Clone Information

BLAST Search Result

Clone Name	rbart09g10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	LAP4_MOUSE (Q80U72) LAP4 protein (Scribble homolog protein)	33	0.37
2	BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic ch...	33	0.49
3	GPRS_DROME (O61366) Serine-enriched protein	33	0.49
4	FMT_NOCFA (Q5YTN5) Methionyl-tRNA formyltransferase (EC 2.1.2.9)	33	0.49
5	HMW3_MYCPN (Q50360) Cytadherence high molecular weight protein 3...	33	0.49
6	INVO_SAGOE (P24712) Involucrin	32	0.83
7	GRAP1_HUMAN (Q4V328) GRIP1-associated protein 1 (GRASP-1)	32	1.1
8	ARNT_RABIT (O02748) Aryl hydrocarbon receptor nuclear translocat...	32	1.1
9	BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot...	31	1.9
10	JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation...	31	1.9
11	MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)	31	1.9
12	INVO_HUMAN (P07476) Involucrin	31	1.9
13	INVO_PONPY (P14708) Involucrin	31	1.9
14	BFR2_SCHPO (Q9US05) Protein bfr2	31	1.9
15	SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor	31	1.9
16	POLLU_LOTJA (Q5H8A5) Putative ion channel POLLUX, chloroplast pr...	31	2.4
17	INVO_PANPA (P14591) Involucrin	31	2.4
18	AAKG2_MOUSE (Q91WG5) 5'-AMP-activated protein kinase, gamma-2 su...	31	2.4
19	VPHE_NPVAC (P24728) Polyhedral envelope protein (PE) (Polyhedral...	31	2.4
20	NUSA_MYCPN (P75591) Transcription elongation protein nusA	30	3.2
21	MDM36_YEAST (Q06820) Mitochondrial distribution and morphology p...	30	4.1
22	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	30	4.1
23	NHL1_CAEEL (Q03601) RING finger protein nhl-1	30	4.1
24	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	30	4.1
25	NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified i...	30	5.4
26	NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleo...	30	5.4
27	MUC1_YEAST (P08640) Mucin-like protein 1 precursor	30	5.4
28	GBF1_ARATH (P42774) G-box-binding factor 1 (AtbZIP41)	30	5.4
29	OCLN_CHICK (Q91049) Occludin	30	5.4
30	LPA_BPP1 (Q06260) Late promoter-activating protein (Gp10)	30	5.4
31	ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)	30	5.4
32	STXB5_MOUSE (Q8K400) Syntaxin-binding protein 5 (Tomosyn-1) (Let...	29	7.1
33	Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 in...	29	7.1
34	FA47B_HUMAN (Q8NA70) Protein FAM47B	29	7.1
35	YM52_YEAST (Q04322) Hypothetical 82.1 kDa protein in SGS1-MRPL24...	29	7.1
36	YHL1_EBV (P03181) Hypothetical protein BHLF1	29	7.1
37	PCX_DROME (P18490) Protein pecanex	29	9.2
38	KAS2_STRGA (P16539) Tetracenomycin C polyketide putative beta-ke...	29	9.2
39	HUS1_HUMAN (O60921) Checkpoint protein HUS1 (hHUS1)	29	9.2
40	YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear pro...	29	9.2
41	ARNT_HUMAN (P27540) Aryl hydrocarbon receptor nuclear translocat...	29	9.2
42	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	29	9.2
43	NFM_CHICK (P16053) Neurofilament triplet M protein (160 kDa neur...	29	9.2
44	SLA2_YEAST (P33338) Protein SLA2 (Transmembrane protein MOP2)	29	9.2
45	ANFG_CLOPA (Q46244) Nitrogenase iron-iron protein delta chain (E...	29	9.2

>LAP4_MOUSE (Q80U72) LAP4 protein (Scribble homolog protein)|
          Length = 1612

 Score = 33.5 bits (75), Expect = 0.37
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -2

Query: 512  AIAARPTATVVPPIKTNTTIRTPSPIPPVAVESPVERPRQKRFD-TAPLNSRESAPRRES 336
            A AA PT  V PP   N+  + P+P P  + E    R RQK F+    +   E  P+R S
Sbjct: 1306 AFAAVPT--VHPP--ENSATQPPTPGPAASPEQLSFRERQKYFELEVRVPQAEGPPKRVS 1361

Query: 335  STLQDELDMLQEE 297
                D+L  +QEE
Sbjct: 1362 LVGADDLRKMQEE 1374

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>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
           chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = -2

Query: 509 IAARPTATVVPPIKTNTTIRTPSPIP--PVAVESPVERPRQKR-----FDTAPLNSRESA 351
           IA  P  T+VPP      ++TPSP+P  P    +PV +P Q           P+ +++  
Sbjct: 234 IAQPPVMTMVPP----QPLQTPSPVPPQPPPPPAPVPQPVQSHPPIIATTPQPVKTKKGV 289

Query: 350 PRRESSTLQDELDMLQE 300
            R+  +T    +D + E
Sbjct: 290 KRKADTTTPTTIDPIHE 306

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>GPRS_DROME (O61366) Serine-enriched protein|
          Length = 1302

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = -2

Query: 500 RPTATVVPPIKTNTTIRTP-SPIPPVAVESPVE----RPRQKRFDTAPLNSRESAPRRES 336
           RP+ ++  PI   +  R+P  PIPP+ V +P E      R++    A    +E    +E+
Sbjct: 554 RPSISLFTPIYFASEKRSPMGPIPPITVSNPAETYKSAEREREAAEAAAREKEKEKEKEA 613

Query: 335 STLQDELDMLQE 300
           +  Q++  +++E
Sbjct: 614 AQPQEKKSVMRE 625

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>FMT_NOCFA (Q5YTN5) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 307

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 466 PTLPSEPRLLSHLWLWSPQWSALDRKGLIQPHLTLESQRHGESHLHFKM 320
           P  P+EP  L  L   +P    +   G + P   L+  RHG  +LHF +
Sbjct: 63  PRTPAEPEFLDRLTELAPDCCPVVAYGALLPQAALDIPRHGWINLHFSL 111

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>HMW3_MYCPN (Q50360) Cytadherence high molecular weight protein 3 (Cytadherence|
           accessory protein 3) (Accessory adhesin protein 3)
          Length = 672

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 509 IAARPTATVVPPIKTNTTIRTPSPIPPVAVESPVERPR 396
           +  +PTA V P +K    + TP+P P V V   V  P+
Sbjct: 403 VVVQPTAVVQPVVKAEPKVVTPTPAPQVVVTPQVATPK 440

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>INVO_SAGOE (P24712) Involucrin|
          Length = 493

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -2

Query: 512 AIAARPTATVVPPIKTNTTIRT-PSPIPPVAVESPVERPRQ--KRFDTAPLNSRESAPRR 342
           A++ +   TV PP+ T    R  P+P+PP   + PVE P +   + +   +   +  P +
Sbjct: 14  ALSQKLLDTVPPPVNTQQEQRKQPAPLPPPCQKVPVELPVEVLSKHEEKHMTIVKGVPEQ 73

Query: 341 ESSTLQDELDMLQEEN 294
           E    Q +   LQ+++
Sbjct: 74  ECEQQQPQEQELQQQH 89

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>GRAP1_HUMAN (Q4V328) GRIP1-associated protein 1 (GRASP-1)|
          Length = 841

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -2

Query: 479 PPIKTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPLNSRESAPRRESSTLQDELDMLQE 300
           PP     T+  P P+  V ++  +E+  +KR     L   ES+ + E+S LQ+EL  L E
Sbjct: 175 PPGGPAPTVLAPMPLAEVELKWEMEK-EEKRLLWEQLQGLESSKQAETSRLQEELAKLSE 233

Query: 299 E 297
           +
Sbjct: 234 K 234

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>ARNT_RABIT (O02748) Aryl hydrocarbon receptor nuclear translocator (ARNT|
           protein) (Dioxin receptor, nuclear translocator)
           (Hypoxia-inducible factor 1 beta) (HIF-1 beta)
          Length = 790

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -2

Query: 473 IKTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPL--NSRESAPRRESSTLQDELDML 306
           I TNT ++  S  P   + +P++RP+       PL   S + APR++    Q ELDM+
Sbjct: 458 ICTNTNVKNSSQEPRPTLSNPIQRPQLGPTANLPLEVGSGQLAPRQQQQ--QTELDMV 513

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>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
 Frame = -2

Query: 509 IAARPTATVVPPIKTNTTIRTPSPIPPVAVESPVERPRQKR-------FDTAPLNSRESA 351
           I   P  TVVPP      ++TP P+PP     P   P+  +           P+ +++  
Sbjct: 233 IVQTPVMTVVPP----QPLQTPPPVPPQPQPPPAPAPQPVQSHPPIIAATPQPVKTKKGV 288

Query: 350 PRRESSTLQDELDMLQE 300
            R+  +T    +D + E
Sbjct: 289 KRKADTTTPTTIDPIHE 305

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>JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 1407

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
 Frame = -2

Query: 518 TGAIAARPTATVV----PPIKTNTTIRTPSPIPPVA--VESPVERPRQKRFDTAPLNSRE 357
           T A+A  PT T +    P  K+NTT+   S  PP    VE P +RPR +R +++    R 
Sbjct: 91  TIALATSPTFTPLTHRPPSDKSNTTL---SMFPPETEPVERPAKRPRSERDESSYTQHRS 147

Query: 356 SA-----PRRESSTLQDELDML 306
           +A     P   S +++ + ++L
Sbjct: 148 NAFSIARPPAISDSMKTDAELL 169

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>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -2

Query: 497  PTATVVPPIKTNTT-IRTPSPIPPVAVES---PVERPRQKRFDTAPLNSRESAPRRESST 330
            PT T  PPI T TT + T +P PP++  +   P   P       +P  +  S P   ++T
Sbjct: 1434 PTTTPSPPITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTT 1493

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>INVO_HUMAN (P07476) Involucrin|
          Length = 585

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = -2

Query: 512 AIAARPTATVVPPIKTNTT-IRTPSPIPP----VAVESPVERPRQKRFDTAPLNSRESAP 348
           A++     TV PP+ T+   ++ P+P+PP    V VE PVE P ++  +   + + +  P
Sbjct: 14  ALSQELLKTVPPPVNTHQEQMKQPTPLPPPCQKVPVELPVEVPSKQ--EEKHMTAVKGLP 71

Query: 347 RRESSTLQDE 318
            +E    Q E
Sbjct: 72  EQECEQQQKE 81

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>INVO_PONPY (P14708) Involucrin|
          Length = 835

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = -2

Query: 512 AIAARPTATVVPPIKTNTT-IRTPSPIPP----VAVESPVERPRQKRFDTAPLNSRESAP 348
           A++     TV PP+ T    ++ P+P+PP    V VE PVE P ++  +   + + +  P
Sbjct: 14  ALSQELLKTVPPPVNTQQEQMKQPTPLPPPCQKVPVELPVEVPSKQ--EEKHMTAVKGLP 71

Query: 347 RRESSTLQDE 318
            +E    Q E
Sbjct: 72  EQECEQQQQE 81

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>BFR2_SCHPO (Q9US05) Protein bfr2|
          Length = 452

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -2

Query: 398 RQKRFDTAPLNSRESAPRRESSTLQDELDMLQEENES 288
           RQ+  ++  LNS+ S+P  E  + +DE D + E++E+
Sbjct: 76  RQELLNSGSLNSQSSSPSEEEDSEEDENDAVSEDHEN 112

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>SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor|
          Length = 297

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 528 SRKDRRHCSTTDRHSGSTNQNQHYHQNPVSYPTCGCGVPS 409
           +++ +RH +   + S ST +  H+H  P + P  GCG  S
Sbjct: 182 TKRIKRHRTKRTKRSKSTKKIVHHHNRPGTTPESGCGCGS 221

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>POLLU_LOTJA (Q5H8A5) Putative ion channel POLLUX, chloroplast precursor|
          Length = 917

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 467 TNTTIRTPSPIPPVAVESPVERPRQKRFDTAPL 369
           TNT   T  P PPV   SPV RP+     + P+
Sbjct: 130 TNTNTNTDLPPPPVPSSSPVARPQHHNHRSPPI 162

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>INVO_PANPA (P14591) Involucrin|
          Length = 560

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -2

Query: 512 AIAARPTATVVPPIKTNTT-IRTPSPIPPVAVESPVERPRQ--KRFDTAPLNSRESAPRR 342
           A++     TV PP+ T    ++ P+P+PP   + PVE P +   + +   + + +  P +
Sbjct: 14  ALSQELLKTVPPPVNTQQEQMKQPTPLPPPCQKMPVELPVEVPSKQEEKHMTAVKGLPEQ 73

Query: 341 ESSTLQDE 318
           E    Q E
Sbjct: 74  ECEQQQQE 81

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>AAKG2_MOUSE (Q91WG5) 5'-AMP-activated protein kinase, gamma-2 subunit (AMPK|
           gamma-2 chain) (AMPK gamma2)
          Length = 566

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 500 RPTATVVPPIKTNTTIRTPSPIPPVAV-ESPVERPRQKRFD-TAPLNSRESAPRRESST 330
           RP++ V  P++  T+  +P  + P +  ESP   PR+  F      +S+ES+P    ST
Sbjct: 84  RPSSPVSAPVRPKTSPGSPKTVFPFSYQESPPRSPRRMSFSGIFRSSSKESSPNSNPST 142

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>VPHE_NPVAC (P24728) Polyhedral envelope protein (PE) (Polyhedral calyx|
           protein)
          Length = 252

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -2

Query: 470 KTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPLNSRESAPRRESSTLQDELDMLQEENE 291
           ++ +  R+ SP       SP  RPR +    +   SR S+PRR    + D L+ ++ +N+
Sbjct: 105 RSRSRSRSRSPHCRPRSRSPHCRPRSRSRSRSRSRSRSSSPRRGRRQIFDALEKIRHQND 164

Query: 290 SVL 282
            ++
Sbjct: 165 MLM 167

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>NUSA_MYCPN (P75591) Transcription elongation protein nusA|
          Length = 540

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 518 TGAIAARPTATVVPPIKTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPLNSRESAPRRE 339
           T A    P  T V P+    ++ TP PIP V    PV +P+     T   +  ++ P + 
Sbjct: 463 TPAPQPTPAPTKVEPVPPPVSV-TPKPIPKVNKPKPVVKPKSVFSITVEADDSKTKPEKS 521

Query: 338 SS 333
           S+
Sbjct: 522 SA 523

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>MDM36_YEAST (Q06820) Mitochondrial distribution and morphology protein 36|
          Length = 579

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = -2

Query: 494 TATVVPPIKTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPLNSRESAPRRESSTLQDEL 315
           +++V   I  N+T+ +PSP    +  S        R  T PL+   S    +S TL++ +
Sbjct: 466 SSSVSSIISQNSTLASPSPPMSSSFISTAPSQSSSRMSTLPLSPSSSLLESQSQTLKNNM 525

Query: 314 DMLQEENESVLD 279
                ++ S L+
Sbjct: 526 SQWLNQSRSGLN 537

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 452 RTPSPIPPVAVESPVERPRQKRFDTAPLNSRESAPRRESSTLQ 324
           R+PSP PP         P ++R  + P   R  +PRR S  +Q
Sbjct: 573 RSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQ 615

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>NHL1_CAEEL (Q03601) RING finger protein nhl-1|
          Length = 974

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
 Frame = -2

Query: 503 ARPTATVVPPIKTNTTIRTPS--PIPPVAVESPVERPRQKRFDTAPLNS----RESAPRR 342
           +RPT+ +VP  +T  T+   S  P+PP +VE  VER        APL      +   PR+
Sbjct: 447 SRPTSLIVPNTETPRTVSPASKPPLPPQSVER-VERTEDA--SPAPLPQLPIRKPPLPRQ 503

Query: 341 ESSTLQDELDMLQEENESV 285
           +SS      D L E+ E++
Sbjct: 504 QSS----NDDSLNEKVETI 518

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 452 RTPSPIPPVAVESPVERPRQKRFDTAPLNSRESAPRRESSTLQ 324
           R+PSP PP         P ++R  + P   R  +PRR S  +Q
Sbjct: 559 RSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQ 601

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>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer|
            protein 3) (Cancer-amplified transcriptional coactivator
            ASC-2) (Activating signal cointegrator 2) (ASC-2)
            (Peroxisome proliferator-activated receptor-interacting
            protein) (P
          Length = 2063

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 503  ARPTATVVPPIKTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPL--NSRESAP 348
            ++P+     P+ TN+ +  PS    VAV  P+  P+  +F +AP+  N+  S+P
Sbjct: 1673 SQPSTIPAAPLTTNSGLMPPS----VAVVGPLHIPQNIKFSSAPVPPNALSSSP 1722

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>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (DNup214)
          Length = 1711

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -2

Query: 497  PTATVVPPIKTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPL----NSRESAPRRESST 330
            PT  V P  +   T+  P P P  ++ S VE+P      T P+    +  +S P  ++ST
Sbjct: 908  PTPAVAPMPQATVTVAPPLPKPMPSIPSVVEKPGVPTHPTTPVATPFSFSQSIPFVKTST 967

Query: 329  L 327
            +
Sbjct: 968  V 968

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>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = -2

Query: 494 TATVVPPIKTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPLNSRES 354
           ++T  P   T T+     P PP       E+P     DT P   +++
Sbjct: 254 SSTTAPATPTTTSCTKEKPTPPTTTSCTKEKPTPPHHDTTPCTKKKT 300

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>GBF1_ARATH (P42774) G-box-binding factor 1 (AtbZIP41)|
          Length = 315

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
 Frame = -2

Query: 530 SAGRTGAIAAR-PTATVVPPIKTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPLNSRES 354
           S   TG I    P   V P    N  +   S    V V+   E  RQKR  +   ++R S
Sbjct: 180 SQSTTGEIQGSVPMKPVAPGTNLNIGMDLWSSQAGVPVKDERELKRQKRKQSNRESARRS 239

Query: 353 APRR--ESSTLQDELDMLQEENESVLD 279
             R+  E   LQ  ++ L  EN+S+ D
Sbjct: 240 RLRKQAECEQLQQRVESLSNENQSLRD 266

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>OCLN_CHICK (Q91049) Occludin|
          Length = 504

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 177 SPLEQEGSGVEQWTRPDSDGACVAD 103
           +P+ QEG  VE+W +  +DGA V D
Sbjct: 268 APVVQEGPDVEEWVKNVADGASVQD 292

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>LPA_BPP1 (Q06260) Late promoter-activating protein (Gp10)|
          Length = 150

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -2

Query: 398 RQKRFDTAPLNS----RESAPRRESSTLQDELDMLQEENE 291
           R +RF    LN     R  APRR    LQ+EL M Q+E E
Sbjct: 79  RPRRFQIHSLNPEFFRRSRAPRRFDEKLQNELYMTQDEKE 118

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>ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)|
          Length = 1687

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
 Frame = -2

Query: 497  PTATV----VPPIKTNTTIRTPS-----PIPPVAVESPVERPRQKRFDTAP 372
            P ATV    VPP   +     P      P+PP    SP E P++   D  P
Sbjct: 955  PLATVSGSPVPPAGNSLPTEAPKKHCFDPVPPAGNSSPTEAPKKHHLDPVP 1005



 Score = 25.4 bits (54), Expect(2) = 8.0
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
 Frame = -2

Query: 482  VPPIKTNTTIRTPS-----PIPPVAVESPVERPRQKRFD 381
            VPP   ++    P      P+PP    SP E  ++ RF+
Sbjct: 984  VPPAGNSSPTEAPKKHHLDPVPPAGNSSPTEALKKHRFE 1022



 Score = 21.9 bits (45), Expect(2) = 8.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 395  QKRFDTAPLNSRESAPRRESST 330
            Q + D +PL++ +SAP +  ST
Sbjct: 1063 QTQPDVSPLSNGDSAPPKNGST 1084

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>STXB5_MOUSE (Q8K400) Syntaxin-binding protein 5 (Tomosyn-1) (Lethal(2) giant|
           larvae protein homolog 3)
          Length = 1152

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -2

Query: 497 PTATVVPPIKTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPLNSRESAPRRESSTLQDE 318
           P     PP+ T      P PIPP +  S          D  P    +++P ++S   Q E
Sbjct: 558 PEGEQPPPLSTPVGSSNPQPIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTE 617

Query: 317 L 315
           L
Sbjct: 618 L 618

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>Y091_NPVAC (P41479) Hypothetical 24.1 kDa protein in LEF4-P33 intergenic|
           region
          Length = 224

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -2

Query: 497 PTATVVPPIKTNTTIRTPSPIPPVAVESPVERP 399
           P  T +PP  T T    PSPIPP    SP   P
Sbjct: 80  PPPTPIPPTPTPTP--PPSPIPPTPTPSPPPSP 110

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>FA47B_HUMAN (Q8NA70) Protein FAM47B|
          Length = 645

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 101 KSATQAPSESGRVHCSTPLPSCSRGELLRIPRLREQLPVSQAPS 232
           +  T+ P+ESG+  C     SC R     + RLR QLP +   S
Sbjct: 170 EKTTEVPTESGKYPCG---ESCPRPPETPVSRLRPQLPKTPVSS 210

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>YM52_YEAST (Q04322) Hypothetical 82.1 kDa protein in SGS1-MRPL24 intergenic|
           region
          Length = 720

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -2

Query: 464 NTTIRTPSPIPPVAVESPVERPRQKRFDTAPLNSRESAPRRESSTLQDELDM----LQEE 297
           N++  TP  +PP  +E P++   QK F  +         + E ++++ +LD     L+E+
Sbjct: 196 NSSSSTPPTLPPRRIEDPLDLAAQKHFLASTFKRNMLFYKSEDNSIKCDLDKNILNLKED 255

Query: 296 NESV 285
           ++ +
Sbjct: 256 SKKI 259

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>YHL1_EBV (P03181) Hypothetical protein BHLF1|
          Length = 660

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -1

Query: 504 STTDRHSGSTNQNQHYHQNPVSYPTCGCGVPSGAPSTEKV*YS 376
           S   R +G   Q  H H N    PT GC  P  +P T +  Y+
Sbjct: 87  SRQSRRTGPAEQADHAHSN----PTGGCSDPQRSPRTRQAGYA 125

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>PCX_DROME (P18490) Protein pecanex|
          Length = 3433

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 443  SPIPPVAVESPVERPRQKRFDTAPLNSRESAPRRESSTLQDELDMLQEENESV 285
            SP+  V V  P E+P Q     +P+ +  S+     ST    L   QEE ++V
Sbjct: 3356 SPLEEVTVSKPDEQPAQPTIPASPVPAETSSTSSAKSTSSPSL--CQEEEDAV 3406

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>KAS2_STRGA (P16539) Tetracenomycin C polyketide putative beta-ketoacyl|
           synthase 2 (EC 2.3.1.-)
          Length = 409

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 485 VVPPIKTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPLNSR 360
           VVPP     T+ T +P P + ++  + +PR+ R DTA + +R
Sbjct: 358 VVPP-----TVGTGAPAPGLGIDLVLHQPRELRVDTALVVAR 394

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>HUS1_HUMAN (O60921) Checkpoint protein HUS1 (hHUS1)|
          Length = 280

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -3

Query: 484 WFHQSKPTLPSEPRLLSHLWLWSPQWSALDRKGLIQPHLTLESQRHGESHLHFKMSLICY 305
           W    +P +P +P +  +L +     S +++   I  HL +E+   GE +L  +  L+C 
Sbjct: 143 WKDLQEPVVP-DPDVSIYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCV 201

Query: 304 KRRMK 290
               K
Sbjct: 202 TTHFK 206

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>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
            (ZAP113)
          Length = 1951

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -2

Query: 506  AARPTATVVPPIKTNTTIRTPSPI----PPVAVESPVER 402
            AA P+A V+PP   +++I  P P+    PP++   PV++
Sbjct: 1405 AAIPSAPVLPPPPVHSSIPPPGPVPMGMPPMSKPPPVQQ 1443

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>ARNT_HUMAN (P27540) Aryl hydrocarbon receptor nuclear translocator (ARNT|
           protein) (Dioxin receptor, nuclear translocator)
           (Hypoxia-inducible factor 1 beta) (HIF-1 beta)
          Length = 789

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -2

Query: 473 IKTNTTIRTPSPIPPVAVESPVERPRQKRFDTAPL--NSRESAPRRESSTLQDELDML 306
           I TNT ++  S  P   + + ++RP+       PL   S + APR++    Q ELDM+
Sbjct: 458 ICTNTNVKNSSQEPRPTLSNTIQRPQLGPTANLPLEMGSGQLAPRQQQQ--QTELDMV 513

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
 Frame = -2

Query: 452 RTPSPIPPVAVESPVER-------PRQKRFDTAPLNSRESAPRRESSTLQ 324
           R+PSP PP     P  R       P ++R  + P   R  +PRR S  +Q
Sbjct: 571 RSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQ 620

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>NFM_CHICK (P16053) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 857

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -2

Query: 485 VVPPIKTNTTIRTPSPIPPVAVESPV--ERPRQKRFDTAPLNSRESAPRRESSTLQDELD 312
           VV P K  +  +  +P  P + E P   E+PR       P   R  +P + SS L+DE  
Sbjct: 667 VVSPEKPASPEKPRTPEKPASPEKPATPEKPRTPEKPATPEKPR--SPEKPSSPLKDEKA 724

Query: 311 MLQE 300
           +++E
Sbjct: 725 VVEE 728

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>SLA2_YEAST (P33338) Protein SLA2 (Transmembrane protein MOP2)|
          Length = 968

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 461 TTIRTPSPIPPVAVESPVE-RPRQKRFDTAPLNSRESAP 348
           T  RTP+P PPV  E  +  RP  +R  + P    ++ P
Sbjct: 290 TPARTPTPTPPVVAEPAISPRPVSQRTTSTPTGYLQTMP 328

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>ANFG_CLOPA (Q46244) Nitrogenase iron-iron protein delta chain (EC 1.18.6.1)|
           (Nitrogenase component I) (Dinitrogenase 3 delta
           subunit)
          Length = 116

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 360 SRVKWGCIKPFLSRALHWGLHSHRWDRRRGSDG 458
           S+V+   +  ++ +   W  HS +WDR R ++G
Sbjct: 5   SKVQLNQLTDYIMKNCLWQFHSRKWDRERQNEG 37


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,749,414
Number of Sequences: 219361
Number of extensions: 1516399
Number of successful extensions: 6059
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 5458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6021
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result