ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YL185_MIMIV (Q5URB5) Hypothetical protein L185 28 8.9
2PPCK_STAEQ (Q5HNB7) Phosphoenolpyruvate carboxykinase [ATP] (EC ... 28 8.9

>YL185_MIMIV (Q5URB5) Hypothetical protein L185|
          Length = 392

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 361 DLRQDLLFKDGIILLQLDHGLLTKSINLVIILL 459
           D   DL+F + +ILL  ++G    +I++V ILL
Sbjct: 147 DTNNDLIFNNDLILLIFEYGFFEDTIDVVKILL 179



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>PPCK_STAEQ (Q5HNB7) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 530

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 133 KISNNEDQHFSTGMTPLHKKIRKPHLXVLVS-SSIN*KTGAMT*NHP 270
           K+      HF    T L+KKI K H   L    +IN KTG  T   P
Sbjct: 14  KLIEKATSHFQLSSTQLYKKILKNHEGELTELGAINVKTGKYTGRSP 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,023,631
Number of Sequences: 219361
Number of extensions: 1001817
Number of successful extensions: 2358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2356
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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