>emb|BX936355.7| Mouse DNA sequence from clone RP24-541A1 on chromosome 4 Contains part
             of a novel gene and the Cbx3-ps3 gene for chromobox
             homolog 3 (Drosophila HP1 gamma), pseudogene 3, complete
             sequence
          Length = 144108

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    tctcaaacaattaattgatca 30
             |||||||||||||||||||||
Sbjct: 76547 tctcaaacaattaattgatca 76567

>gb|AC092052.2| Homo sapiens chromosome 3 clone RP11-329N16, complete sequence
          Length = 203204

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 178   caaagttgaaagaaaatagag 198
             |||||||||||||||||||||
Sbjct: 23713 caaagttgaaagaaaatagag 23693

>emb|AL844153.3| Mouse DNA sequence from clone RP24-147L2 on chromosome 4, complete
              sequence
          Length = 193917

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     tctcaaacaattaattgatca 30
              |||||||||||||||||||||
Sbjct: 100025 tctcaaacaattaattgatca 100045

>emb|AL450337.24| Human DNA sequence from clone RP11-51B10 on chromosome 10 Contains the
             5' end of the PARD3 gene for par-3 partitioning defective
             3 homolog (C.elegans), a novel gene, a pseudogene similar
             to part of synovial sarcoma translocation, chromosome 18
             protein (SS18), a peroxiredoxin 2 (PRDX2) pseudogene and a
             CpG island, complete sequence
          Length = 173987

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   ttgaaagaaaatagaggcaa 202
             ||||||||||||||||||||
Sbjct: 16935 ttgaaagaaaatagaggcaa 16916

>emb|AL445209.4| Human DNA sequence from clone RP11-52L5 on chromosome 13 Contains a
             transcription elongation factor B (SIII), polypeptide 1
             (15kDa, elongin C) (TCEB1) pseudogene, a novel gene, the
             POU4F1 gene for POU domain, class 4, transcription factor
             1 (BRN3A, RDC-1), the 3' end a novel gene (contains
             FLJ13449, possible ortholog of mouse 2810449K13Rik
             protein) and 3 CpG islands, complete sequence
          Length = 157302

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   aaattcactccaaagttgaa 187
             ||||||||||||||||||||
Sbjct: 76975 aaattcactccaaagttgaa 76994

>emb|AL356319.18| Human DNA sequence from clone RP11-810G21 on chromosome 13 Contains a CpG
              island, complete sequence
          Length = 137260

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    actccaaagttgaaagaaaa 193
              ||||||||||||||||||||
Sbjct: 130248 actccaaagttgaaagaaaa 130229

>gb|AF535436.1| HIV-1 isolate 88USMF880113sg from USA envelope glycoprotein (env)
           gene, partial cds
          Length = 602

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 aaccaaaatagtacagctga 131
           ||||||||||||||||||||
Sbjct: 49  aaccaaaatagtacagctga 68

>emb|CR388085.9| Zebrafish DNA sequence from clone CH211-232D10, complete sequence
          Length = 149672

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   acaatcctttccaattccctctcg 231
             |||||||||||| |||||||||||
Sbjct: 49003 acaatcctttcccattccctctcg 48980

>emb|BX927130.13| Zebrafish DNA sequence from clone DKEY-27N6 in linkage group 20
             Contains seven novel genes and two CpG islands, complete
             sequence
          Length = 186518

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 208   acaatcctttccaattccctctcg 231
             |||||||||||| |||||||||||
Sbjct: 85705 acaatcctttcccattccctctcg 85682

>gb|AC182752.1| Gasterosteus aculeatus clone VMRC26-161K14, complete sequence
          Length = 162574

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    agcactttggaaacagtggg 96
             ||||||||||||||||||||
Sbjct: 36157 agcactttggaaacagtggg 36176

>gb|AC018880.6| Homo sapiens BAC clone RP11-336P15 from 2, complete sequence
          Length = 127025

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    ttgaaagaaaatagaggcaa 202
              ||||||||||||||||||||
Sbjct: 101796 ttgaaagaaaatagaggcaa 101815

>gb|AC009491.3|AC009491 Homo sapiens BAC clone RP11-418M8 from Y, complete sequence
          Length = 140934

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   agttgaaagaaaatagaggc 200
             ||||||||||||||||||||
Sbjct: 31712 agttgaaagaaaatagaggc 31731

>emb|BX005417.13| Zebrafish DNA sequence from clone DKEY-240N22, complete sequence
          Length = 175997

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   acaatcctttccaattccctctcg 231
             |||||||||||| |||||||||||
Sbjct: 75724 acaatcctttcccattccctctcg 75747

>emb|CR376730.13| Zebrafish DNA sequence from clone CH211-205A14 in linkage group 20,
             complete sequence
          Length = 156481

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   acaatcctttccaattccctctcg 231
             |||||||||||| |||||||||||
Sbjct: 32314 acaatcctttcccattccctctcg 32337

>emb|CR383671.20| Zebrafish DNA sequence from clone CH211-127B6 in linkage group 15,
              complete sequence
          Length = 132412

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 208    acaatcctttccaattccctctcg 231
              |||||||||||| |||||||||||
Sbjct: 121581 acaatcctttcccattccctctcg 121558

>emb|AL450226.1|HSBC17A99 Homo sapiens chromosome 17 sequence from PAC RP5-1037N22 map 17q13.3
             region D17S695-D17S654, complete sequence
          Length = 123454

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 187   aagaaaatagaggcaaatcacaca 210
             ||||||||||| ||||||||||||
Sbjct: 48527 aagaaaatagatgcaaatcacaca 48504

>dbj|AP006096.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10G09, TM0173b,
             complete sequence
          Length = 66866

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 149   taatccacctcttcatgggaaatt 172
             |||||||||||||||| |||||||
Sbjct: 36400 taatccacctcttcattggaaatt 36377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,809,059
Number of Sequences: 3902068
Number of extensions: 3809059
Number of successful extensions: 85308
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85286
Number of HSP's gapped (non-prelim): 22
length of query: 285
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 263
effective length of database: 17,147,199,772
effective search space: 4509713540036
effective search space used: 4509713540036
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)