Clone Name | rbart10b05 |
---|---|
Clone Library Name | barley_pub |
>SYR_CHLTR (O84460) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 563 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Frame = +2 Query: 41 FIQICCTTEIHGTQPNI---TLDHNTVATKNITLDQMTDTPIIQRQLNCEPRDISSSMVK 211 F+ C+ IH P + TLD ++ Q D + R L+ PR I+ S+V Sbjct: 7 FLTSLCSAAIHQAFPELEELTLDITPSTKEHFGHYQCNDAMKLARVLHKSPRAIAESIVA 66 Query: 212 HLQATTEGEHQVEG 253 H+ T ++ G Sbjct: 67 HIPPTPFSSIEIAG 80
>MTC2_YEAST (P53185) Protein MTC2| Length = 909 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +1 Query: 16 AHLFIHSTVHPNLLHHRNSWDTTKHNARPQHSSNEEHNARPDDGHADN 159 A++ IH +HP +LH+ N W + + N+E A DG + N Sbjct: 106 AYISIHKQLHPLILHNLNIW-------KDFMADNDEETATTTDGDSMN 146
>ALR_FUSNN (Q8RGA2) Alanine racemase (EC 5.1.1.1)| Length = 354 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = +2 Query: 98 DHNTVATKNITLDQMTDTPIIQRQLNCEPRDISSS 202 D NT+ TKN TL+Q+ I LN E IS+S Sbjct: 160 DGNTIETKNFTLEQIEKFKKIVNSLNLEYIHISNS 194
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/43 (27%), Positives = 20/43 (46%) Frame = +1 Query: 22 LFIHSTVHPNLLHHRNSWDTTKHNARPQHSSNEEHNARPDDGH 150 + + TVHP LH + + + P H E H+ P++ H Sbjct: 46 VLVEDTVHPEHLHEEHHHHHPEEHHEPHH--EEHHHHHPEEHH 86
>PUR1_DROME (Q27601) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT) Length = 546 Score = 28.5 bits (62), Expect = 4.6 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 11/59 (18%) Frame = +2 Query: 53 CCTTEIHGTQPNITLDHN-----------TVATKNITLDQMTDTPIIQRQLNCEPRDIS 196 C E+H T + L HN V + + L +D+ +I + L C P D+S Sbjct: 146 CQPFEVHTTHGALALAHNGELVNNESLRREVLARGVGLSTHSDSELIAQSLCCAPEDVS 204
>CYTSA_CHICK (Q2KN97) Cytospin-A| Length = 1118 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/66 (24%), Positives = 29/66 (43%) Frame = +2 Query: 53 CCTTEIHGTQPNITLDHNTVATKNITLDQMTDTPIIQRQLNCEPRDISSSMVKHLQATTE 232 C T IH + N H+T TL ++ D I ++LN E + V +++ + Sbjct: 396 CLTERIHQMEEN---QHSTAEELQATLQELADLQQITQELNSENERLGEEKVILMESLCQ 452 Query: 233 GEHQVE 250 ++E Sbjct: 453 QSDKLE 458
>SYR_CHLMU (Q9PJT8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 563 Score = 28.1 bits (61), Expect = 6.1 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Frame = +2 Query: 41 FIQICCTTEIHGTQPNI---TLDHNTVATKNITLDQMTDTPIIQRQLNCEPRDISSSMVK 211 F+ C++ I P + TLD ++ Q D + R L PR I+ +V Sbjct: 7 FLTSLCSSAIRQAFPELEELTLDITPSTKEHFGHYQCNDAMKLARALRKSPRAIAEEIVA 66 Query: 212 HLQATTEGEHQVEG 253 H+ AT ++ G Sbjct: 67 HIPATPFSSIEIAG 80
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 27.7 bits (60), Expect = 7.9 Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = +3 Query: 135 TR*RTRR*FKDS*IVSPET*AAPWSSTYRPPRRGSTK-WRVDSFWML 272 TR RT R + IVS A P ST PPR ST WR W L Sbjct: 232 TRTRTGRSWSTGSIVSAAPTAMPRRST-SPPRASSTSPWRAIELWRL 277 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,385,490 Number of Sequences: 219361 Number of extensions: 455389 Number of successful extensions: 1602 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1538 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1596 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)