ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart09g11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476359.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1859 Score = 101 bits (51), Expect = 2e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 403 gatttattgcatgtcgaagccgatgcttgcaaagaaggcgaccatggggcagctatgtta 462 ||||||||||||| |||| ||||||||||| ||||| | |||||||||||| || ||| Sbjct: 1357 gatttattgcatgaagaagacgatgcttgcatagaagatggccatggggcagcaatatta 1298 Query: 463 tcattcagatcacatgtgaaactaatcccag 493 ||||||||||| ||||||||||||||||||| Sbjct: 1297 tcattcagatcgcatgtgaaactaatcccag 1267 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 312 taggctaagctccagcctgttgtggttgacaccgttctgcgccgacgttgccgcaggcct 371 ||||||||||||||| ||||| ||||||||||| || || ||||| || || ||||| || Sbjct: 1433 taggctaagctccagtctgttctggttgacaccattttgtgccgatgtcgcagcaggtct 1374 Query: 372 ctctgg 377 |||||| Sbjct: 1373 ctctgg 1368 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 192 gcacaaaaactccgcggttcacagttccaatcagctc 228 ||||||||||||||| ||| ||| ||||||||||||| Sbjct: 1552 gcacaaaaactccgcagttgacaattccaatcagctc 1516
>ref|XM_506131.1| PREDICTED Oryza sativa (japonica cultivar-group), B1026C12.31-2 mRNA Length = 1870 Score = 101 bits (51), Expect = 2e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 403 gatttattgcatgtcgaagccgatgcttgcaaagaaggcgaccatggggcagctatgtta 462 ||||||||||||| |||| ||||||||||| ||||| | |||||||||||| || ||| Sbjct: 1368 gatttattgcatgaagaagacgatgcttgcatagaagatggccatggggcagcaatatta 1309 Query: 463 tcattcagatcacatgtgaaactaatcccag 493 ||||||||||| ||||||||||||||||||| Sbjct: 1308 tcattcagatcgcatgtgaaactaatcccag 1278 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 312 taggctaagctccagcctgttgtggttgacaccgttctgcgccgacgttgccgcaggcct 371 ||||||||||||||| ||||| ||||||||||| || || ||||| || || ||||| || Sbjct: 1444 taggctaagctccagtctgttctggttgacaccattttgtgccgatgtcgcagcaggtct 1385 Query: 372 ctctgg 377 |||||| Sbjct: 1384 ctctgg 1379 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 192 gcacaaaaactccgcggttcacagttccaatcagctc 228 ||||||||||||||| ||| ||| ||||||||||||| Sbjct: 1563 gcacaaaaactccgcagttgacaattccaatcagctc 1527
>dbj|AK101907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071E12, full insert sequence Length = 1871 Score = 101 bits (51), Expect = 2e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 403 gatttattgcatgtcgaagccgatgcttgcaaagaaggcgaccatggggcagctatgtta 462 ||||||||||||| |||| ||||||||||| ||||| | |||||||||||| || ||| Sbjct: 1369 gatttattgcatgaagaagacgatgcttgcatagaagatggccatggggcagcaatatta 1310 Query: 463 tcattcagatcacatgtgaaactaatcccag 493 ||||||||||| ||||||||||||||||||| Sbjct: 1309 tcattcagatcgcatgtgaaactaatcccag 1279 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 312 taggctaagctccagcctgttgtggttgacaccgttctgcgccgacgttgccgcaggcct 371 ||||||||||||||| ||||| ||||||||||| || || ||||| || || ||||| || Sbjct: 1445 taggctaagctccagtctgttctggttgacaccattttgtgccgatgtcgcagcaggtct 1386 Query: 372 ctctgg 377 |||||| Sbjct: 1385 ctctgg 1380 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 192 gcacaaaaactccgcggttcacagttccaatcagctc 228 ||||||||||||||| ||| ||| ||||||||||||| Sbjct: 1564 gcacaaaaactccgcagttgacaattccaatcagctc 1528
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 99.6 bits (50), Expect = 8e-18 Identities = 80/90 (88%) Strand = Plus / Plus Query: 404 atttattgcatgtcgaagccgatgcttgcaaagaaggcgaccatggggcagctatgttat 463 |||||||||||| |||| ||||||||||| ||||| | |||||||||||| || |||| Sbjct: 134513 atttattgcatgaagaagacgatgcttgcatagaagatggccatggggcagcaatattat 134572 Query: 464 cattcagatcacatgtgaaactaatcccag 493 |||||||||| ||||||||||||||||||| Sbjct: 134573 cattcagatcgcatgtgaaactaatcccag 134602 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 312 taggctaagctccagcctgttgtggttgacacc 344 ||||||||||||||| ||||| ||||||||||| Sbjct: 133597 taggctaagctccagtctgttctggttgacacc 133629 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 192 gcacaaaaactccgcggttcacagttccaatcagctc 228 ||||||||||||||| ||| ||| ||||||||||||| Sbjct: 133478 gcacaaaaactccgcagttgacaattccaatcagctc 133514
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 99.6 bits (50), Expect = 8e-18 Identities = 80/90 (88%) Strand = Plus / Plus Query: 404 atttattgcatgtcgaagccgatgcttgcaaagaaggcgaccatggggcagctatgttat 463 |||||||||||| |||| ||||||||||| ||||| | |||||||||||| || |||| Sbjct: 133812 atttattgcatgaagaagacgatgcttgcatagaagatggccatggggcagcaatattat 133871 Query: 464 cattcagatcacatgtgaaactaatcccag 493 |||||||||| ||||||||||||||||||| Sbjct: 133872 cattcagatcgcatgtgaaactaatcccag 133901 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 312 taggctaagctccagcctgttgtggttgacacc 344 ||||||||||||||| ||||| ||||||||||| Sbjct: 132896 taggctaagctccagtctgttctggttgacacc 132928 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 192 gcacaaaaactccgcggttcacagttccaatcagctc 228 ||||||||||||||| ||| ||| ||||||||||||| Sbjct: 132777 gcacaaaaactccgcagttgacaattccaatcagctc 132813
>gb|AY106945.1| Zea mays PCO116162 mRNA sequence Length = 535 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 444 ccatggggcagctatgttatcattcagatcacatgtgaaactaatcccag 493 ||||||||| || ||||| ||||||||||| |||||||| |||||||||| Sbjct: 319 ccatggggctgcgatgttgtcattcagatcgcatgtgaagctaatcccag 270
>emb|AL591415.9| Human DNA sequence from clone RP11-520L11 on chromosome 1, complete sequence Length = 110220 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 tcaacctggataatttgacaa 252 ||||||||||||||||||||| Sbjct: 100966 tcaacctggataatttgacaa 100986
>gb|AC013447.4|AC013447 Homo sapiens BAC clone RP11-543D5 from 1, complete sequence Length = 166143 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 tcaacctggataatttgacaa 252 ||||||||||||||||||||| Sbjct: 18599 tcaacctggataatttgacaa 18619
>dbj|AK173760.1| Ciona intestinalis cDNA, clone:citb002h24, full insert sequence Length = 1664 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 acaacaaaatccaagtctatt 23 ||||||||||||||||||||| Sbjct: 850 acaacaaaatccaagtctatt 870
>dbj|AK173535.1| Ciona intestinalis cDNA, clone:cicl007p14, full insert sequence Length = 2427 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 acaacaaaatccaagtctatt 23 ||||||||||||||||||||| Sbjct: 850 acaacaaaatccaagtctatt 870
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1670367 gctttgatgcgatgaccaag 1670386
>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome Length = 1899877 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1723197 gctttgatgcgatgaccaag 1723216
>gb|AE006623.1| Streptococcus pyogenes M1 GAS, section 152 of 167 of the complete genome Length = 10825 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1686 gctttgatgcgatgaccaag 1705
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1758097 gctttgatgcgatgaccaag 1758116
>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome Length = 1860355 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1690303 gctttgatgcgatgaccaag 1690322
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1729304 gctttgatgcgatgaccaag 1729323
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1666419 gctttgatgcgatgaccaag 1666438
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1296540 gctttgatgcgatgaccaag 1296559
>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome Length = 1897573 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1700712 gctttgatgcgatgaccaag 1700731
>gb|BC093515.1| Mus musculus cDNA clone IMAGE:5132838, **** WARNING: chimeric clone **** Length = 2879 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ctatggccctcctttctcac 60 |||||||||||||||||||| Sbjct: 1573 ctatggccctcctttctcac 1592
>gb|AE014248.1| Streptococcus agalactiae 2603V/R section 58 of 100 of the complete genome Length = 21414 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 8482 gctttgatgcgatgaccaag 8501
>emb|AL766850.1|SAG766850 Streptococcus agalactiae NEM316 complete genome, segment 8 Length = 199050 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 36318 gctttgatgcgatgaccaag 36337
>emb|BX664751.9| Zebrafish DNA sequence from clone CH211-61F14 in linkage group 2, complete sequence Length = 106773 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ttctctgtcattctgtggct 137 |||||||||||||||||||| Sbjct: 3472 ttctctgtcattctgtggct 3453
>emb|CR589880.3| Mouse DNA sequence from clone RP23-10A18 on chromosome 4, complete sequence Length = 40133 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 ctatggccctcctttctcac 60 |||||||||||||||||||| Sbjct: 20384 ctatggccctcctttctcac 20365
>emb|CR591210.1| full-length cDNA clone CS0DF006YI11 of Fetal brain of Homo sapiens (human) Length = 2303 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 ttctgtggcttacaacaaattaac 151 |||||||||||||||||| ||||| Sbjct: 599 ttctgtggcttacaacaatttaac 622
>gb|AC098649.2| Homo sapiens chromosome 3 clone RP11-272D20, complete sequence Length = 204143 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 ttctgtggcttacaacaaattaac 151 |||||||||||||||||| ||||| Sbjct: 28801 ttctgtggcttacaacaatttaac 28778
>gb|AE010110.1| Streptococcus pyogenes strain MGAS8232, section 158 of 173 of the complete genome Length = 10618 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 8305 gctttgatgcgatgaccaag 8324
>ref|XM_940451.1| PREDICTED: Homo sapiens similar to T25G3.1 (LOC651316), mRNA Length = 5170 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 ttctgtggcttacaacaaattaac 151 |||||||||||||||||| ||||| Sbjct: 3436 ttctgtggcttacaacaatttaac 3459
>ref|XM_927468.1| PREDICTED: Homo sapiens similar to T25G3.1 (LOC644295), mRNA Length = 5170 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 ttctgtggcttacaacaaattaac 151 |||||||||||||||||| ||||| Sbjct: 3436 ttctgtggcttacaacaatttaac 3459
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 agctatgttatcattcagat 472 |||||||||||||||||||| Sbjct: 14440026 agctatgttatcattcagat 14440007
>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome Length = 1900521 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1739902 gctttgatgcgatgaccaag 1739921
>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome Length = 1894275 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1733688 gctttgatgcgatgaccaag 1733707
>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025H06 Length = 151547 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 agctatgttatcattcagat 472 |||||||||||||||||||| Sbjct: 101423 agctatgttatcattcagat 101404
>dbj|AB019226.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24M7 Length = 73999 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 actagacttgtagtagaata 282 |||||||||||||||||||| Sbjct: 53080 actagacttgtagtagaata 53061
>gb|AF157502.1|AF157502 Mus musculus telomerase reverse transcriptase (Tert) gene, promoter and partial cds Length = 1255 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gctccagcctgttgtggttgacac 343 ||||||||||| |||||||||||| Sbjct: 374 gctccagcctgctgtggttgacac 351
>gb|AY555142.1| Zea mays BAC clone c573F08, complete sequence Length = 181627 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 aatccaagtctattcaaatt 29 |||||||||||||||||||| Sbjct: 80739 aatccaagtctattcaaatt 80720
>emb|BX465837.11| Zebrafish DNA sequence from clone DKEY-27C15 in linkage group 19, complete sequence Length = 206154 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cataataatagtactgtaat 97 |||||||||||||||||||| Sbjct: 62541 cataataatagtactgtaat 62560
>gb|AF121949.1|AF121949 Mus musculus telomerase reverse transcriptase (Tert) gene, partial cds Length = 7498 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gctccagcctgttgtggttgacac 343 ||||||||||| |||||||||||| Sbjct: 4021 gctccagcctgctgtggttgacac 3998
>emb|AL136298.5|CNS01DW2 Human chromosome 14 DNA sequence BAC R-134E15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181532 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 ttctgtggcttacaacaaattaac 151 |||||||||||||||||| ||||| Sbjct: 131782 ttctgtggcttacaacaatttaac 131805
>gb|AF062533.1|AF062533 Streptococcus agalactiae Lmb (lmb) gene, complete cds; and unknown gene Length = 3501 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 2258 gctttgatgcgatgaccaag 2239
>gb|U66099.1| Streptococcus pyogenes strain CS101 lraI homolog, orf2, orf3, dipeptide permease subunit F-like protein (dppFL), and dipeptide permease subunit D-like protein (dppDL) genes, complete cds; and DppCL (dppCL) gene, partial cds Length = 5873 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 2398 gctttgatgcgatgaccaag 2379
>gb|AC158359.2| Mus musculus BAC clone RP23-412H3 from chromosome 13, complete sequence Length = 210045 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gctccagcctgttgtggttgacac 343 ||||||||||| |||||||||||| Sbjct: 74596 gctccagcctgctgtggttgacac 74573
>emb|AL512308.19| Human DNA sequence from clone RP11-164H16 on chromosome 6, complete sequence Length = 107455 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 ttctgtggcttacaacaaattaac 151 |||||||||||||||||| ||||| Sbjct: 6465 ttctgtggcttacaacaatttaac 6488
>gb|U12201.1|MMU12201 Mus musculus C57Bl/6J group 1 major urinary protein (MUP 25D4) gene, partial cds Length = 1456 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ctatggccctcctttctcac 60 |||||||||||||||||||| Sbjct: 1123 ctatggccctcctttctcac 1142
>emb|AL772327.4| Mouse DNA sequence from clone RP23-241B2 on chromosome 4, complete sequence Length = 222631 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ctatggccctcctttctcac 60 |||||||||||||||||||| Sbjct: 183610 ctatggccctcctttctcac 183629
>dbj|AB032969.1| Homo sapiens mRNA for KIAA1143 protein, partial cds Length = 4946 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 ttctgtggcttacaacaaattaac 151 |||||||||||||||||| ||||| Sbjct: 3216 ttctgtggcttacaacaatttaac 3239
>dbj|AB073859.1| Streptococcus pyogenes htpA gene for histidine triad protein of group A streptococci, complete cds Length = 2478 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gctttgatgcgatgaccaag 188 |||||||||||||||||||| Sbjct: 1232 gctttgatgcgatgaccaag 1213 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,854,626 Number of Sequences: 3902068 Number of extensions: 3854626 Number of successful extensions: 71744 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71583 Number of HSP's gapped (non-prelim): 161 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
