ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) ... 80 3e-15
2PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein) 80 3e-15
3PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) ... 78 1e-14
4PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein) 78 1e-14
5PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein) 78 1e-14
6CACB2_BOVIN (Q9MZL5) Voltage-dependent L-type calcium channel be... 32 0.92
7NFAC3_HUMAN (Q12968) Nuclear factor of activated T-cells, cytopl... 30 3.5
8KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier fami... 29 6.0
9CACB2_HUMAN (Q08289) Voltage-dependent L-type calcium channel be... 29 6.0
10LRRN5_HUMAN (O75325) Leucine-rich repeats neuronal protein 5 pre... 29 6.0
11HPN_HELPY (P0A0V6) Histidine-rich metal-binding polypeptide 29 6.0
12HPN_HELPJ (P0A0V7) Histidine-rich, metal binding polypeptide 29 6.0
13DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila D... 29 7.8

>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber|
           protein)
          Length = 386

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 43/101 (42%), Positives = 65/101 (64%)
 Frame = -1

Query: 482 ASADMVDIHAAILFQALHIEKNYLRIQDDSLTGHTSSVDISTKANMEALIGIGNMLLKKK 303
           AS+ M D + + +FQA H + NYLR+Q+++LTG T+ +D +++ANME L+ +G  LLKK 
Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353

Query: 302 VARVNIDTGIYEPVDDEGTNEEALAHFAQKLSDERKLRLSQ 180
           V++           D   T EEAL  FA+ LSD +KLR ++
Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383



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>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)|
          Length = 386

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 43/101 (42%), Positives = 65/101 (64%)
 Frame = -1

Query: 482 ASADMVDIHAAILFQALHIEKNYLRIQDDSLTGHTSSVDISTKANMEALIGIGNMLLKKK 303
           AS+ M D + + +FQA H + NYLR+Q+++LTG T+ +D +++ANME L+ +G  LLKK 
Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353

Query: 302 VARVNIDTGIYEPVDDEGTNEEALAHFAQKLSDERKLRLSQ 180
           V++           D   T EEAL  FA+ LSD +KLR ++
Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383



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>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)|
          Length = 377

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 42/101 (41%), Positives = 65/101 (64%)
 Frame = -1

Query: 482 ASADMVDIHAAILFQALHIEKNYLRIQDDSLTGHTSSVDISTKANMEALIGIGNMLLKKK 303
           AS+ M D + + +FQA H + NYLR+Q+++LTG T+ +D +++ANME L+ +G  LLKK 
Sbjct: 285 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 344

Query: 302 VARVNIDTGIYEPVDDEGTNEEALAHFAQKLSDERKLRLSQ 180
           V++           D   T EEAL  FA+ LS+ +KLR ++
Sbjct: 345 VSK-----------DSPETYEEALKRFAKLLSNRKKLRANK 374



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>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)|
          Length = 386

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 42/101 (41%), Positives = 64/101 (63%)
 Frame = -1

Query: 482 ASADMVDIHAAILFQALHIEKNYLRIQDDSLTGHTSSVDISTKANMEALIGIGNMLLKKK 303
           AS+ M D + + +FQA H + NYLR+Q+++L G T+ +D +++ANME L+ +G  LLKK 
Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKP 353

Query: 302 VARVNIDTGIYEPVDDEGTNEEALAHFAQKLSDERKLRLSQ 180
           V++           D   T EEAL  FA+ LSD +KLR ++
Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLRANK 383



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>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)|
          Length = 386

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 43/103 (41%), Positives = 66/103 (64%)
 Frame = -1

Query: 488 SHASADMVDIHAAILFQALHIEKNYLRIQDDSLTGHTSSVDISTKANMEALIGIGNMLLK 309
           S AS+ M D + +  FQAL  + NYLR+Q+++LTG T+ +D +++ANM+ L+ +G  LLK
Sbjct: 292 SAASSYMTDYYLSTAFQALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLK 351

Query: 308 KKVARVNIDTGIYEPVDDEGTNEEALAHFAQKLSDERKLRLSQ 180
           K V++           D+  T EEAL  FA+ LSD +KLR ++
Sbjct: 352 KSVSK-----------DNPETYEEALKRFAKLLSDRKKLRANK 383



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>CACB2_BOVIN (Q9MZL5) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit)
          Length = 603

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 366 YLHQ-GEHGGAHRNWQHVAQEESGSGEHRHRDLRAR 262
           Y H+  +H   HR+  H  +E  G GEHRHR+ R R
Sbjct: 517 YSHEHADHYAPHRDHNH-REEPHGGGEHRHREPRHR 551



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>NFAC3_HUMAN (Q12968) Nuclear factor of activated T-cells, cytoplasmic 3|
           (NF-ATc3) (NFATc3) (T cell transcription factor NFAT4)
           (NF-AT4) (NFATx)
          Length = 1075

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 486 PC-KRRHGRHPRCYIISSTSH*EELPTHPGRLTHGSHILCGYLHQGEHGGA 337
           PC KRRH     CY  S + H   +P+ PG    GS     +L+   HGG+
Sbjct: 270 PCGKRRHSSAEVCYAGSLSPHHSPVPS-PGHSPRGSVTEDTWLNASVHGGS 319



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>KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier family 39 member|
           7) (Histidine-rich membrane protein Ke4)
          Length = 476

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 363 LHQGEHGGAHRNWQHVAQEESGSGEHRH 280
           LH G HG AHR   H    E+G+   +H
Sbjct: 108 LHHGGHGHAHREHSHGTSREAGAPGIKH 135



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>CACB2_HUMAN (Q08289) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit) (Lambert-Eaton myasthenic syndrome antigen B)
           (MYSB)
          Length = 660

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 351 EHGGAHRNWQHVAQEESGSGEHRHRDLRAR 262
           +H  +HR+  H   E  GS +HRHR+ R R
Sbjct: 580 DHYASHRDHNH-RDETHGSSDHRHRESRHR 608



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>LRRN5_HUMAN (O75325) Leucine-rich repeats neuronal protein 5 precursor (Glioma|
           amplified on chromosome 1 protein)
          Length = 713

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -1

Query: 488 SHASADMVDIHAAILFQALHIEKNYL-RIQDDSLTGHTSSVDISTKANM------EALIG 330
           S + A   D HA     +LH+E+N L R++D S  G  S  ++    N        A  G
Sbjct: 104 SFSDARDCDFHALPQLLSLHLEENQLTRLEDHSFAGLASLQELYLNHNQLYRIAPRAFSG 163

Query: 329 IGNMLLKKKVARVNIDTGIYEPVD 258
           + N+L      R+++++ +   +D
Sbjct: 164 LSNLL------RLHLNSNLLRAID 181



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>HPN_HELPY (P0A0V6) Histidine-rich metal-binding polypeptide|
          Length = 59

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 360 HQGEHGGAHRNWQHVAQEESGSGEHRH 280
           H+ +HGG H +  H        GEH H
Sbjct: 3   HEEQHGGHHHHHHHTHHHHYHGGEHHH 29



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>HPN_HELPJ (P0A0V7) Histidine-rich, metal binding polypeptide|
          Length = 59

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 360 HQGEHGGAHRNWQHVAQEESGSGEHRH 280
           H+ +HGG H +  H        GEH H
Sbjct: 3   HEEQHGGHHHHHHHTHHHHYHGGEHHH 29



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>DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila Delta homolog|
           3) (M-Delta-3)
          Length = 592

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
 Frame = +2

Query: 284 RCSPEPL-SS*ATCCQFR*AP--------PCSPWWRYPQRMCDP*VSRPGCVGSSSQCE 433
           RC P  + ++ A  C+ R AP        PC+P   +P     P V RPGC      CE
Sbjct: 175 RCEPPAVGAACARLCRSRSAPSRCGPGLRPCTP---FPDECEAPSVCRPGCSPEHGYCE 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,331,629
Number of Sequences: 219361
Number of extensions: 1220447
Number of successful extensions: 3399
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3389
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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