Clone Name | rbart09h09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete sequence Length = 131133 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 agcaattatttcaccaaaaa 54 |||||||||||||||||||| Sbjct: 27307 agcaattatttcaccaaaaa 27326
>emb|AL161431.28| Human DNA sequence from clone RP11-54H7 on chromosome 13 Contains the 3' end a novel gene (including KIAA0865) possible ortholog of rat myosin heavy chain Myr 8 (Loc192253) and 2 novel genes, complete sequence Length = 143802 Score = 40.1 bits (20), Expect = 1.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 34 aagcaattatttcaccaaaaaattctgg 61 |||||||||||||||||| |||||||| Sbjct: 116962 aagcaattatttcaccaaggaattctgg 116935
>gb|AC117740.12| Mus musculus chromosome 8, clone RP24-134P12, complete sequence Length = 186401 Score = 38.2 bits (19), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 38 aattatttcaccaaaaaattctg 60 |||||||||| |||||||||||| Sbjct: 173789 aattatttcatcaaaaaattctg 173811
>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence Length = 183648 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 aagcaattatttcaccaaa 52 ||||||||||||||||||| Sbjct: 131210 aagcaattatttcaccaaa 131228
>emb|CR788308.9| Zebrafish DNA sequence from clone DKEY-192K19 in linkage group 3, complete sequence Length = 193615 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 ttatttcaccaaaaaattc 58 ||||||||||||||||||| Sbjct: 101883 ttatttcaccaaaaaattc 101901
>gb|AC110382.3| Mus musculus BAC clone RP24-555I16 from chromosome 12, complete sequence Length = 170164 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 aattatttcaccaaaaaat 56 ||||||||||||||||||| Sbjct: 146971 aattatttcaccaaaaaat 146953
>gb|AC154906.3| Mus musculus BAC clone RP23-344H23 from chromosome 12, complete sequence Length = 205985 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 aattatttcaccaaaaaat 56 ||||||||||||||||||| Sbjct: 75847 aattatttcaccaaaaaat 75829
>emb|AL355977.11| Human DNA sequence from clone RP11-735G18 on chromosome 10, complete sequence Length = 171367 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 aattatttcaccaaaaaat 56 ||||||||||||||||||| Sbjct: 60929 aattatttcaccaaaaaat 60911
>emb|AL353641.9| Human DNA sequence from clone RP11-142P12 on chromosome 9, complete sequence Length = 35009 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 attatttcaccaaaaaatt 57 ||||||||||||||||||| Sbjct: 23742 attatttcaccaaaaaatt 23724
>emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segment 1/7 Length = 349544 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 ttatttcaccaaaaaattc 58 ||||||||||||||||||| Sbjct: 71628 ttatttcaccaaaaaattc 71646
>emb|AJ238740.1|CRO238740 Catharanthus roseus mRNA for AP2-domain DNA-binding protein ORCA2 Length = 905 Score = 38.2 bits (19), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 30 tgcgaagcaattatttcaccaaa 52 ||||||| ||||||||||||||| Sbjct: 189 tgcgaagaaattatttcaccaaa 211
>emb|BX537941.1|HSM806066 Homo sapiens mRNA; cDNA DKFZp686I05118 (from clone DKFZp686I05118) Length = 4900 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 aattatttcaccaaaaaat 56 ||||||||||||||||||| Sbjct: 1889 aattatttcaccaaaaaat 1871
>gb|AC008213.4|AC008213 Drosophila melanogaster, chromosome 3R, region 97B-97B, BAC clone BACR15K06, complete sequence Length = 183370 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 gcccaaacacacaacatgc 32 ||||||||||||||||||| Sbjct: 19993 gcccaaacacacaacatgc 20011
>gb|AC150255.7| Aedes aegypti, clone XX-85K2, complete sequence Length = 164368 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 ttatttcaccaaaaaattc 58 ||||||||||||||||||| Sbjct: 139092 ttatttcaccaaaaaattc 139110
>gb|AC008212.8|AC008212 Drosophila melanogaster, chromosome 3R, region 97A-97B, BAC clone BACR19L21, complete sequence Length = 162876 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 gcccaaacacacaacatgc 32 ||||||||||||||||||| Sbjct: 107039 gcccaaacacacaacatgc 107057
>gb|AC146604.5| Mus musculus BAC clone RP23-306G1 from chromosome 13, complete sequence Length = 213725 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 cccatggaaataacaagac 97 ||||||||||||||||||| Sbjct: 168006 cccatggaaataacaagac 167988
>gb|AC008462.6|AC008462 Homo sapiens chromosome 5 clone CTC-352J10, complete sequence Length = 183591 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 aacaagaccacgtatcacg 108 ||||||||||||||||||| Sbjct: 24565 aacaagaccacgtatcacg 24583
>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence Length = 174210 Score = 38.2 bits (19), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 38 aattatttcaccaaaaaattctg 60 |||||||||| |||||||||||| Sbjct: 80803 aattatttcatcaaaaaattctg 80825
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 ccaaaaaattctggaaata 66 ||||||||||||||||||| Sbjct: 2985353 ccaaaaaattctggaaata 2985371
>gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94 of 118 of the complete sequence Length = 322332 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 gcccaaacacacaacatgc 32 ||||||||||||||||||| Sbjct: 80886 gcccaaacacacaacatgc 80904
>gb|AC134608.3| Mus musculus BAC clone RP23-68H13 from 13, complete sequence Length = 253539 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 cccatggaaataacaagac 97 ||||||||||||||||||| Sbjct: 106829 cccatggaaataacaagac 106811
>emb|AL929178.7| Mouse DNA sequence from clone RP23-77M17 on chromosome 2, complete sequence Length = 100057 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 caattatttcaccaaaaaa 55 ||||||||||||||||||| Sbjct: 12376 caattatttcaccaaaaaa 12358
>emb|AL732571.8| Mouse DNA sequence from clone RP23-23D11 on chromosome 4, complete sequence Length = 214061 Score = 38.2 bits (19), Expect = 5.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 agaggggaacatggcccaa 19 ||||||||||||||||||| Sbjct: 50416 agaggggaacatggcccaa 50434 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,000,370 Number of Sequences: 3902068 Number of extensions: 1000370 Number of successful extensions: 75479 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75393 Number of HSP's gapped (non-prelim): 86 length of query: 123 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 102 effective length of database: 17,151,101,840 effective search space: 1749412387680 effective search space used: 1749412387680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)