ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC024575.6| Homo sapiens chromosome 19 clone CTD-2342J14, com... 40 0.93
2gb|AC132436.3| Mus musculus BAC clone RP23-226J18 from 1, comple... 40 0.93
3gb|AC124680.10| Mus musculus chromosome 14, clone RP23-383A19, c... 38 3.7
4emb|AL136438.10| Human DNA sequence from clone RP11-111G7 on chr... 38 3.7
5gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, com... 38 3.7
6gb|AC107928.3| Homo sapiens chromosome 11, clone RP11-412L22, co... 38 3.7
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.7
8emb|BX284612.22| Mouse DNA sequence from clone RP23-332H17 on ch... 38 3.7
9dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic D... 38 3.7
10emb|CR855879.8| Zebrafish DNA sequence from clone DKEY-237I12 in... 38 3.7
11gb|AC163693.3| Mus musculus BAC clone RP24-70O15 from chromosome... 38 3.7

>gb|AC024575.6| Homo sapiens chromosome 19 clone CTD-2342J14, complete sequence
          Length = 119638

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ccatcatgcttcatgaatgg 35
             ||||||||||||||||||||
Sbjct: 17960 ccatcatgcttcatgaatgg 17979



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>gb|AC132436.3| Mus musculus BAC clone RP23-226J18 from 1, complete sequence
          Length = 248067

 Score = 40.1 bits (20), Expect = 0.93
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     ttttacataaatgccatcat 22
             ||||||||||||||||||||
Sbjct: 28392 ttttacataaatgccatcat 28373



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>gb|AC124680.10| Mus musculus chromosome 14, clone RP23-383A19, complete sequence
          Length = 202809

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      acataaatgccatcatgct 25
              |||||||||||||||||||
Sbjct: 150013 acataaatgccatcatgct 149995



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>emb|AL136438.10| Human DNA sequence from clone RP11-111G7 on chromosome 13q11-12.3
             Contains part of the ATP8A2 gene for ATPase,
             aminophospholipid transporter-like, Class I, type 8A,
             member 2 (ML-1 protein)(IB, ATP, ML-1, ATPIB,
             DKFZP434B1913), complete sequence
          Length = 178319

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 3     ttttacataaatgccatcatgct 25
             ||||| |||||||||||||||||
Sbjct: 50697 ttttagataaatgccatcatgct 50675



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>gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, complete sequence
          Length = 157284

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    tagcatgcagttacatatt 59
             |||||||||||||||||||
Sbjct: 84970 tagcatgcagttacatatt 84988



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>gb|AC107928.3| Homo sapiens chromosome 11, clone RP11-412L22, complete sequence
          Length = 160764

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 24     cttcatgaatggatacata 42
              |||||||||||||||||||
Sbjct: 114940 cttcatgaatggatacata 114958



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 40      atagcatgcagttacatat 58
               |||||||||||||||||||
Sbjct: 2215199 atagcatgcagttacatat 2215217



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>emb|BX284612.22| Mouse DNA sequence from clone RP23-332H17 on chromosome 2, complete
            sequence
          Length = 132718

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    atttttacataaatgccat 19
            |||||||||||||||||||
Sbjct: 2175 atttttacataaatgccat 2157



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>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1351_C05
          Length = 112465

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    atagcatgcagttacatat 58
             |||||||||||||||||||
Sbjct: 83101 atagcatgcagttacatat 83119



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>emb|CR855879.8| Zebrafish DNA sequence from clone DKEY-237I12 in linkage group 10,
             complete sequence
          Length = 71257

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    aagggttggcattgcatgc 82
             |||||||||||||||||||
Sbjct: 53583 aagggttggcattgcatgc 53601



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>gb|AC163693.3| Mus musculus BAC clone RP24-70O15 from chromosome 13, complete sequence
          Length = 219890

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    catgaatggatacatagca 45
             |||||||||||||||||||
Sbjct: 96189 catgaatggatacatagca 96207


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 803,319
Number of Sequences: 3902068
Number of extensions: 803319
Number of successful extensions: 51710
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51676
Number of HSP's gapped (non-prelim): 34
length of query: 87
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 66
effective length of database: 17,151,101,840
effective search space: 1131972721440
effective search space used: 1131972721440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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