ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart09g11 |
|---|---|
| Clone Library Name | barley_pub |
>IMMT_MOUSE (Q8CAQ8) Mitochondrial inner membrane protein (Mitofilin)| Length = 757 Score = 32.0 bits (71), Expect = 0.93 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = -2 Query: 303 PCRPCRHYSTTSLVHLSLSNYPG*GELI--GTVNRGVFVRAWSSH 175 P RPCR YST+S L+ G G L G + + W SH Sbjct: 26 PLRPCRRYSTSSSSGLTAGKIAGAGLLFVGGGIGGTILYAKWDSH 70
>IMMT_HUMAN (Q16891) Mitochondrial inner membrane protein (Mitofilin) (p87/89)| (Proliferation-inducing gene 4 protein) Length = 758 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Frame = -2 Query: 303 PCRPCRHYSTTSLVHLSLSNYPG*GELI--GTVNRGVFVRAWSSH 175 P RPCR YST+ L+ G G L G + + W SH Sbjct: 26 PLRPCRRYSTSGSSGLTTGKIAGAGLLFVGGGIGGTILYAKWDSH 70
>TUB_HUMAN (P50607) Tubby protein homolog| Length = 506 Score = 29.6 bits (65), Expect = 4.6 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -3 Query: 485 SFTCDLNDNIAAPWSPSLQASASTCNKSAAAPGPTIPERPAATSAQN 345 S + LN N PS S + ++A+AP PT PE+P Q+ Sbjct: 208 SSSSQLNSNTR----PSSATSRKSVREAASAPSPTAPEQPVDVEVQD 250
>IF2G_SPIVO (O36041) Eukaryotic translation initiation factor 2 gamma subunit| (eIF-2-gamma) (Fragment) Length = 210 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = -2 Query: 366 CGNVGAERCQPQQAGA*PSRLPCRPCRHYSTTSLVHLSLSNYPG*GELIGTVNRGV 199 C + A + Q + P + PC C+ T L H+S+ + PG + + T+ GV Sbjct: 45 CKDCAAPKNYFSQKSSSPDQPPCPTCKGTHTQLLRHISIIDCPGHHDYMTTMLSGV 100
>Y4XL_RHISN (P55704) Hypothetical protein y4xL| Length = 338 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/29 (48%), Positives = 14/29 (48%) Frame = -2 Query: 378 PREACGNVGAERCQPQQAGA*PSRLPCRP 292 PRE VG R P QAG PS P P Sbjct: 119 PREGSWQVGPSRSGPSQAGLSPSATPLNP 147
>NUCC_MESVI (Q9MUL0) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 391 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 304 QTARLSSSLLWLTPFCADVAA 366 + +R++S LLWL PF AD+ A Sbjct: 105 ELSRIASHLLWLGPFMADIGA 125
>NUCC_CHAGL (Q8M9T5) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 391 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 304 QTARLSSSLLWLTPFCADVAA 366 + +R++S LLWL PF AD+ A Sbjct: 105 ELSRIASHLLWLGPFMADIGA 125
>NUCC_ADICA (Q85FG9) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 394 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 304 QTARLSSSLLWLTPFCADVAA 366 + +R++S LLWL PF AD+ A Sbjct: 107 ELSRIASHLLWLGPFLADIGA 127
>NUCC_TOBAC (P12133) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 393 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 304 QTARLSSSLLWLTPFCADVAA 366 + +R++S LLWL PF AD+ A Sbjct: 107 ELSRIASHLLWLGPFMADIGA 127
>NUCC_SPIOL (Q9M3I5) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 393 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 304 QTARLSSSLLWLTPFCADVAA 366 + +R++S LLWL PF AD+ A Sbjct: 107 ELSRIASHLLWLGPFMADIGA 127
>NUCC_PSINU (Q8WHX3) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 393 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 304 QTARLSSSLLWLTPFCADVAA 366 + +R++S LLWL PF AD+ A Sbjct: 107 ELSRIASHLLWLGPFMADIGA 127
>NUCC_OENHO (Q9MTH6) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 393 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 304 QTARLSSSLLWLTPFCADVAA 366 + +R++S LLWL PF AD+ A Sbjct: 107 ELSRIASHLLWLGPFMADIGA 127
>NUCC_LOTJA (Q9BBN8) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 393 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 304 QTARLSSSLLWLTPFCADVAA 366 + +R++S LLWL PF AD+ A Sbjct: 107 ELSRIASHLLWLGPFMADIGA 127
>NUCC_ARATH (P56753) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 393 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 304 QTARLSSSLLWLTPFCADVAA 366 + +R++S LLWL PF AD+ A Sbjct: 107 ELSRIASHLLWLGPFMADIGA 127
>NUCC_ANTFO (Q85UU0) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 393 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 304 QTARLSSSLLWLTPFCADVAA 366 + +R++S LLWL PF AD+ A Sbjct: 107 ELSRIASHLLWLGPFMADIGA 127
>PILQ_NEIMB (Q70M91) Type IV pilus biogenesis and competence protein pilQ| precursor Length = 769 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -3 Query: 461 NIAAPWSPSLQASASTCNKSAAAPGPTIPERPAATSA 351 +++AP+SP+ Q +A++ + AAAP PA A Sbjct: 183 SVSAPFSPAKQQAAASAKQQAAAPAKQQAAAPAKQQA 219
>NUCC_MARPO (P12131) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 392 Score = 28.9 bits (63), Expect = 7.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 304 QTARLSSSLLWLTPFCADVAA 366 + +R++S LLWL PF AD+ A Sbjct: 106 ELSRIASHLLWLGPFMADIGA 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,074,836 Number of Sequences: 219361 Number of extensions: 1136444 Number of successful extensions: 3181 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3010 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3180 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
