ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart09f12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein Length = 1225 Score = 613 bits (309), Expect = e-172 Identities = 327/333 (98%) Strand = Plus / Minus Query: 1 gcacaacaacgagcaggactacgcaacaactgagcactgatgagattacatacaagtcct 60 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1181 gcacaacaacgagcagtactacacaacaactgagcactgatgagattacatacaagtcct 1122 Query: 61 ctgtctgggttcaggtgaatacagagcaagagcaagagtagcacatcaaacttggaagac 120 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1121 ctgtctgggttcaggtgaatacagagcaagagcaagagtagtacatcaaacttggaagac 1062 Query: 121 aaattggaattccacggtaacacggacgatgggaagagagggccgcccccatcagaaaga 180 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1061 aaattggaattccacggtaacagggacgatgggaagagagggccgcccccatcagaaaga 1002 Query: 181 aattcactcagaacacgcagtttgctcttcgggttgggatggcatctttctttgtaacag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1001 aattcactcagaacacgcagtttgctcttcgggttgggatggcatctttctttgtagcag 942 Query: 241 cagcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcgg 300 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 941 cagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcgg 882 Query: 301 ccagcgcggcgccgatgaaggggccgacccaga 333 ||||||||||||||||||||||||||||||||| Sbjct: 881 ccagcgcggcgccgatgaaggggccgacccaga 849
>gb|BT018400.1| Zea mays clone EL01N0323H01.d mRNA sequence Length = 1154 Score = 123 bits (62), Expect = 4e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 240 gcagcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 299 |||||||||||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 834 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 775 Query: 300 gccagcgcggcgccgatgaaggggccgacccaga 333 ||||| |||||||||||||||||||||||||||| Sbjct: 774 gccagggcggcgccgatgaaggggccgacccaga 741
>gb|DQ207683.1| Zea mays cultivar inbred line Mo17 IDP251 marker Length = 824 Score = 123 bits (62), Expect = 4e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 240 gcagcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 299 |||||||||||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 244 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 303 Query: 300 gccagcgcggcgccgatgaaggggccgacccaga 333 ||||| |||||||||||||||||||||||||||| Sbjct: 304 gccagggcggcgccgatgaaggggccgacccaga 337
>gb|DQ207682.1| Zea mays cultivar B73 IDP251 marker Length = 763 Score = 123 bits (62), Expect = 4e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 240 gcagcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 299 |||||||||||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 533 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 474 Query: 300 gccagcgcggcgccgatgaaggggccgacccaga 333 ||||| |||||||||||||||||||||||||||| Sbjct: 473 gccagggcggcgccgatgaaggggccgacccaga 440
>gb|AF326488.1|AF326488 Zea mays plasma membrane integral protein ZmPIP1-4 mRNA, complete cds Length = 1153 Score = 123 bits (62), Expect = 4e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 240 gcagcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 299 |||||||||||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 984 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 925 Query: 300 gccagcgcggcgccgatgaaggggccgacccaga 333 ||||| |||||||||||||||||||||||||||| Sbjct: 924 gccagggcggcgccgatgaaggggccgacccaga 891
>gb|AF326487.1|AF326487 Zea mays plasma membrane integral protein ZmPIP1-3 mRNA, complete cds Length = 1296 Score = 123 bits (62), Expect = 4e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 240 gcagcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 299 |||||||||||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 979 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 920 Query: 300 gccagcgcggcgccgatgaaggggccgacccaga 333 ||||| |||||||||||||||||||||||||||| Sbjct: 919 gccagggcggcgccgatgaaggggccgacccaga 886
>gb|AY103580.1| Zea mays PCO072544 mRNA sequence Length = 1633 Score = 123 bits (62), Expect = 4e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 240 gcagcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 299 |||||||||||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 1308 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 1249 Query: 300 gccagcgcggcgccgatgaaggggccgacccaga 333 ||||| |||||||||||||||||||||||||||| Sbjct: 1248 gccagggcggcgccgatgaaggggccgacccaga 1215
>gb|BT017668.1| Zea mays clone EL01N0441H09.c mRNA sequence Length = 698 Score = 115 bits (58), Expect = 9e-23 Identities = 73/78 (93%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| ||||||| Sbjct: 425 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgccga 366 Query: 316 tgaaggggccgacccaga 333 |||||||||||||||||| Sbjct: 365 tgaaggggccgacccaga 348
>gb|AY243800.1| Zea mays plasma membrane intrinsic protein (PIP1-1) mRNA, complete cds Length = 1086 Score = 115 bits (58), Expect = 9e-23 Identities = 73/78 (93%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| ||||||| Sbjct: 856 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgccga 797 Query: 316 tgaaggggccgacccaga 333 |||||||||||||||||| Sbjct: 796 tgaaggggccgacccaga 779
>emb|X82633.1|ZMTRAPRO Z.mays mRNA for transmembrane protein Length = 1169 Score = 115 bits (58), Expect = 9e-23 Identities = 73/78 (93%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| ||||||| Sbjct: 913 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgccga 854 Query: 316 tgaaggggccgacccaga 333 |||||||||||||||||| Sbjct: 853 tgaaggggccgacccaga 836
>gb|AF131201.1| Zea mays plasma membrane MIP protein (pip1-2) mRNA, complete cds Length = 1280 Score = 115 bits (58), Expect = 9e-23 Identities = 85/94 (90%) Strand = Plus / Minus Query: 240 gcagcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 299 |||||||||||| || ||||||| ||||| |||||||||| |||||||||||||||||| Sbjct: 935 gcagcttaagacctgctcttgaacgggatggctctgatgatcacctggtggtagatggca 876 Query: 300 gccagcgcggcgccgatgaaggggccgacccaga 333 ||||| || ||||| ||||||||||||||||||| Sbjct: 875 gccagggcagcgccaatgaaggggccgacccaga 842
>emb|AJ310639.1|HVU310639 Hordeum vulgare partial pip1 gene for putative aquaporin Length = 1291 Score = 99.6 bits (50), Expect = 6e-18 Identities = 50/50 (100%) Strand = Plus / Minus Query: 284 ctggtggtagatggcggccagcgcggcgccgatgaaggggccgacccaga 333 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1291 ctggtggtagatggcggccagcgcggcgccgatgaaggggccgacccaga 1242
>gb|AY170841.1| Axonopus compressus plasma membrane MIP protein mRNA, partial cds Length = 423 Score = 97.6 bits (49), Expect = 2e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 245 ttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggccag 304 ||||||| || ||||||| ||||| || ||||||| ||||||||||||||||||||| || Sbjct: 423 ttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggcggctag 364 Query: 305 cgcggcgccgatgaaggggccgacccaga 333 || ||||| ||||||||||||||||||| Sbjct: 363 ggcagcgccaatgaaggggccgacccaga 335
>gb|U87981.1|SBU87981 Sorghum bicolor membrane intrinsic protein (Mip1) mRNA, partial cds Length = 539 Score = 97.6 bits (49), Expect = 2e-17 Identities = 82/93 (88%) Strand = Plus / Minus Query: 241 cagcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcgg 300 ||||||||||| || ||||||| ||||| || ||||||| |||||||||||||||||| | Sbjct: 359 cagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggcag 300 Query: 301 ccagcgcggcgccgatgaaggggccgacccaga 333 |||| || || || ||||||||||||||||||| Sbjct: 299 ccagggcagcaccaatgaaggggccgacccaga 267
>emb|AJ224327.1|OSAJ4327 Oryza sativa mRNA for aquaporin, complete CDS Length = 1139 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 243 gcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 302 ||||||||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 896 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 837 Query: 303 agcgcggcgccgatgaaggggccgacccaga 333 || || ||||| | |||||| || ||||||| Sbjct: 836 agggcagcgccaacgaagggaccaacccaga 806
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 243 gcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 302 ||||||||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 27065653 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 27065594 Query: 303 agcgcggcgccgatgaaggggccgacccaga 333 || || ||||| | |||||| || ||||||| Sbjct: 27065593 agggcagcgccaacgaagggaccaacccaga 27065563 Score = 60.0 bits (30), Expect = 5e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| || || |||| Sbjct: 35369403 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccagtgccgctccga 35369344 Query: 316 tgaaggggccgacccaga 333 |||| || || ||||||| Sbjct: 35369343 tgaacggaccaacccaga 35369326
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 243 gcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 302 ||||||||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 37302 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 37243 Query: 303 agcgcggcgccgatgaaggggccgacccaga 333 || || ||||| | |||||| || ||||||| Sbjct: 37242 agggcagcgccaacgaagggaccaacccaga 37212
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461B08 Length = 153743 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 243 gcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 302 ||||||||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 118855 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 118796 Query: 303 agcgcggcgccgatgaaggggccgacccaga 333 || || ||||| | |||||| || ||||||| Sbjct: 118795 agggcagcgccaacgaagggaccaacccaga 118765
>dbj|AK104658.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D06, full insert sequence Length = 1128 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 243 gcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 302 ||||||||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 929 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 870 Query: 303 agcgcggcgccgatgaaggggccgacccaga 333 || || ||||| | |||||| || ||||||| Sbjct: 869 agggcagcgccaacgaagggaccaacccaga 839
>dbj|AK103807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147A07, full insert sequence Length = 1205 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 243 gcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 302 ||||||||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 984 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 925 Query: 303 agcgcggcgccgatgaaggggccgacccaga 333 || || ||||| | |||||| || ||||||| Sbjct: 924 agggcagcgccaacgaagggaccaacccaga 894
>dbj|AK061769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C05, full insert sequence Length = 1136 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 243 gcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 302 ||||||||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 929 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 870 Query: 303 agcgcggcgccgatgaaggggccgacccaga 333 || || ||||| | |||||| || ||||||| Sbjct: 869 agggcagcgccaacgaagggaccaacccaga 839
>gb|AF022737.1|AF022737 Oryza sativa transmembrane protein mRNA, complete cds Length = 1140 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 243 gcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 302 ||||||||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 924 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 865 Query: 303 agcgcggcgccgatgaaggggccgacccaga 333 || || ||||| | |||||| || ||||||| Sbjct: 864 agggcagcgccaacgaagggaccaacccaga 834
>dbj|AB009665.1| Oryza sativa (japonica cultivar-group) mRNA for water channel protein, complete cds Length = 1116 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 243 gcttaagacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 302 ||||||||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 927 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 868 Query: 303 agcgcggcgccgatgaaggggccgacccaga 333 || || ||||| | |||||| || ||||||| Sbjct: 867 agggcagcgccaacgaagggaccaacccaga 837
>ref|XM_473480.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 83.8 bits (42), Expect = 3e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 838 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 779 Query: 316 tgaaggggccgacccaga 333 |||||||||| ||||||| Sbjct: 778 tgaaggggccaacccaga 761
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 83.8 bits (42), Expect = 3e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 28669 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 28610 Query: 316 tgaaggggccgacccaga 333 |||||||||| ||||||| Sbjct: 28609 tgaaggggccaacccaga 28592
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 83.8 bits (42), Expect = 3e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 28021443 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 28021384 Query: 316 tgaaggggccgacccaga 333 |||||||||| ||||||| Sbjct: 28021383 tgaaggggccaacccaga 28021366
>dbj|AK104736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D02, full insert sequence Length = 1163 Score = 83.8 bits (42), Expect = 3e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 915 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 856 Query: 316 tgaaggggccgacccaga 333 |||||||||| ||||||| Sbjct: 855 tgaaggggccaacccaga 838
>dbj|AK098849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E16, full insert sequence Length = 1164 Score = 83.8 bits (42), Expect = 3e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 916 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 857 Query: 316 tgaaggggccgacccaga 333 |||||||||| ||||||| Sbjct: 856 tgaaggggccaacccaga 839
>dbj|AK065188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E02, full insert sequence Length = 1167 Score = 83.8 bits (42), Expect = 3e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 918 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 859 Query: 316 tgaaggggccgacccaga 333 |||||||||| ||||||| Sbjct: 858 tgaaggggccaacccaga 841
>dbj|AK058323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B07, full insert sequence Length = 1462 Score = 83.8 bits (42), Expect = 3e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 1214 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 1155 Query: 316 tgaaggggccgacccaga 333 |||||||||| ||||||| Sbjct: 1154 tgaaggggccaacccaga 1137
>dbj|AB009309.2| Hordeum vulgare HvPIP1;5 mRNA, complete cds Length = 1147 Score = 71.9 bits (36), Expect = 1e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 270 gctctgatgaccacctggtggtagatggcggccagcgcggcgccgatgaaggggccgacc 329 |||||||||| |||||||||||||| ||| ||||| |||||||| | ||||||||| ||| Sbjct: 927 gctctgatgatcacctggtggtagacggctgccagggcggcgccaacgaaggggcccacc 868 Query: 330 caga 333 |||| Sbjct: 867 caga 864
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds Length = 1285 Score = 67.9 bits (34), Expect = 2e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| |||||||| ||||| |||||| ||||||||| || |||||||| ||||||| Sbjct: 945 tcttgaaggggatcgccctgatcaccaccacgtggtagatcgccgccagcgccgcgccga 886 Query: 316 tgaaggggccgacccaga 333 |||| || || ||||||| Sbjct: 885 tgaacggtcccacccaga 868
>ref|XM_468463.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1319 Score = 60.0 bits (30), Expect = 5e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| || || |||| Sbjct: 1008 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccagtgccgctccga 949 Query: 316 tgaaggggccgacccaga 333 |||| || || ||||||| Sbjct: 948 tgaacggaccaacccaga 931
>dbj|AP004026.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C04 Length = 103194 Score = 60.0 bits (30), Expect = 5e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| || || |||| Sbjct: 29951 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccagtgccgctccga 29892 Query: 316 tgaaggggccgacccaga 333 |||| || || ||||||| Sbjct: 29891 tgaacggaccaacccaga 29874
>dbj|AK102174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086K14, full insert sequence Length = 1318 Score = 60.0 bits (30), Expect = 5e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| || || |||| Sbjct: 1007 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccagtgccgctccga 948 Query: 316 tgaaggggccgacccaga 333 |||| || || ||||||| Sbjct: 947 tgaacggaccaacccaga 930
>gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, complete cds Length = 1248 Score = 60.0 bits (30), Expect = 5e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| ||||| || ||||| |||||| |||||||||||| |||||||| || |||| Sbjct: 930 tcttgaaggggatggccctgatcaccaccacgtggtagatggccgccagcgccgcaccga 871 Query: 316 tgaaggggccgacccaga 333 |||| || || ||||||| Sbjct: 870 tgaacggaccaacccaga 853
>dbj|AB029325.1| Oryza sativa gene for water channel protein RWC3, promoter region and complete cds Length = 5325 Score = 60.0 bits (30), Expect = 5e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| || || |||| Sbjct: 4906 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccagtgccgctccga 4847 Query: 316 tgaaggggccgacccaga 333 |||| || || ||||||| Sbjct: 4846 tgaacggaccaacccaga 4829
>dbj|AB016623.1| Oryza sativa gene for RWC-3, complete cds Length = 1403 Score = 60.0 bits (30), Expect = 5e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| || || |||| Sbjct: 985 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccagtgccgctccga 926 Query: 316 tgaaggggccgacccaga 333 |||| || || ||||||| Sbjct: 925 tgaacggaccaacccaga 908
>emb|AJ314584.1|POC314584 Posidonia oceanica mRNA for putative plasma membrane intrinsic protein (pip1a gene) Length = 1139 Score = 56.0 bits (28), Expect = 7e-05 Identities = 67/80 (83%) Strand = Plus / Minus Query: 254 ggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgcc 313 |||||||||||| || ||||||||||| | |||||||||||| || || || || || || Sbjct: 874 ggtcttgaatggaattgctctgatgactatctggtggtagattgcagcaagggcagctcc 815 Query: 314 gatgaaggggccgacccaga 333 |||||||| || ||||||| Sbjct: 814 aatgaagggaccaacccaga 795
>emb|AJ271796.1|ZMA271796 Zea mays mRNA for plasma membrane intrinsic protein (pip4 gene) Length = 1364 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 287 gtggtagatggcggccagcgcggcgccgatgaaggggccgacccaga 333 ||||||||||||||| || || || |||||||||||||| ||||||| Sbjct: 906 gtggtagatggcggcaagagcagcaccgatgaaggggccaacccaga 860
>gb|AF141643.1|AF141643 Vitis berlandieri x Vitis rupestris putative aquaporin PIP1-1 (PIP1-1) mRNA, complete cds Length = 1115 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 250 acttggtcttgaatgggatcgctctgatgaccacctggtggta 292 |||||| |||||| || || ||||||||||||||||||||||| Sbjct: 887 acttggacttgaagggaatggctctgatgaccacctggtggta 845
>gb|AF326489.1|AF326489 Zea mays plasma membrane integral protein ZmPIP1-5 mRNA, complete cds Length = 1338 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 287 gtggtagatggcggccagcgcggcgccgatgaaggggccgacccaga 333 ||||||||||||||| || || || |||||||||||||| ||||||| Sbjct: 897 gtggtagatggcggcaagagcagcaccgatgaaggggccaacccaga 851
>gb|AY107675.1| Zea mays PCO112712 mRNA sequence Length = 791 Score = 54.0 bits (27), Expect = 3e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 287 gtggtagatggcggccagcgcggcgccgatgaaggggccgacccaga 333 ||||||||||||||| || || || |||||||||||||| ||||||| Sbjct: 330 gtggtagatggcggcaagagcagcaccgatgaaggggccaacccaga 284
>gb|AF188843.1|AF188843 Vitis vinifera cultivar Pinot Noir plasma membrane aquaporin (PIP1a) mRNA, complete cds Length = 1129 Score = 50.1 bits (25), Expect = 0.005 Identities = 67/81 (82%) Strand = Plus / Minus Query: 253 tggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgc 312 |||||||||||||||| |||||||| || | ||||||||| | ||| || || || || | Sbjct: 907 tggtcttgaatgggatggctctgattactatctggtggtacaaggcagcaagagcagctc 848 Query: 313 cgatgaaggggccgacccaga 333 | |||||||| || ||||||| Sbjct: 847 caatgaagggtcccacccaga 827
>gb|AY611006.1| Xerophyta humilis isolate HC398 PIP1 aquaporin mRNA, partial cds Length = 502 Score = 48.1 bits (24), Expect = 0.018 Identities = 63/76 (82%) Strand = Plus / Minus Query: 258 ttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccgatg 317 ||||| ||||| ||||||||||| ||||||||||| | || ||||| || || |||||| Sbjct: 176 ttgaaggggattgctctgatgacgacctggtggtacagcgcagccagtgcagctccgatg 117 Query: 318 aaggggccgacccaga 333 || || || ||||||| Sbjct: 116 aatggcccaacccaga 101
>gb|AY547266.2| Ipomoea nil aquaporin-like protein (AQP1) mRNA, complete cds Length = 1189 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgaccacctggtggta 292 |||||||||||| |||||||| || ||||||||||| Sbjct: 937 cttgaatgggatggctctgatcacaacctggtggta 902
>gb|DQ149581.1| Xerophyta humilis PIP1 aquaporin mRNA, complete cds Length = 1262 Score = 48.1 bits (24), Expect = 0.018 Identities = 63/76 (82%) Strand = Plus / Minus Query: 258 ttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccgatg 317 ||||| ||||| ||||||||||| ||||||||||| | || ||||| || || |||||| Sbjct: 936 ttgaaggggattgctctgatgacgacctggtggtacagcgcagccagtgcagctccgatg 877 Query: 318 aaggggccgacccaga 333 || || || ||||||| Sbjct: 876 aatggcccaacccaga 861
>dbj|AB002149.1| Nicotiana excelsior mRNA for water channel protein, complete cds Length = 1064 Score = 48.1 bits (24), Expect = 0.018 Identities = 42/48 (87%) Strand = Plus / Minus Query: 245 ttaagacttggtcttgaatgggatcgctctgatgaccacctggtggta 292 |||||| |||||||||||||| || |||||||||| | ||||||||| Sbjct: 897 ttaagatttggtcttgaatggaatggctctgatgattatctggtggta 850
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 46.1 bits (23), Expect = 0.071 Identities = 23/23 (100%) Strand = Plus / Plus Query: 293 gatggcggccagcgcggcgccga 315 ||||||||||||||||||||||| Sbjct: 310343 gatggcggccagcgcggcgccga 310365
>emb|AJ843992.1| Plantago major partial mRNA for aquaporin 2 (aqp2 gene) Length = 1089 Score = 46.1 bits (23), Expect = 0.071 Identities = 32/35 (91%) Strand = Plus / Minus Query: 250 acttggtcttgaatgggatcgctctgatgaccacc 284 ||||| ||||||||||||| |||||||| |||||| Sbjct: 847 acttgttcttgaatgggatagctctgatcaccacc 813
>emb|AL772318.6| Mouse DNA sequence from clone RP23-77I17 on chromosome 4, complete sequence Length = 249534 Score = 46.1 bits (23), Expect = 0.071 Identities = 26/27 (96%) Strand = Plus / Minus Query: 60 tctgtctgggttcaggtgaatacagag 86 ||||||||||| ||||||||||||||| Sbjct: 225070 tctgtctgggtacaggtgaatacagag 225044
>emb|AL031227.1|DMC66A1 Drosophila melanogaster cosmid 66A1 Length = 34127 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 277 tgaccacctggtggtagatggc 298 |||||||||||||||||||||| Sbjct: 9156 tgaccacctggtggtagatggc 9135 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 277 tgaccacctggtggtagatggc 298 |||||||||||||||||||||| Sbjct: 5054 tgaccacctggtggtagatggc 5033
>emb|AJ849322.1| Populus tremula x Populus tremuloides mRNA for putative plasma membrane intrinsic protein (pip1.2 gene) Length = 1124 Score = 44.1 bits (22), Expect = 0.28 Identities = 64/78 (82%) Strand = Plus / Minus Query: 256 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccga 315 ||||||| || || ||||||||||| | ||||||||||| ||||| || || || || | Sbjct: 931 tcttgaaaggaatggctctgatgactatctggtggtagacagcggcaagagcagctccaa 872 Query: 316 tgaaggggccgacccaga 333 |||| ||||| ||||||| Sbjct: 871 tgaaagggccaacccaga 854
>gb|AC023747.4| Drosophila melanogaster X BAC RP98-38L1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167097 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 277 tgaccacctggtggtagatggc 298 |||||||||||||||||||||| Sbjct: 34675 tgaccacctggtggtagatggc 34654
>ref|NM_131946.3| Drosophila melanogaster CG12184-RA (CG12184), mRNA Length = 3292 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 277 tgaccacctggtggtagatggc 298 |||||||||||||||||||||| Sbjct: 2313 tgaccacctggtggtagatggc 2292
>gb|AY051507.1| Drosophila melanogaster GH15731 full length cDNA Length = 2897 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 277 tgaccacctggtggtagatggc 298 |||||||||||||||||||||| Sbjct: 1897 tgaccacctggtggtagatggc 1876
>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA, complete cds Length = 1283 Score = 44.1 bits (22), Expect = 0.28 Identities = 43/50 (86%) Strand = Plus / Minus Query: 284 ctggtggtagatggcggccagcgcggcgccgatgaaggggccgacccaga 333 ||||||||||| ||| || | ||| |||||||| | |||||||||||||| Sbjct: 890 ctggtggtagaaggccgcgatcgccgcgccgatcatggggccgacccaga 841
>emb|AJ699398.2| Chenopodium rubrum mRNA for aquaporin PIP1 (PIP1 gene) Length = 1163 Score = 44.1 bits (22), Expect = 0.28 Identities = 37/42 (88%) Strand = Plus / Minus Query: 251 cttggtcttgaatgggatcgctctgatgaccacctggtggta 292 ||||| |||||||||||| |||||||| || | ||||||||| Sbjct: 969 cttggacttgaatgggatggctctgataacaatctggtggta 928
>gb|AE003431.5| Drosophila melanogaster chromosome X, section 15 of 74 of the complete sequence Length = 310993 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 tgaccacctggtggtagatggc 298 |||||||||||||||||||||| Sbjct: 239024 tgaccacctggtggtagatggc 239045
>gb|AF141898.1|AF141898 Vitis berlandieri x Vitis rupestris putative aquaporin PIP1-2 (PIP1-2) mRNA, complete cds Length = 1154 Score = 42.1 bits (21), Expect = 1.1 Identities = 63/77 (81%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccgat 316 |||||||||||| |||||||| || | ||||||||| | ||| || || || || || || Sbjct: 911 cttgaatgggatggctctgattactatctggtggtacaaggcagcaagagcagctccaat 852 Query: 317 gaaggggccgacccaga 333 |||||| || ||||||| Sbjct: 851 gaagggtccaacccaga 835
>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210101 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 acatcaaacttggaagacaaa 123 ||||||||||||||||||||| Sbjct: 24157 acatcaaacttggaagacaaa 24177
>gb|AY957387.1| Pseudomonas stutzeri DnrE (dnrE) gene, complete cds; NarL-like (narL) and NarX-like (narX) genes, complete sequence; NarK (narK), NarM (narM), NarG (narG), NarH (narH), NarJ (narJ), and NarI (narI) genes, complete cds; and unknown gene Length = 15150 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 308 ggcgccgatgaaggggccgacccag 332 |||||||||||||||||||| |||| Sbjct: 5753 ggcgccgatgaaggggccgatccag 5729
>gb|AC153943.3| Mus musculus 10 BAC RP24-408O23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 171960 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 acatcaaacttggaagacaaa 123 ||||||||||||||||||||| Sbjct: 121183 acatcaaacttggaagacaaa 121203
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 291 tagatggcggccagcgcggcgccgatga 318 ||||| ||||||||| |||||||||||| Sbjct: 3446908 tagatcgcggccagcccggcgccgatga 3446881
>ref|NM_130159.2| Arabidopsis thaliana PIP1B; water channel AT2G45960 (PIP1B) mRNA, complete cds Length = 1259 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 988 cttgaatgggatggctctgatgac 965
>ref|XM_550604.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1086 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcgccgatgaaggggccga 327 |||||||||||||||||||| Sbjct: 987 ggcgccgatgaaggggccga 968
>ref|NM_187092.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1242 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 901 gcggcgccgacgaacgggccgacccaga 874
>ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1257 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 903 gcggcgccgacgaacgggccgacccaga 876
>ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1298 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 904 gcggcgccgacgaacgggccgacccaga 877
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcgccgatgaaggggccga 327 |||||||||||||||||||| Sbjct: 82946 ggcgccgatgaaggggccga 82927
>gb|AF499725.1| Thellungiella halophila plasma membrane intrinsic protein 1B-like protein mRNA, complete cds Length = 833 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 671 cttgaatgggattgctctgatgac 648
>emb|CR339052.6| Zebrafish DNA sequence from clone CH211-218E6 in linkage group 10, complete sequence Length = 127879 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cagaaagaaattcactcaga 192 |||||||||||||||||||| Sbjct: 53978 cagaaagaaattcactcaga 53997
>gb|AC007528.5| Homo sapiens 12 BAC RP11-473N11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188451 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cagagcaagagcaagagtag 101 |||||||||||||||||||| Sbjct: 155822 cagagcaagagcaagagtag 155841
>emb|AL117377.18|HSJ1037B9 Human DNA sequence from clone RP5-1037B9 on chromosome 20p12.1-13 Contains STSs, GSSs and a putative CpG island, complete sequence Length = 82183 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cacatcaaacttggaagaca 121 |||||||||||||||||||| Sbjct: 72891 cacatcaaacttggaagaca 72872
>emb|Z17424.1|ATORFA Arabidopsis thaliana mRNA for PIP1b protein Length = 1064 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 908 cttgaatgggatggctctgatgac 885
>emb|X95640.1|BOMIPBTCP B.oleracea mRNA for transmembrane channel protein (mipB) Length = 1114 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 867 cttgaatgggatggctctgatgac 844
>emb|X95639.1|BOMIPATCP B.oleracea mRNA for transmembrane channel protein (mipA) Length = 1104 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 886 cttgaatgggatggctctgatgac 863
>gb|AY091254.1| Arabidopsis thaliana putative aquaporin protein (At2g45960) mRNA, complete cds Length = 892 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 849 cttgaatgggatggctctgatgac 826
>emb|X68293.1|ATRNATPR A.thaliana mRNA for transmembrane protein A Length = 1105 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 903 cttgaatgggatggctctgatgac 880
>gb|AY063931.1| Arabidopsis thaliana putative aquaporin, plasma membrane intrinsic protein 1B (At2g45960) mRNA, complete cds Length = 1077 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 gatggcggccagcgcggcgc 312 |||||||||||||||||||| Sbjct: 539763 gatggcggccagcgcggcgc 539782
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 cccccatcagaaagaaattcactc 189 ||||||||||||| |||||||||| Sbjct: 1961051 cccccatcagaaacaaattcactc 1961028
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 gatggcggccagcgcggcgccgat 316 |||||| ||||||||||||||||| Sbjct: 1468545 gatggccgccagcgcggcgccgat 1468568
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 tggcggccagcgcggcgccg 314 |||||||||||||||||||| Sbjct: 4507898 tggcggccagcgcggcgccg 4507879
>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete sequence Length = 101647 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 15226 cttgaatgggatggctctgatgac 15249
>gb|AC016493.14| Homo sapiens chromosome 18, clone RP11-58G13, complete sequence Length = 163936 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttggaagacaaattggaatt 131 |||||||||||||||||||| Sbjct: 159892 ttggaagacaaattggaatt 159873
>gb|AC079064.6| Homo sapiens chromosome 11, clone RP11-485O14, complete sequence Length = 164009 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 catcagaaagaaattcactcagaa 193 ||||||||| |||||||||||||| Sbjct: 52709 catcagaaaaaaattcactcagaa 52732
>gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, complete sequence Length = 166503 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ttggaagacaaattggaatt 131 |||||||||||||||||||| Sbjct: 50150 ttggaagacaaattggaatt 50131
>dbj|AK222086.1| Arabidopsis thaliana mRNA for aquaporin, partial cds, clone: RAFL22-84-C08 Length = 318 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 111 cttgaatgggatggctctgatgac 88
>gb|AY049238.1| Arabidopsis thaliana clone RAFL08-10-H13(R13205), mRNA sequence Length = 1913 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>gb|AF299051.1|AF299051 Brassica oleracea aquaporin PIP1b2 mRNA, complete cds Length = 1101 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 868 cttgaatgggatggctctgatgac 845
>gb|AF299050.1|AF299050 Brassica oleracea aquaporin PIP1b1 mRNA, complete cds Length = 1084 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 885 cttgaatgggatggctctgatgac 862
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 15355775 gcggcgccgacgaacgggccgacccaga 15355748
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcgccgatgaaggggccga 327 |||||||||||||||||||| Sbjct: 1762730 ggcgccgatgaaggggccga 1762711
>emb|BX820173.1|CNS0A8G3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS86ZH06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1084 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 889 cttgaatgggatggctctgatgac 866
>emb|BX819664.1|CNS0A8JV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS13ZG09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 679 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 522 cttgaatgggatggctctgatgac 499
>emb|BX820969.1|CNS0A7WJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH87ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1036 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 894 cttgaatgggatggctctgatgac 871
>emb|BX819791.1|CNS0A7WA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1060 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 881 cttgaatgggatggctctgatgac 858
>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel protein, partial cds Length = 880 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 467 gcggcgccgacgaacgggccgacccaga 440
>gb|AY048294.1| Arabidopsis thaliana At2g45960/F4I18.6 mRNA, complete cds Length = 1052 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_A06 Length = 111673 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 62774 gcggcgccgacgaacgggccgacccaga 62747
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcgccgatgaaggggccga 327 |||||||||||||||||||| Sbjct: 87879 ggcgccgatgaaggggccga 87860
>emb|AJ243257.1|SNA243257 Streptomyces natalensis plasmid pSNA1 including spda, kora, spdb2 and rep genes Length = 9367 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 tggcggccagcgcggcgccg 314 |||||||||||||||||||| Sbjct: 4015 tggcggccagcgcggcgccg 3996
>dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H04, full insert sequence Length = 1216 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 901 gcggcgccgacgaacgggccgacccaga 874
>emb|Z17399.1|ATORFB Arabidopsis thaliana PIP1b gene Length = 2773 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 1547 cttgaatgggatggctctgatgac 1524
>dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G02, full insert sequence Length = 1451 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 495 gcggcgccgacgaacgggccgacccaga 468
>dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B05, full insert sequence Length = 1242 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 901 gcggcgccgacgaacgggccgacccaga 874
>dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G03, full insert sequence Length = 1257 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 903 gcggcgccgacgaacgggccgacccaga 876
>dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K12, full insert sequence Length = 1298 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 904 gcggcgccgacgaacgggccgacccaga 877
>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds Length = 1328 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||| ||| ||||||||||||| Sbjct: 891 gcggcgccgacgaacgggccgacccaga 864
>gb|AY107589.1| Zea mays PCO085320 mRNA sequence Length = 569 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 ||||||||||||| ||||||||||||| Sbjct: 209 gcggcgccgatgagtgggccgacccaga 182
>gb|AF004293.1|AF004293 Brassica rapa aquaporin (MOD) mRNA, complete cds Length = 900 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 867 cttgaatgggatggctctgatgac 844
>gb|AF366565.1| Triticum aestivum aquaporin PIP2 (Pip2) mRNA, complete cds Length = 1071 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 306 gcggcgccgatgaaggggccgacccaga 333 |||||||||||||| ||||| ||||||| Sbjct: 792 gcggcgccgatgaacgggccaacccaga 765
>dbj|AB030695.1| Raphanus sativus PAQ1b mRNA for plasma membrane aquaporin 1b, complete cds Length = 1053 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 cttgaatgggatcgctctgatgac 280 |||||||||||| ||||||||||| Sbjct: 870 cttgaatgggatggctctgatgac 847 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,312,014 Number of Sequences: 3902068 Number of extensions: 3312014 Number of successful extensions: 63564 Number of sequences better than 10.0: 114 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63086 Number of HSP's gapped (non-prelim): 478 length of query: 333 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 311 effective length of database: 17,147,199,772 effective search space: 5332779129092 effective search space used: 5332779129092 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
