF64C (Gef64c) mRNA, complete cds Length = 7304 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cgctattaaccaacgagcaa 162 |||||||||||||||||||| Sbjct: 7081 cgctattaaccaacgagcaa 7100
>gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, complete sequence Length = 166757 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 160397 aaaggaaaaggaaaaaggga 160416
>gb|AY060795.1| Drosophila melanogaster GH26207 full length cDNA Length = 2479 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cgctattaaccaacgagcaa 162 |||||||||||||||||||| Sbjct: 2252 cgctattaaccaacgagcaa 2271
>gb|AC109319.17| Homo sapiens chromosome 17, clone RP11-899O23, complete sequence Length = 99701 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 aagacagggaaaggaaaaggaaaa 85 |||| ||||||||||||||||||| Sbjct: 61263 aagagagggaaaggaaaaggaaaa 61286
>dbj|AK040621.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430110D10 product:Son cell proliferation protein, full insert sequence Length = 2279 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 cagggaaaggaaaaggaaaa 85 |||||||||||||||||||| Sbjct: 865 cagggaaaggaaaaggaaaa 884
>gb|AC154736.2| Mus musculus BAC clone RP24-389J14 from chromosome 16, complete sequence Length = 141092 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaaggga 90 ||||||||||||||||||| |||| Sbjct: 82866 agggaaaggaaaaggaaaagggga 82889
>gb|AC026955.10|AC026955 Homo sapiens chromosome 17, clone RP11-585D22, complete sequence Length = 176258 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 catttcttctctctactcta 220 |||||||||||||||||||| Sbjct: 161687 catttcttctctctactcta 161706
>gb|AC022509.21|AC022509 Homo sapiens 12 BAC RP11-283G6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 204228 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cttttctactggaccatttc 206 |||||||||||||||||||| Sbjct: 188421 cttttctactggaccatttc 188402
>gb|AC019183.3|AC019183 Homo sapiens BAC clone RP11-291G24 from 18, complete sequence Length = 183082 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tattgaacatttgaaatgag 35 |||||||||||||||||||| Sbjct: 166029 tattgaacatttgaaatgag 166010
>gb|AF233882.1|AF233882S1 Homo sapiens plakoglobin (JUP) gene, exons 1 through 7 Length = 10568 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 aagacagggaaaggaaaaggaaaa 85 |||| ||||||||||||||||||| Sbjct: 6499 aagagagggaaaggaaaaggaaaa 6476
>gb|AF193597.1|F193595S03 Mus musculus SON protein (Son) gene, exon 3 Length = 5880 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 cagggaaaggaaaaggaaaa 85 |||||||||||||||||||| Sbjct: 5429 cagggaaaggaaaaggaaaa 5448
>ref|XM_221656.3| PREDICTED: Rattus norvegicus Son cell proliferation protein (predicted) (Son_predicted), mRNA Length = 8372 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 cagggaaaggaaaaggaaaa 85 |||||||||||||||||||| Sbjct: 5719 cagggaaaggaaaaggaaaa 5738
>gb|AC097587.3| Sus scrofa clone RP44-50K20, complete sequence Length = 111967 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 gggaaaggaaaaggaaaaag 87 |||||||||||||||||||| Sbjct: 103719 gggaaaggaaaaggaaaaag 103700
>gb|AC116365.2| Homo sapiens chromosome 5 clone RP11-797O11, complete sequence Length = 117723 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 19488 aaaggaaaaggaaaaaggga 19507
>gb|AC146977.22| Mus musculus chromosome 13, clone RP23-106I12, complete sequence Length = 200131 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 135077 ggaaaggaaaaggaaaaagg 135058
>emb|BX005463.5| Zebrafish DNA sequence from clone CH211-177H19 in linkage group 6, complete sequence Length = 163804 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ttgaacatttgaaatgagca 37 |||||||||||||||||||| Sbjct: 115705 ttgaacatttgaaatgagca 115686
>emb|BX293568.7| Zebrafish DNA sequence from clone CH211-215F13 in linkage group 20, complete sequence Length = 221849 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aatatgtcttattgaacatt 26 |||||||||||||||||||| Sbjct: 148534 aatatgtcttattgaacatt 148553
>gb|AF193607.1|AF193607 Mus musculus truncated SON protein (Son) mRNA, complete cds Length = 6549 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 cagggaaaggaaaaggaaaa 85 |||||||||||||||||||| Sbjct: 5686 cagggaaaggaaaaggaaaa 5705
>gb|AC124191.4| Mus musculus BAC clone RP23-275E4 from 18, complete sequence Length = 203003 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 95055 aaaggaaaaggaaaaaggga 95074
>gb|AC113278.15| Mus musculus chromosome 3, clone RP23-387I7, complete sequence Length = 180681 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 53425 aaaggaaaaggaaaaaggga 53444
>gb|AE003546.4| Drosophila melanogaster chromosome 3L, section 39 of 83 of the complete sequence Length = 281589 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 tgggggcactaccgacgtattgct 142 ||||||||||||| |||||||||| Sbjct: 9762 tgggggcactaccaacgtattgct 9785
>gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16 of 83 of the complete sequence Length = 302417 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cgctattaaccaacgagcaa 162 |||||||||||||||||||| Sbjct: 169680 cgctattaaccaacgagcaa 169699
>gb|AC116783.7| Mus musculus chromosome 5, clone RP24-145D9, complete sequence Length = 168285 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agggaaaggaaaaggaaaaa 86 |||||||||||||||||||| Sbjct: 161304 agggaaaggaaaaggaaaaa 161323
>dbj|AK122418.1| Mus musculus mRNA for mKIAA1019 protein Length = 5567 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 cagggaaaggaaaaggaaaa 85 |||||||||||||||||||| Sbjct: 202 cagggaaaggaaaaggaaaa 221
>gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, complete sequence Length = 196717 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tttctactggaccatttcttctct 212 |||||||||| ||||||||||||| Sbjct: 127470 tttctactggcccatttcttctct 127447
>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete sequence Length = 242530 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ttgaacatttgaaatgagca 37 |||||||||||||||||||| Sbjct: 190653 ttgaacatttgaaatgagca 190634
>gb|AC147644.3| Gallus gallus BAC clone CH261-77K20 from chromosome unknown, complete sequence Length = 191888 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 177038 ggaaaggaaaaggaaaaagg 177057
>gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, complete sequence Length = 179732 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 62931 aaaggaaaaggaaaaaggga 62950
>emb|AL773522.15| Mouse DNA sequence from clone RP23-148P20 on chromosome 4, complete sequence Length = 185592 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 66030 ggaaaggaaaaggaaaaagg 66049
>emb|AL731829.10| Mouse DNA sequence from clone RP23-383P24 on chromosome 4 Contains part of the Astn2 gene for astrotactin 2 and a CpG island, complete sequence Length = 199452 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tttcttctctctactctacc 222 |||||||||||||||||||| Sbjct: 191726 tttcttctctctactctacc 191707
>emb|CT030657.5| Mouse DNA sequence from clone RP23-142A12 on chromosome 13, complete sequence Length = 201402 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 194661 ggaaaggaaaaggaaaaagg 194680
>gb|AC158981.2| Mus musculus BAC clone RP23-230C10 from chromosome 14, complete sequence Length = 213277 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 agggaaaggaaaaggaaaaaggga 90 |||||||||||| ||||||||||| Sbjct: 198951 agggaaaggaaagggaaaaaggga 198928 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 agggaaaggaaaaggaaaaaggga 90 |||||||||||| ||||||||||| Sbjct: 198797 agggaaaggaaagggaaaaaggga 198774
>emb|AL611970.11| Mouse DNA sequence from clone RP23-413K17 on chromosome 4, complete sequence Length = 61588 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cccagcctccctgagtgcct 310 |||||||||||||||||||| Sbjct: 53835 cccagcctccctgagtgcct 53854
>emb|AL353996.3|HS48J14 Homo sapiens chromosome 17 sequence from PAC RPCI-1 48J14 region D17S842-D17S953 map 17p11.2, complete sequence Length = 105982 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggaaaggaaaaggaaaaagg 88 |||||||||||||||||||| Sbjct: 34636 ggaaaggaaaaggaaaaagg 34655
>gb|AC156543.10| Mus musculus chromosome 15, clone RP23-220F2, complete sequence Length = 199715 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaggaaaaggaaaaaggga 90 |||||||||||||||||||| Sbjct: 108741 aaaggaaaaggaaaaaggga 108760 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,762,408 Number of Sequences: 3902068 Number of extensions: 4762408 Number of successful extensions: 118195 Number of sequences better than 10.0: 150 Number of HSP's better than 10.0 without gapping: 152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117224 Number of HSP's gapped (non-prelim): 971 length of query: 362 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 340 effective length of database: 17,147,199,772 effective search space: 5830047922480 effective search space used: 5830047922480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
