Clone Name | rbart09h11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 46.1 bits (23), Expect = 0.087 Identities = 44/51 (86%) Strand = Plus / Minus Query: 318 ggccacgccgaaccttgccggcgagctcaccaccttggggtcgtactcggc 368 |||||||||||| |||| ||||| |||||||| ||||| || |||||||| Sbjct: 91814 ggccacgccgaatcttgaaggcgaactcaccactttgggatcatactcggc 91764
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.087 Identities = 44/51 (86%) Strand = Plus / Minus Query: 318 ggccacgccgaaccttgccggcgagctcaccaccttggggtcgtactcggc 368 |||||||||||| |||| ||||| |||||||| ||||| || |||||||| Sbjct: 2054391 ggccacgccgaatcttgaaggcgaactcaccactttgggatcatactcggc 2054341
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.087 Identities = 44/51 (86%) Strand = Plus / Minus Query: 318 ggccacgccgaaccttgccggcgagctcaccaccttggggtcgtactcggc 368 |||||||||||| |||| ||||| |||||||| ||||| || |||||||| Sbjct: 2054403 ggccacgccgaatcttgaaggcgaactcaccactttgggatcatactcggc 2054353
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 46.1 bits (23), Expect = 0.087 Identities = 26/27 (96%) Strand = Plus / Plus Query: 318 ggccacgccgaaccttgccggcgagct 344 ||||||||||||||||| ||||||||| Sbjct: 1681968 ggccacgccgaaccttgtcggcgagct 1681994
>dbj|AK073584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050N14, full insert sequence Length = 1242 Score = 46.1 bits (23), Expect = 0.087 Identities = 44/51 (86%) Strand = Plus / Minus Query: 318 ggccacgccgaaccttgccggcgagctcaccaccttggggtcgtactcggc 368 |||||||||||| |||| ||||| |||||||| ||||| || |||||||| Sbjct: 946 ggccacgccgaatcttgaaggcgatctcaccactttgggatcatactcggc 896
>dbj|AK060148.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-C01, full insert sequence Length = 1188 Score = 46.1 bits (23), Expect = 0.087 Identities = 44/51 (86%) Strand = Plus / Minus Query: 318 ggccacgccgaaccttgccggcgagctcaccaccttggggtcgtactcggc 368 |||||||||||| |||| ||||| |||||||| ||||| || |||||||| Sbjct: 937 ggccacgccgaatcttgaaggcgaactcaccactttgggatcatactcggc 887
>dbj|AK100231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049J19, full insert sequence Length = 1608 Score = 44.1 bits (22), Expect = 0.34 Identities = 43/50 (86%) Strand = Plus / Minus Query: 319 gccacgccgaaccttgccggcgagctcaccaccttggggtcgtactcggc 368 ||||||||||| |||| ||||| |||||||| ||||| || |||||||| Sbjct: 994 gccacgccgaatcttgaaggcgaactcaccactttgggatcatactcggc 945
>emb|CR339042.13| Zebrafish DNA sequence from clone CH211-268L18 in linkage group 21, complete sequence Length = 176058 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 agcgtatgcctaaaatacaaa 54 ||||||||||||||||||||| Sbjct: 48253 agcgtatgcctaaaatacaaa 48233
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 gccggcgagctcaccaccttg 354 ||||||||||||||||||||| Sbjct: 26279047 gccggcgagctcaccaccttg 26279067
>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455H11 Length = 101607 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 gccggcgagctcaccaccttg 354 ||||||||||||||||||||| Sbjct: 53675 gccggcgagctcaccaccttg 53695
>emb|AL845282.12| Zebrafish DNA sequence from clone DKEY-28P18 in linkage group 21, complete sequence Length = 192865 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 agcgtatgcctaaaatacaaa 54 ||||||||||||||||||||| Sbjct: 189214 agcgtatgcctaaaatacaaa 189194
>ref|NM_192170.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1614 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 cagggaggggaggaggcgcg 286 |||||||||||||||||||| Sbjct: 192 cagggaggggaggaggcgcg 173
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 tcggccgacagcgtcacgta 383 |||||||||||||||||||| Sbjct: 936212 tcggccgacagcgtcacgta 936231
>ref|NM_026200.1| Mus musculus potassium channel, subfamily V, member 1 (Kcnv1), mRNA Length = 4390 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tacaaaacctctgtatattt 68 |||||||||||||||||||| Sbjct: 1718 tacaaaacctctgtatattt 1737
>gb|AY292501.1| Fundulus heteroclitus CYP1A gene, promoter region, exons 1 and 2 and partial cds Length = 2554 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 acagggaggggaggaggcgc 285 |||||||||||||||||||| Sbjct: 781 acagggaggggaggaggcgc 762
>gb|AC091464.8| Mus musculus chromosome 14, clone RP23-97N1, complete sequence Length = 237814 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gggaggggaggaggcgcggg 288 |||||||||||||||||||| Sbjct: 19173 gggaggggaggaggcgcggg 19192
>ref|XM_843086.1| Leishmania major strain Friedlin dual specificity protein phosphatase (LMJ_0484) partial mRNA Length = 1059 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 tcggccgacagcgtcacgta 383 |||||||||||||||||||| Sbjct: 710 tcggccgacagcgtcacgta 691
>gb|AC129590.4| Mus musculus BAC clone RP24-428B12 from chromosome 14, complete sequence Length = 180177 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 gggaggggaggaggcgcggg 288 |||||||||||||||||||| Sbjct: 46740 gggaggggaggaggcgcggg 46721
>gb|AC105141.7| Homo sapiens chromosome 8, clone CTD-3110J21, complete sequence Length = 137952 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 gggaggggaggaggcgcgggccga 292 |||||||||||||||| ||||||| Sbjct: 83839 gggaggggaggaggcgtgggccga 83862
>gb|AC105206.8| Homo sapiens chromosome 8, clone CTD-2530N21, complete sequence Length = 218931 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 gggaggggaggaggcgcgggccga 292 |||||||||||||||| ||||||| Sbjct: 76420 gggaggggaggaggcgtgggccga 76443
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 caggctaatcggagaaatcc 123 |||||||||||||||||||| Sbjct: 241814 caggctaatcggagaaatcc 241795
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cgacagcgtcacgtacgact 388 |||||||||||||||||||| Sbjct: 71402 cgacagcgtcacgtacgact 71383
>dbj|AK139482.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830098K13 product:potassium channel, subfamily V, member 1, full insert sequence Length = 3617 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tacaaaacctctgtatattt 68 |||||||||||||||||||| Sbjct: 1661 tacaaaacctctgtatattt 1680
>gb|AC099642.4| Mus musculus chromosome 15, clone RP24-346F18, complete sequence Length = 138009 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tacaaaacctctgtatattt 68 |||||||||||||||||||| Sbjct: 78225 tacaaaacctctgtatattt 78244
>dbj|AK081373.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130012C08 product:unclassifiable, full insert sequence Length = 3667 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gggaggggaggaggcgcggg 288 |||||||||||||||||||| Sbjct: 2276 gggaggggaggaggcgcggg 2295
>dbj|AK012275.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700023A03 product:POTASSIUM CHANNEL KV8.1 homolog [Mesocricetus auratus], full insert sequence Length = 2757 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tacaaaacctctgtatattt 68 |||||||||||||||||||| Sbjct: 1620 tacaaaacctctgtatattt 1639
>dbj|AK076120.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810422A08 product:POTASSIUM CHANNEL KV8.1 homolog [Mesocricetus auratus], full insert sequence Length = 1857 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tacaaaacctctgtatattt 68 |||||||||||||||||||| Sbjct: 1594 tacaaaacctctgtatattt 1613
>dbj|AK034091.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330155M08 product:POTASSIUM CHANNEL KV8.1 homolog [Mesocricetus auratus], full insert sequence Length = 4390 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tacaaaacctctgtatattt 68 |||||||||||||||||||| Sbjct: 1718 tacaaaacctctgtatattt 1737
>gb|DQ073469.1| Fundulus heteroclitus sex female cytochrome P450 1A (CYP1A) gene, exons 1, 2 and partial cds Length = 1919 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 acagggaggggaggaggcgc 285 |||||||||||||||||||| Sbjct: 374 acagggaggggaggaggcgc 355
>gb|DQ073468.1| Fundulus heteroclitus sex male cytochrome P450 1A (CYP1A) gene, exons 1, 2 and partial cds Length = 2317 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 acagggaggggaggaggcgc 285 |||||||||||||||||||| Sbjct: 591 acagggaggggaggaggcgc 572
>gb|DQ073467.1| Fundulus heteroclitus sex female cytochrome P450 1A (CYP1A) gene, exons 1, 2 and partial cds Length = 1915 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 acagggaggggaggaggcgc 285 |||||||||||||||||||| Sbjct: 369 acagggaggggaggaggcgc 350
>gb|DQ073466.1| Fundulus heteroclitus sex male cytochrome P450 1A (CYP1A) gene, exons 1, 2 and partial cds Length = 2127 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 acagggaggggaggaggcgc 285 |||||||||||||||||||| Sbjct: 583 acagggaggggaggaggcgc 564
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 agggaggggaggaggcgcgggccg 291 |||||||||||||| ||||||||| Sbjct: 16961161 agggaggggaggagccgcgggccg 16961138
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cagggaggggaggaggcgcg 286 |||||||||||||||||||| Sbjct: 28673126 cagggaggggaggaggcgcg 28673145
>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431H09 Length = 166886 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cagggaggggaggaggcgcg 286 |||||||||||||||||||| Sbjct: 56200 cagggaggggaggaggcgcg 56219
>dbj|AP006048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1423D04 Length = 154474 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 agggaggggaggaggcgcgggccg 291 |||||||||||||| ||||||||| Sbjct: 94183 agggaggggaggagccgcgggccg 94160
>dbj|AK066673.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073O14, full insert sequence Length = 2215 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 cagggaggggaggaggcgcg 286 |||||||||||||||||||| Sbjct: 289 cagggaggggaggaggcgcg 270
>dbj|AP002436.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-627G1, complete sequence Length = 173509 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 aaatacaaaacctctgtatatttc 69 ||||||||||||| |||||||||| Sbjct: 73455 aaatacaaaacctgtgtatatttc 73478
>dbj|AP003402.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-661I21, complete sequence Length = 187946 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 aaatacaaaacctctgtatatttc 69 ||||||||||||| |||||||||| Sbjct: 151050 aaatacaaaacctgtgtatatttc 151073
>emb|AM156932.1| Streptomyces steffisburgensis cluster for steffimycin biosynthesis, strain NRRL 3193 Length = 42877 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gagggccacggccacgccga 328 |||||||||||||||||||| Sbjct: 15634 gagggccacggccacgccga 15653 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,535,308 Number of Sequences: 3902068 Number of extensions: 3535308 Number of successful extensions: 70454 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70192 Number of HSP's gapped (non-prelim): 262 length of query: 401 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 379 effective length of database: 17,147,199,772 effective search space: 6498788713588 effective search space used: 6498788713588 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)