ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYR_CHLTR (O84460) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 30 1.2
2MTC2_YEAST (P53185) Protein MTC2 30 1.6
3ALR_FUSNN (Q8RGA2) Alanine racemase (EC 5.1.1.1) 29 2.7
4HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor 28 4.6
5PUR1_DROME (Q27601) Amidophosphoribosyltransferase precursor (EC... 28 4.6
6CYTSA_CHICK (Q2KN97) Cytospin-A 28 6.1
7SYR_CHLMU (Q9PJT8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 28 6.1
8AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-al... 28 7.9

>SYR_CHLTR (O84460) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 563

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +2

Query: 41  FIQICCTTEIHGTQPNI---TLDHNTVATKNITLDQMTDTPIIQRQLNCEPRDISSSMVK 211
           F+   C+  IH   P +   TLD      ++    Q  D   + R L+  PR I+ S+V 
Sbjct: 7   FLTSLCSAAIHQAFPELEELTLDITPSTKEHFGHYQCNDAMKLARVLHKSPRAIAESIVA 66

Query: 212 HLQATTEGEHQVEG 253
           H+  T     ++ G
Sbjct: 67  HIPPTPFSSIEIAG 80



to top

>MTC2_YEAST (P53185) Protein MTC2|
          Length = 909

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 16  AHLFIHSTVHPNLLHHRNSWDTTKHNARPQHSSNEEHNARPDDGHADN 159
           A++ IH  +HP +LH+ N W       +   + N+E  A   DG + N
Sbjct: 106 AYISIHKQLHPLILHNLNIW-------KDFMADNDEETATTTDGDSMN 146



to top

>ALR_FUSNN (Q8RGA2) Alanine racemase (EC 5.1.1.1)|
          Length = 354

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 98  DHNTVATKNITLDQMTDTPIIQRQLNCEPRDISSS 202
           D NT+ TKN TL+Q+     I   LN E   IS+S
Sbjct: 160 DGNTIETKNFTLEQIEKFKKIVNSLNLEYIHISNS 194



to top

>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor|
          Length = 351

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 22  LFIHSTVHPNLLHHRNSWDTTKHNARPQHSSNEEHNARPDDGH 150
           + +  TVHP  LH  +     + +  P H   E H+  P++ H
Sbjct: 46  VLVEDTVHPEHLHEEHHHHHPEEHHEPHH--EEHHHHHPEEHH 86



to top

>PUR1_DROME (Q27601) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)|
           (Glutamine phosphoribosylpyrophosphate amidotransferase)
           (ATASE) (GPAT)
          Length = 546

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
 Frame = +2

Query: 53  CCTTEIHGTQPNITLDHN-----------TVATKNITLDQMTDTPIIQRQLNCEPRDIS 196
           C   E+H T   + L HN            V  + + L   +D+ +I + L C P D+S
Sbjct: 146 CQPFEVHTTHGALALAHNGELVNNESLRREVLARGVGLSTHSDSELIAQSLCCAPEDVS 204



to top

>CYTSA_CHICK (Q2KN97) Cytospin-A|
          Length = 1118

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +2

Query: 53  CCTTEIHGTQPNITLDHNTVATKNITLDQMTDTPIIQRQLNCEPRDISSSMVKHLQATTE 232
           C T  IH  + N    H+T      TL ++ D   I ++LN E   +    V  +++  +
Sbjct: 396 CLTERIHQMEEN---QHSTAEELQATLQELADLQQITQELNSENERLGEEKVILMESLCQ 452

Query: 233 GEHQVE 250
              ++E
Sbjct: 453 QSDKLE 458



to top

>SYR_CHLMU (Q9PJT8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 563

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = +2

Query: 41  FIQICCTTEIHGTQPNI---TLDHNTVATKNITLDQMTDTPIIQRQLNCEPRDISSSMVK 211
           F+   C++ I    P +   TLD      ++    Q  D   + R L   PR I+  +V 
Sbjct: 7   FLTSLCSSAIRQAFPELEELTLDITPSTKEHFGHYQCNDAMKLARALRKSPRAIAEEIVA 66

Query: 212 HLQATTEGEHQVEG 253
           H+ AT     ++ G
Sbjct: 67  HIPATPFSSIEIAG 80



to top

>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 135 TR*RTRR*FKDS*IVSPET*AAPWSSTYRPPRRGSTK-WRVDSFWML 272
           TR RT R +    IVS    A P  ST  PPR  ST  WR    W L
Sbjct: 232 TRTRTGRSWSTGSIVSAAPTAMPRRST-SPPRASSTSPWRAIELWRL 277


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,385,490
Number of Sequences: 219361
Number of extensions: 455389
Number of successful extensions: 1602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top