Clone Information

BLAST Search Result

Clone Name	rbart09h11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin ...	43	2e-04
2	VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein...	42	3e-04
3	VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin ...	42	3e-04
4	VDAC_PEA (P42054) Outer plastidial membrane protein porin (Volta...	42	4e-04
5	VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein...	41	6e-04
6	VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin ...	40	0.001
7	VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin ...	37	0.015
8	VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Vol...	36	0.019
9	CHKA_RAT (Q01134) Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK...	33	0.16
10	CHKA_MOUSE (O54804) Choline kinase alpha (EC 2.7.1.32) (CK) (CHE...	33	0.21
11	VP40_EHV1V (P84454) Capsid protein P40 (Virion structural gene 3...	30	1.4
12	VP40_EHV1B (P28936) Capsid protein P40 (Virion structural gene 3...	30	1.4
13	IF2_CHRVO (Q7NY13) Translation initiation factor IF-2	30	1.8
14	Y690_BORPE (Q7W014) UPF0042 protein BP0690	29	2.3
15	Y4511_BORBR (Q7WEX0) UPF0042 protein BB4511	29	2.3
16	Y4038_BORPA (Q7W3J5) UPF0042 protein BPP4038	29	2.3
17	IF2_NITWN (Q3SWP9) Translation initiation factor IF-2	29	2.3
18	H2B2_XENLA (P06900) Histone H2B.2	29	2.3
19	CT128_HUMAN (Q9BQN1) Protein C20orf128	29	2.3
20	RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, b...	29	3.1
21	FRS3_MOUSE (Q91WJ0) Fibroblast growth factor receptor substrate ...	29	3.1
22	TDH_DEIRA (Q9RTU4) L-threonine 3-dehydrogenase (EC 1.1.1.103)	29	3.1
23	VCX1_YEAST (Q99385) Vacuolar calcium ion transporter (Vacuolar C...	28	4.0
24	POLN_SFV (P08411) Nonstructural polyprotein (Polyprotein nsP1234...	28	4.0
25	PAN1_YEAST (P32521) Protein PAN1	28	5.2
26	PRGC1_HUMAN (Q9UBK2) Peroxisome proliferator-activated receptor ...	28	5.2
27	L2MU_ADE02 (P14269) Late L2 mu core protein precursor (pMu) (Pro...	28	5.2
28	IF2_RHIME (Q92SW4) Translation initiation factor IF-2	28	5.2
29	CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centroso...	28	6.8
30	NDUB4_CHICK (P48306) NADH dehydrogenase [ubiquinone] 1 beta subc...	28	6.8
31	TMPS9_HUMAN (Q7Z410) Transmembrane protease, serine 9 (EC 3.4.21...	28	6.8
32	FHOD1_HUMAN (Q9Y613) FH1/FH2 domain-containing protein (Formin h...	28	6.8
33	SECA1_MYCTU (P0A5Y8) Preprotein translocase secA 1 subunit	28	6.8
34	SECA1_MYCBO (P0A5Y9) Preprotein translocase secA 1 subunit	28	6.8
35	GPX42_MOUSE (Q91XR9) Phospholipid hydroperoxide glutathione pero...	28	6.8
36	BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein...	28	6.8
37	KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C...	27	8.9
38	HAK10_ORYSA (Q67VS5) Potassium transporter 10 (OsHAK10)	27	8.9
39	SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non...	27	8.9
40	MINK1_MOUSE (Q9JM52) Misshapen-like kinase 1 (EC 2.7.11.1) (Mito...	27	8.9
41	IER5_HUMAN (Q5VY09) Immediate early response gene 5 protein	27	8.9
42	CPB3_CAEEL (O01835) Cytoplasmic polyadenylation element-binding ...	27	8.9
43	SOX30_HUMAN (O94993) Transcription factor SOX-30	27	8.9
44	DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp...	27	8.9
45	RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun...	27	8.9
46	PININ_MOUSE (O35691) Pinin	27	8.9
47	H2B_CHICK (P02279) Histone H2B	27	8.9
48	H2B_CAIMO (P14001) Histone H2B	27	8.9
49	RL25_THEMA (Q9X1W2) 50S ribosomal protein L25 (General stress pr...	27	8.9
50	ZBT7B_HUMAN (O15156) Zinc finger and BTB domain-containing prote...	27	8.9
51	PCSK4_RAT (Q78EH2) Proprotein convertase subtilisin/kexin type 4...	27	8.9
52	NRF6_CAEEL (Q09225) Nose resistant to fluoxetine protein 6 precu...	27	8.9
53	CD97_MOUSE (Q9Z0M6) CD97 antigen precursor	27	8.9
54	PCSK4_MOUSE (P29121) Proprotein convertase subtilisin/kexin type...	27	8.9
55	GL6S_CAPHI (P50426) N-acetylglucosamine-6-sulfatase precursor (E...	27	8.9
56	DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp...	27	8.9
57	ZBT7B_MOUSE (Q64321) Zinc finger and BTB domain-containing prote...	27	8.9

>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2|
           (Voltage-dependent anion-selective channel protein 2)
           (VDAC 2)
          Length = 273

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -1

Query: 401 EWRPKSYVTLSAEYDPKVVSSPARFGVAVALSP 303
           EWRPKS+ T+S E D K +   A+ G+A+AL P
Sbjct: 241 EWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 273

to top

>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC) (POM 34)
          Length = 275

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = -1

Query: 401 EWRPKSYVTLSAEYDPKVVSSPARFGVAVALSP 303
           EWRPKS  T+S E D K V   A+FG+A+AL P
Sbjct: 243 EWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 275

to top

>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC)
          Length = 273

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = -1

Query: 401 EWRPKSYVTLSAEYDPKVVSSPARFGVAVALSP 303
           EWRPKS  T+SAE D K +   ++ G+AVAL P
Sbjct: 241 EWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 273

to top

>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent|
           anion-selective channel protein) (VDAC)
          Length = 275

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = -1

Query: 401 EWRPKSYVTLSAEYDPKVVSSPARFGVAVALSP 303
           EWRPKS +T+S+E D K +   A+ G+++AL P
Sbjct: 243 EWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 275

to top

>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC) (POM 36)
          Length = 275

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = -1

Query: 401 EWRPKSYVTLSAEYDPKVVSSPARFGVAVALSP 303
           EWRPKS  T+S E D + +   A+ G+AVAL P
Sbjct: 243 EWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 275

to top

>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1|
           (Voltage-dependent anion-selective channel protein 1)
           (VDAC 1)
          Length = 275

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = -1

Query: 401 EWRPKSYVTLSAEYDPKVVSSPARFGVAVALSP 303
           EW+PKS+ T+S E D K +   A+ G+A+AL P
Sbjct: 243 EWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 275

to top

>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC)
          Length = 275

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -1

Query: 401 EWRPKSYVTLSAEYDPKVVSSPARFGVAVALSP 303
           E+ PKS  T+SAE D K +   ++ G+A+AL P
Sbjct: 243 EFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275

to top

>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent|
           anion-selective channel protein) (VDAC)
          Length = 277

 Score = 36.2 bits (82), Expect = 0.019
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 401 EWRPKSYVTLSAEYDPKVVSSPARFGVAVAL 309
           EWRPKS+VT+S + D K +    + G+++ L
Sbjct: 245 EWRPKSFVTISGDVDTKAIEKSTKVGLSLVL 275

to top

>CHKA_RAT (Q01134) Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK-alpha)|
          Length = 453

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
 Frame = -3

Query: 372 VGRVRPQGGELAGKVRRGRGPQPLIAGRPAPPPLPV-----------QQRQRYARRLYM 229
           VG+ R   GEL  K   GR  QPL    P PPPLP+           Q   R  RR Y+
Sbjct: 32  VGQQRDAAGELESKQLGGRS-QPLALPPPPPPPLPLPPPPSPPLADEQPEPRTRRRAYL 89

to top

>CHKA_MOUSE (O54804) Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK-alpha)|
          Length = 453

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
 Frame = -3

Query: 372 VGRVRPQGGELAGKVRRGRGPQPLIAGRPAPPPLPV-----------QQRQRYARRLYM 229
           VG+ R   GEL  K   GR  QPL    P PPPLP+           Q   R  RR Y+
Sbjct: 32  VGQQRDAAGELESKQLGGR-TQPLALPPPPPPPLPLPPPPSPPLADEQPEPRTRRRAYL 89

to top

>VP40_EHV1V (P84454) Capsid protein P40 (Virion structural gene 35 protein)|
           [Contains: Capsid protein VP24 (EC 3.4.21.97)
           (Assemblin) (Protease); Capsid protein VP22A; Gene 35.5
           protein; C-terminal peptide]
          Length = 646

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 348 GELAGKVRRGRGPQP-LIAGRPAPPPLPVQQRQRYARR 238
           G LA   +  +G  P +I G    PPL  QQ +RYAR+
Sbjct: 412 GALAADRKATKGSDPHVIQGSQCSPPLSPQQERRYARK 449

to top

>VP40_EHV1B (P28936) Capsid protein P40 (Virion structural gene 35 protein)|
           [Contains: Capsid protein VP24 (EC 3.4.21.97)
           (Assemblin) (Protease); Capsid protein VP22A; Gene 35.5
           protein; C-terminal peptide]
          Length = 646

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 348 GELAGKVRRGRGPQP-LIAGRPAPPPLPVQQRQRYARR 238
           G LA   +  +G  P +I G    PPL  QQ +RYAR+
Sbjct: 412 GALAADRKATKGSDPHVIQGSQCSPPLSPQQERRYARK 449

to top

>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2|
          Length = 964

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 396 EAQVVRDAVGRVRPQGGELAGKVRRGRGPQP--LIAGRPAPPPLPVQQRQRYARR 238
           EA+  R A  R R Q   +  K+ R    Q   L A +PAP P PV + QR  RR
Sbjct: 178 EAEEKRQAAFRAR-QEALMREKIEREERRQAAKLAASQPAPEPAPVVEPQREERR 231

to top

>Y690_BORPE (Q7W014) UPF0042 protein BP0690|
          Length = 290

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 220 SVGHIQASCVTLALLYREGRRRGPTGDQGLRATATPNLA 336
           SV  + A+  TL   Y E RRR P  D+  R   TP+LA
Sbjct: 83  SVIFLDANTDTLVQRYSESRRRHPLTDRLARGGKTPSLA 121

to top

>Y4511_BORBR (Q7WEX0) UPF0042 protein BB4511|
          Length = 290

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 220 SVGHIQASCVTLALLYREGRRRGPTGDQGLRATATPNLA 336
           SV  + A+  TL   Y E RRR P  D+  R   TP+LA
Sbjct: 83  SVIFLDANTDTLVQRYSESRRRHPLTDRLARGGKTPSLA 121

to top

>Y4038_BORPA (Q7W3J5) UPF0042 protein BPP4038|
          Length = 290

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 220 SVGHIQASCVTLALLYREGRRRGPTGDQGLRATATPNLA 336
           SV  + A+  TL   Y E RRR P  D+  R   TP+LA
Sbjct: 83  SVIFLDANTDTLVQRYSESRRRHPLTDRLARGGKTPSLA 121

to top

>IF2_NITWN (Q3SWP9) Translation initiation factor IF-2|
          Length = 871

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 330 VRRGRGP-QPLIAGRPAPPPLPVQQRQR 250
           VRR  GP +P+IA +PA  P P +QR R
Sbjct: 218 VRRPGGPARPVIAPKPAAKPAPAKQRGR 245

to top

>H2B2_XENLA (P06900) Histone H2B.2|
          Length = 125

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 122 PAKMSPAPRQGFRGPIPITVVTPKKKTETRKNHRSDIY 235
           PAK +PAP++G +  +     TPKK  + R+  R + Y
Sbjct: 3   PAKSAPAPKKGSKKAV---TKTPKKDGKKRRKSRKESY 37

to top

>CT128_HUMAN (Q9BQN1) Protein C20orf128|
          Length = 733

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = +1

Query: 169 TNNRCNPKKKNRDQKESSVGHIQASCVTLALLYREGRRRGPTGDQGLRATATPNLAG--- 339
           TN+   P ++  D++  ++GH Q   +T    +   R  GP G  GL  ++    AG   
Sbjct: 598 TNSSARPARRAPDERRQTLGHSQLDLIT---KFGPFRGEGP-GPNGLPISSPARTAGAGS 653

Query: 340 ---ELTTLGSYSADSVTYDLGLH 399
              +  TLG    D +T    LH
Sbjct: 654 GDEKRLTLGHSKLDLITKYHQLH 676

to top

>RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, beta and beta'|
            chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase
            beta chain (Transcriptase beta chain) (RNA polymerase
            beta subunit); DNA-directed RNA polymerase beta' chain
            (Transcri
          Length = 2894

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
 Frame = +2

Query: 77   RPITSQAGRQ--ANRRNPAKMSPAPR-----------QGFRGPIPITVVTPKKKTETRKN 217
            R  T+  G++  ANRRN A +   PR           +     + IT+V  KK++ET + 
Sbjct: 2329 RTYTNSKGQKIVANRRNAAILVVEPRIKAEFDGELEVENVHDEVHITIVGDKKRSETYRL 2388

Query: 218  HRSDIYK 238
             + D+ K
Sbjct: 2389 RKDDVAK 2395

to top

>FRS3_MOUSE (Q91WJ0) Fibroblast growth factor receptor substrate 3 (FGFR|
           substrate 3) (FRS2-beta)
          Length = 491

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 324 RGRGPQ-PLIAGRPAPPPLPVQQRQRYA 244
           R +GPQ P ++G P P P PV+    YA
Sbjct: 428 RPKGPQNPSVSGAPGPTPHPVRSSDSYA 455

to top

>TDH_DEIRA (Q9RTU4) L-threonine 3-dehydrogenase (EC 1.1.1.103)|
          Length = 348

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 216 IIGRTYTSVVRNAGAVVQGGEEARADRRSGAEGH---GHAEPCR 338
           ++G  Y  VV   G+ V+G E    DR SG EGH   GH   CR
Sbjct: 60  VVGHEYVGVVAGMGSEVRGFE--IGDRVSG-EGHVTCGHCRNCR 100

to top

>VCX1_YEAST (Q99385) Vacuolar calcium ion transporter (Vacuolar Ca(2+)/H(+)|
           exchanger) (High copy number undoes manganese protein 1)
           (Manganese resistance 1 protein)
          Length = 411

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 220 MILSGLCFFFWGYNGYWYWPTETLSRSWAHFCGISPISL--PAGLRSYWP 77
           +++ GLCF F GYN       +T +++ +    I+  SL  PA  R+  P
Sbjct: 135 LLVLGLCFIFGGYNRVQQTFNQTAAQTMSSLLAIACASLLIPAAFRATLP 184

to top

>POLN_SFV (P08411) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
            (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.15
          Length = 2432

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 95   AGRQANRRNPA--KMSPAPRQGFRGPIPIT 178
            A R A R  PA  K +PAPR  FR  +P+T
Sbjct: 1757 ASRAAERPVPAPRKPTPAPRTAFRNKLPLT 1786

to top

>PAN1_YEAST (P32521) Protein PAN1|
          Length = 1480

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 357  PQGGELAGKVRRGRGPQPLIAGR--PAPPPLPVQQ 259
            P    +A  V++     P +AG   P PPPLP QQ
Sbjct: 1375 PSAPAIATAVQKSGSSTPALAGGVLPPPPPLPTQQ 1409

to top

>PRGC1_HUMAN (Q9UBK2) Peroxisome proliferator-activated receptor gamma|
           coactivator 1-alpha (PPAR gamma coactivator 1-alpha)
           (PPARGC-1-alpha) (PGC-1-alpha) (Ligand effect modulator
           6)
          Length = 798

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +1

Query: 166 NTNNRCNPKKKNRDQKESSVGHIQASCVTLALLYREGRRRGPTGDQGLRATATPNLAGEL 345
           ++ ++C  KKK+  Q +S   H+QA   TL+L         P G      T    L+ EL
Sbjct: 231 SSRDKCTSKKKSHTQSQSQ--HLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVEL 288

Query: 346 T 348
           +
Sbjct: 289 S 289

to top

>L2MU_ADE02 (P14269) Late L2 mu core protein precursor (pMu) (Protein X) (pX)|
           (11 kDa core protein)
          Length = 79

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 273 GEEARADRRSGAEGHGHAEPCRRAHH 350
           G   R  RR G  GHG     RRAHH
Sbjct: 12  GFRGRMHRRRGMAGHGLTGGMRRAHH 37

to top

>IF2_RHIME (Q92SW4) Translation initiation factor IF-2|
          Length = 889

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -3

Query: 327 RRGRGPQPLIAGRPAPPPLPVQQRQRYAR 241
           +R   PQP  +GRPAP P P Q RQ   R
Sbjct: 75  QRPMPPQP--SGRPAPQPQPHQPRQEQNR 101

to top

>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated|
            protein of 350 kDa)
          Length = 3117

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +2

Query: 50   TKPLYISSSRPITSQAGRQANRRNPAKMSPAPRQGFRGPIPITVVTPKKKTETRKN 217
            T PL  SS + +       ++ R+ + + P    GF+   P+T + P     T +N
Sbjct: 1255 TSPLSPSSQKSLQFDVAGTSSERSKSSVMPPTITGFKPNAPLTDLNPAASRTTTEN 1310

to top

>NDUB4_CHICK (P48306) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit|
           4 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone
           oxidoreductase B15 subunit) (Complex I-B15) (CI-B15)
           (Hypothetical protein Walter) (GGHPW)
          Length = 133

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 401 EWRPKSYVTLSAEYDPKVVSSP 336
           E+RP  YV+L AE DP    +P
Sbjct: 12  EYRPNRYVSLPAELDPATYDTP 33

to top

>TMPS9_HUMAN (Q7Z410) Transmembrane protease, serine 9 (EC 3.4.21.-)|
           (Polyserase-1) (Polyserase-I) (Polyserine protease 1)
           [Contains: Serase-1; Serase-2; Serase-3]
          Length = 1059

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 345 ELAGKVRRGRGPQPLIAGRPAPPP 274
           ELAG VRR R  +P+    PAP P
Sbjct: 920 ELAGPVRRSRLVRPICLPEPAPRP 943

to top

>FHOD1_HUMAN (Q9Y613) FH1/FH2 domain-containing protein (Formin homolog|
           overexpressed in spleen) (FHOS) (Formin homology 2
           domain-containing protein 1)
          Length = 1163

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 312 PQPLIAGRPAPPPLP 268
           P PL++G P PPPLP
Sbjct: 574 PLPLLSGVPPPPPLP 588

to top

>SECA1_MYCTU (P0A5Y8) Preprotein translocase secA 1 subunit|
          Length = 949

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -3

Query: 393  AQVVRDAVGRVRPQGGELAGKVRRGRGPQPLIAGRPAPPPLPVQQR 256
            AQV R+  G  +   G  AG  RR R       GR A PP  V++R
Sbjct: 904  AQVQRNGGGAHKTPAGVPAGASRRERREAARRQGRGAKPPKSVKKR 949

to top

>SECA1_MYCBO (P0A5Y9) Preprotein translocase secA 1 subunit|
          Length = 949

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -3

Query: 393  AQVVRDAVGRVRPQGGELAGKVRRGRGPQPLIAGRPAPPPLPVQQR 256
            AQV R+  G  +   G  AG  RR R       GR A PP  V++R
Sbjct: 904  AQVQRNGGGAHKTPAGVPAGASRRERREAARRQGRGAKPPKSVKKR 949

to top

>GPX42_MOUSE (Q91XR9) Phospholipid hydroperoxide glutathione peroxidase, nuclear|
           (EC 1.11.1.12) (GPX-4)
          Length = 253

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -3

Query: 369 GRVRPQGGELAGKVRRGRGPQPLIAGRPAPPPLPVQQRQRYARR 238
           GR R +GG   G+ RRG G Q   + R  P P   + R R  RR
Sbjct: 10  GRCRQRGGSPRGRRRRGPGRQ---SPRKRPGPRRRKARARRRRR 50

to top

>BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein homolog|
          Length = 1849

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 178  RCNPKKKNRDQKESSVGHIQASCVTLALLYREGRRRGPTGD 300
            +C  K+ ++ + ES   H+QA C T+     + + R P  D
Sbjct: 895  KCRQKEDSQGKSESKSQHVQAICTTVHFPVADQQDRTPGDD 935

to top

>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 757

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 354 QGGELAGKVRRGRGPQPLIAGRPAPPPLPVQQRQ 253
           +G + A K +    PQP     P PPPLP QQ+Q
Sbjct: 11  RGRQGASKQQPAPPPQP--PESPPPPPLPPQQQQ 42

to top

>HAK10_ORYSA (Q67VS5) Potassium transporter 10 (OsHAK10)|
          Length = 843

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 348 GELAGKVRRGRGPQPLIAGRPAPPPLPVQQRQR 250
           G   G  R G G + +++  P+PPP+ V  R+R
Sbjct: 723 GSGRGSSRGGGGAREIMSPSPSPPPVVVAPRKR 755

to top

>SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta|
            chain 3) (Beta-IV spectrin)
          Length = 2564

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -3

Query: 366  RVRPQGGELAGKVRRGRGPQPLIAGRPAPPPLPVQQRQ 253
            R RP+ G   G  RR R         PAPPP P    Q
Sbjct: 2383 RPRPREGGEGGGSRRSRSAPAQGGSAPAPPPPPTHTVQ 2420

to top

>MINK1_MOUSE (Q9JM52) Misshapen-like kinase 1 (EC 2.7.11.1) (Mitogen-activated|
           protein kinase kinase kinase kinase 6) (MAPK/ERK kinase
           kinase kinase 6) (MEK kinase kinase 6) (MEKKK 6)
           (Misshapen/NIK-related kinase) (GCK family kinase MiNK)
          Length = 1308

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 393 AQVVRDAVGRVRPQGGELAGKVRRGRGPQPLIAGRPAPPPLPVQQ 259
           A+ V +     + Q   LA + + G GP+P I+     PP P+ Q
Sbjct: 522 AREVEERARMNKQQNSPLAKRSQAGAGPEPPISQASPSPPGPLSQ 566

to top

>IER5_HUMAN (Q5VY09) Immediate early response gene 5 protein|
          Length = 327

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 335 PASSPP--WGRTRPTASRTTWAST 400
           PA+ PP  WG   P A+R +W  T
Sbjct: 75  PAAGPPAGWGEPPPPAARASWPET 98

to top

>CPB3_CAEEL (O01835) Cytoplasmic polyadenylation element-binding protein 3|
          Length = 751

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  ISSSRPITSQAGRQANRRNPA-KMSPAPRQGFRGPIPITVVTPKKKTETRKNHRSDIYK 238
           I + R I +++  + N+  P+ K+SP    G + P P TV    K     K H+SD  K
Sbjct: 10  IGNERSIVAKSTERKNKIPPSLKLSPVESVGEKSPTPATVYDLFK-----KYHKSDSVK 63

to top

>SOX30_HUMAN (O94993) Transcription factor SOX-30|
          Length = 753

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 312 PQPLIAGRPAPPPLPVQ 262
           P+PL   RPAPPPLPV+
Sbjct: 12  PRPL---RPAPPPLPVE 25

to top

>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 357 PQGGEL-AGKVRRGRGPQPLIAGRPAPPPLP 268
           PQG  + AG+   G GP P  AGR APPP P
Sbjct: 232 PQGMWVPAGQAIGGYGPPP--AGRGAPPPPP 260

to top

>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 386  SYVTLSAEYDPKVVSSPARFGVAVALSP*SPVGPRLLPS 270
            SY   SA+Y P +  SP+   ++ A SP SP  P   P+
Sbjct: 1726 SYNPQSAKYSPSIAYSPSNARLSPA-SPYSPTSPNYSPT 1763

to top

>PININ_MOUSE (O35691) Pinin|
          Length = 725

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 363 VRPQGGELAGKVRRGRGPQPLIAGRPAPPPLPVQQRQRYAR 241
           V  +  E   K  +   PQP    +P PPP P+ Q Q +++
Sbjct: 453 VEKESEEKEEKEEKEPEPQPEPVAQPQPPPQPLPQSQPHSQ 493

to top

>H2B_CHICK (P02279) Histone H2B|
          Length = 125

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 122 PAKMSPAPRQGFRGPIPITVVTPKKKTETRKNHRSDIY 235
           PAK +PAP++G +  +     T KK  + RK  R + Y
Sbjct: 3   PAKSAPAPKKGSKKAV---TKTQKKGDKKRKKSRKESY 37

to top

>H2B_CAIMO (P14001) Histone H2B|
          Length = 125

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 122 PAKMSPAPRQGFRGPIPITVVTPKKKTETRKNHRSDIY 235
           PAK +PAP++G +  +     T KK  + RK  R + Y
Sbjct: 3   PAKSAPAPKKGSKKAV---TKTQKKGDKKRKKSRKESY 37

to top

>RL25_THEMA (Q9X1W2) 50S ribosomal protein L25 (General stress protein CTC)|
          Length = 215

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 366 RVRPQGGELAGKVRRGRGPQPLIAGRPAPPPLPVQQRQRYARRLY 232
           RVR   G+   +  R RG  P +   PA  P+PV+ ++    +++
Sbjct: 7   RVREVKGKREARRLRRRGEVPAVVYGPATEPIPVKIKRSVLEKIF 51

to top

>ZBT7B_HUMAN (O15156) Zinc finger and BTB domain-containing protein 7B (Zinc|
           finger protein 67 homolog) (Zfp-67) (Zinc finger protein
           Th-POK) (T-helper-inducing POZ/Kruppel-like factor)
           (Kruppel-related zinc finger protein cKrox) (hcKrox)
           (Zinc finger and
          Length = 539

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 312 PQPLIAGRPAPPPLPVQQRQRYARRLYMSDR 220
           PQ  +   P PPP PV +R R  R+ ++  +
Sbjct: 182 PQVPLPPPPPPPPRPVARRSRKPRKAFLQTK 212

to top

>PCSK4_RAT (Q78EH2) Proprotein convertase subtilisin/kexin type 4 precursor|
           (EC 3.4.21.-) (PC4) (Neuroendocrine convertase 3) (NEC
           3) (Prohormone convertase 3) (KEX2-like endoprotease 3)
          Length = 678

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 265 TTAPALRTTLVYVRPMILSGLCFFFWGYNGYWYW 164
           T+    R+TLV +RP+ +SG  +  W +    YW
Sbjct: 510 TSPMGTRSTLVAIRPLDISGQGYNNWIFMSTHYW 543

to top

>NRF6_CAEEL (Q09225) Nose resistant to fluoxetine protein 6 precursor (Protein|
           nrf-6)
          Length = 822

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 21/88 (23%), Positives = 33/88 (37%)
 Frame = -1

Query: 281 LLPSLYNSASVTHDACICPTDDSFWSLFFFLGLQRLLVLAHGNLV*ELGSFLRDFSD*PA 102
           L+P+L N     H   I     +  S FF  G+                SF +       
Sbjct: 407 LVPTLINFPKQFHTQIIVQAPLAVDSFFFLSGMLAAF------------SFFKKTMKADP 454

Query: 101 CRPAKLLAGNWKYTEVLYFRHTLRLLPS 18
             P KL A NW+   + Y++  +R+ P+
Sbjct: 455 NHPPKLSAFNWQTWPMYYYKRYIRITPT 482

to top

>CD97_MOUSE (Q9Z0M6) CD97 antigen precursor|
          Length = 818

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 205 LCFFFWGYNGYWYWPTETLSRSWAHFC 125
           +C F+  +NG  YW T+  S +   FC
Sbjct: 481 ICAFWKAHNGNGYWDTDGCSMNGTGFC 507

to top

>PCSK4_MOUSE (P29121) Proprotein convertase subtilisin/kexin type 4 precursor|
           (EC 3.4.21.-) (PC4) (Neuroendocrine convertase 3) (NEC
           3) (Prohormone convertase 3) (KEX2-like endoprotease 3)
          Length = 655

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 265 TTAPALRTTLVYVRPMILSGLCFFFWGYNGYWYW 164
           T+    R+TLV +RP+ +SG  +  W +    YW
Sbjct: 510 TSPMGTRSTLVAIRPLDISGQGYNNWIFMSTHYW 543

to top

>GL6S_CAPHI (P50426) N-acetylglucosamine-6-sulfatase precursor (EC 3.1.6.14)|
           (G6S) (Glucosamine-6-sulfatase)
          Length = 559

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 327 RRGRGPQPLIAGRPAPPPLP 268
           RRG GP+ L +G PAPPP P
Sbjct: 12  RRG-GPRHLPSGSPAPPPPP 30

to top

>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 357 PQGGEL-AGKVRRGRGPQPLIAGRPAPPPLP 268
           PQG  + AG+   G GP P  AGR APPP P
Sbjct: 232 PQGMWVPAGQAIGGYGPPP--AGRGAPPPPP 260

to top

>ZBT7B_MOUSE (Q64321) Zinc finger and BTB domain-containing protein 7B (Zinc|
           finger protein 67) (Zfp-67) (Zinc finger protein Th-POK)
           (T-helper-inducing POZ/Kruppel-like factor)
           (Kruppel-related zinc finger protein cKrox) (c-Krox)
          Length = 544

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 312 PQPLIAGRPAPPPLPVQQRQRYARRLYMSDR 220
           PQ  +   P PPP PV +R R  R+ ++  +
Sbjct: 186 PQVPLLPPPPPPPRPVARRSRKPRKAFLQTK 216


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,163,244
Number of Sequences: 219361
Number of extensions: 1302538
Number of successful extensions: 5487
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 4981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5467
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result