ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete ... 40 1.4
2emb|AL161431.28| Human DNA sequence from clone RP11-54H7 on chro... 40 1.4
3gb|AC117740.12| Mus musculus chromosome 8, clone RP24-134P12, co... 38 5.7
4gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124... 38 5.7
5emb|CR788308.9| Zebrafish DNA sequence from clone DKEY-192K19 in... 38 5.7
6gb|AC110382.3| Mus musculus BAC clone RP24-555I16 from chromosom... 38 5.7
7gb|AC154906.3| Mus musculus BAC clone RP23-344H23 from chromosom... 38 5.7
8emb|AL355977.11| Human DNA sequence from clone RP11-735G18 on ch... 38 5.7
9emb|AL353641.9| Human DNA sequence from clone RP11-142P12 on chr... 38 5.7
10emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segme... 38 5.7
11emb|AJ238740.1|CRO238740 Catharanthus roseus mRNA for AP2-domain... 38 5.7
12emb|BX537941.1|HSM806066 Homo sapiens mRNA; cDNA DKFZp686I05118 ... 38 5.7
13gb|AC008213.4|AC008213 Drosophila melanogaster, chromosome 3R, r... 38 5.7
14gb|AC150255.7| Aedes aegypti, clone XX-85K2, complete sequence 38 5.7
15gb|AC008212.8|AC008212 Drosophila melanogaster, chromosome 3R, r... 38 5.7
16gb|AC146604.5| Mus musculus BAC clone RP23-306G1 from chromosome... 38 5.7
17gb|AC008462.6|AC008462 Homo sapiens chromosome 5 clone CTC-352J1... 38 5.7
18gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, com... 38 5.7
19dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 38 5.7
20gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94... 38 5.7
21gb|AC134608.3| Mus musculus BAC clone RP23-68H13 from 13, comple... 38 5.7
22emb|AL929178.7| Mouse DNA sequence from clone RP23-77M17 on chro... 38 5.7
23emb|AL732571.8| Mouse DNA sequence from clone RP23-23D11 on chro... 38 5.7

>gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete sequence
          Length = 131133

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    agcaattatttcaccaaaaa 54
             ||||||||||||||||||||
Sbjct: 27307 agcaattatttcaccaaaaa 27326



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>emb|AL161431.28| Human DNA sequence from clone RP11-54H7 on chromosome 13 Contains the 3'
              end a novel gene (including KIAA0865) possible ortholog of
              rat myosin heavy chain Myr 8 (Loc192253) and 2 novel genes,
              complete sequence
          Length = 143802

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 34     aagcaattatttcaccaaaaaattctgg 61
              ||||||||||||||||||  ||||||||
Sbjct: 116962 aagcaattatttcaccaaggaattctgg 116935



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>gb|AC117740.12| Mus musculus chromosome 8, clone RP24-134P12, complete sequence
          Length = 186401

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 38     aattatttcaccaaaaaattctg 60
              |||||||||| ||||||||||||
Sbjct: 173789 aattatttcatcaaaaaattctg 173811



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>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4,
              complete sequence
          Length = 183648

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 34     aagcaattatttcaccaaa 52
              |||||||||||||||||||
Sbjct: 131210 aagcaattatttcaccaaa 131228



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>emb|CR788308.9| Zebrafish DNA sequence from clone DKEY-192K19 in linkage group 3,
              complete sequence
          Length = 193615

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     ttatttcaccaaaaaattc 58
              |||||||||||||||||||
Sbjct: 101883 ttatttcaccaaaaaattc 101901



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>gb|AC110382.3| Mus musculus BAC clone RP24-555I16 from chromosome 12, complete sequence
          Length = 170164

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 38     aattatttcaccaaaaaat 56
              |||||||||||||||||||
Sbjct: 146971 aattatttcaccaaaaaat 146953



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>gb|AC154906.3| Mus musculus BAC clone RP23-344H23 from chromosome 12, complete
             sequence
          Length = 205985

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    aattatttcaccaaaaaat 56
             |||||||||||||||||||
Sbjct: 75847 aattatttcaccaaaaaat 75829



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>emb|AL355977.11| Human DNA sequence from clone RP11-735G18 on chromosome 10, complete
             sequence
          Length = 171367

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    aattatttcaccaaaaaat 56
             |||||||||||||||||||
Sbjct: 60929 aattatttcaccaaaaaat 60911



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>emb|AL353641.9| Human DNA sequence from clone RP11-142P12 on chromosome 9, complete
             sequence
          Length = 35009

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    attatttcaccaaaaaatt 57
             |||||||||||||||||||
Sbjct: 23742 attatttcaccaaaaaatt 23724



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>emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segment 1/7
          Length = 349544

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    ttatttcaccaaaaaattc 58
             |||||||||||||||||||
Sbjct: 71628 ttatttcaccaaaaaattc 71646



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>emb|AJ238740.1|CRO238740 Catharanthus roseus mRNA for AP2-domain DNA-binding protein ORCA2
          Length = 905

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 30  tgcgaagcaattatttcaccaaa 52
           ||||||| |||||||||||||||
Sbjct: 189 tgcgaagaaattatttcaccaaa 211



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>emb|BX537941.1|HSM806066 Homo sapiens mRNA; cDNA DKFZp686I05118 (from clone DKFZp686I05118)
          Length = 4900

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 38   aattatttcaccaaaaaat 56
            |||||||||||||||||||
Sbjct: 1889 aattatttcaccaaaaaat 1871



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>gb|AC008213.4|AC008213 Drosophila melanogaster, chromosome 3R, region 97B-97B, BAC clone
             BACR15K06, complete sequence
          Length = 183370

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    gcccaaacacacaacatgc 32
             |||||||||||||||||||
Sbjct: 19993 gcccaaacacacaacatgc 20011



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>gb|AC150255.7| Aedes aegypti, clone XX-85K2, complete sequence
          Length = 164368

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     ttatttcaccaaaaaattc 58
              |||||||||||||||||||
Sbjct: 139092 ttatttcaccaaaaaattc 139110



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>gb|AC008212.8|AC008212 Drosophila melanogaster, chromosome 3R, region 97A-97B, BAC clone
              BACR19L21, complete sequence
          Length = 162876

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 14     gcccaaacacacaacatgc 32
              |||||||||||||||||||
Sbjct: 107039 gcccaaacacacaacatgc 107057



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>gb|AC146604.5| Mus musculus BAC clone RP23-306G1 from chromosome 13, complete sequence
          Length = 213725

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 79     cccatggaaataacaagac 97
              |||||||||||||||||||
Sbjct: 168006 cccatggaaataacaagac 167988



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>gb|AC008462.6|AC008462 Homo sapiens chromosome 5 clone CTC-352J10, complete sequence
          Length = 183591

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 90    aacaagaccacgtatcacg 108
             |||||||||||||||||||
Sbjct: 24565 aacaagaccacgtatcacg 24583



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>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence
          Length = 174210

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 38    aattatttcaccaaaaaattctg 60
             |||||||||| ||||||||||||
Sbjct: 80803 aattatttcatcaaaaaattctg 80825



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 48      ccaaaaaattctggaaata 66
               |||||||||||||||||||
Sbjct: 2985353 ccaaaaaattctggaaata 2985371



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>gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94 of 118 of the
             complete sequence
          Length = 322332

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    gcccaaacacacaacatgc 32
             |||||||||||||||||||
Sbjct: 80886 gcccaaacacacaacatgc 80904



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>gb|AC134608.3| Mus musculus BAC clone RP23-68H13 from 13, complete sequence
          Length = 253539

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 79     cccatggaaataacaagac 97
              |||||||||||||||||||
Sbjct: 106829 cccatggaaataacaagac 106811



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>emb|AL929178.7| Mouse DNA sequence from clone RP23-77M17 on chromosome 2, complete
             sequence
          Length = 100057

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    caattatttcaccaaaaaa 55
             |||||||||||||||||||
Sbjct: 12376 caattatttcaccaaaaaa 12358



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>emb|AL732571.8| Mouse DNA sequence from clone RP23-23D11 on chromosome 4, complete
             sequence
          Length = 214061

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     agaggggaacatggcccaa 19
             |||||||||||||||||||
Sbjct: 50416 agaggggaacatggcccaa 50434


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,000,370
Number of Sequences: 3902068
Number of extensions: 1000370
Number of successful extensions: 75479
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75393
Number of HSP's gapped (non-prelim): 86
length of query: 123
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 102
effective length of database: 17,151,101,840
effective search space: 1749412387680
effective search space used: 1749412387680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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