ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart09f10 |
|---|---|
| Clone Library Name | barley_pub |
>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic| protein 1.2) (OsPIP1.2) Length = 282 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/21 (95%), Positives = 21/21 (100%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRAIPF 296 PF+GAALAAIYHQVVIRAIPF Sbjct: 258 PFIGAALAAIYHQVVIRAIPF 278
>PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)| (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1) Length = 289 Score = 43.5 bits (101), Expect = 1e-04 Identities = 19/21 (90%), Positives = 21/21 (100%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRAIPF 296 PF+GAALAAIYHQV+IRAIPF Sbjct: 265 PFVGAALAAIYHQVIIRAIPF 285
>PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-responsive protein| 7a) (Turgor-responsive protein 31) Length = 289 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/21 (90%), Positives = 21/21 (100%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRAIPF 296 PF+GAALAA+YHQVVIRAIPF Sbjct: 266 PFIGAALAALYHQVVIRAIPF 286
>PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane intrinsic| protein 1d) (PIP1d) Length = 287 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/21 (85%), Positives = 21/21 (100%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRAIPF 296 PF+GAALAA+YHQ+VIRAIPF Sbjct: 263 PFIGAALAALYHQIVIRAIPF 283
>PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane intrinsic| protein 1.4) (Transmembrane protein C) (TMP-C) Length = 287 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/21 (85%), Positives = 21/21 (100%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRAIPF 296 PF+GAALAA+YHQ+VIRAIPF Sbjct: 263 PFIGAALAALYHQIVIRAIPF 283
>PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic protein 1c)| (PIP1c) (Transmembrane protein B) (TMP-B) Length = 286 Score = 42.0 bits (97), Expect = 4e-04 Identities = 18/21 (85%), Positives = 21/21 (100%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRAIPF 296 PF+GAALAA+YHQ+VIRAIPF Sbjct: 262 PFIGAALAALYHQLVIRAIPF 282
>PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsic protein 1.3)| (OsPIP1.3) (Water channel protein RWC3) (RWC-3) Length = 288 Score = 41.2 bits (95), Expect = 6e-04 Identities = 19/21 (90%), Positives = 20/21 (95%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRAIPF 296 PF+GAALAAIYH VVIRAIPF Sbjct: 264 PFIGAALAAIYHVVVIRAIPF 284
>PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)| (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1) Length = 286 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRAIPF 296 PF+GAALAA+YH VVIRAIPF Sbjct: 262 PFIGAALAALYHVVVIRAIPF 282
>PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)| (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1) Length = 286 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRAIPF 296 PF+GAALAA+YH VVIRAIPF Sbjct: 262 PFIGAALAALYHVVVIRAIPF 282
>PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic protein 1b)| (PIP1b) (Transmembrane protein A) (TMP-A) (AthH2) Length = 286 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/21 (80%), Positives = 20/21 (95%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRAIPF 296 PF+GAALAA+YH +VIRAIPF Sbjct: 262 PFIGAALAALYHVIVIRAIPF 282
>PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening-associated| membrane protein) (RAMP) Length = 286 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/21 (76%), Positives = 20/21 (95%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRAIPF 296 P +GAALAAIYHQ++IRA+PF Sbjct: 263 PMIGAALAAIYHQIIIRAMPF 283
>PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic protein 2.4)| (OsPIP2.4) Length = 286 Score = 34.7 bits (78), Expect = 0.059 Identities = 13/18 (72%), Positives = 18/18 (100%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF+GAA+AA+YHQV++RA Sbjct: 257 PFIGAAIAALYHQVILRA 274
>PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic protein 2.5)| (OsPIP2.5) Length = 283 Score = 34.7 bits (78), Expect = 0.059 Identities = 13/18 (72%), Positives = 18/18 (100%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF+GAA+AA+YHQ+V+RA Sbjct: 254 PFIGAAIAALYHQIVLRA 271
>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic| protein 2e) (PIP2e) Length = 289 Score = 32.3 bits (72), Expect = 0.29 Identities = 13/18 (72%), Positives = 16/18 (88%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF+GAA+AA YHQ V+RA Sbjct: 254 PFVGAAIAAFYHQFVLRA 271
>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)| (PIP2a) Length = 287 Score = 32.3 bits (72), Expect = 0.29 Identities = 13/18 (72%), Positives = 16/18 (88%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF+GAA+AA YHQ V+RA Sbjct: 255 PFIGAAIAAFYHQFVLRA 272
>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)| (PIP2b) (TMP2b) Length = 285 Score = 32.3 bits (72), Expect = 0.29 Identities = 13/18 (72%), Positives = 16/18 (88%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF+GAA+AA YHQ V+RA Sbjct: 253 PFIGAAIAAFYHQFVLRA 270
>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic| protein 2a) (PIP2a) (OsPIP2.1) Length = 290 Score = 32.0 bits (71), Expect = 0.38 Identities = 12/18 (66%), Positives = 16/18 (88%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF+GAA+AA YHQ ++RA Sbjct: 260 PFVGAAIAAFYHQYILRA 277
>EGFL8_HUMAN (Q99944) EGF-like domain-containing protein 8 precursor (Epidermal| growth factor-like protein 8) (Multiple EGF-like domain protein 8) (Vascular endothelial-statin 2) (VE-statin-2) Length = 293 Score = 32.0 bits (71), Expect = 0.38 Identities = 26/79 (32%), Positives = 35/79 (44%) Frame = +2 Query: 17 ETTLLDLHNNEQYYTTTEH**DYIPVLCLGSGEYRARARVAHQTWKTNWNSTVTRTMGRE 196 +T ++ LH NE Y Y P L L +G R T++T + R M RE Sbjct: 41 QTLVVPLHYNESYSQPV-----YKPYLTLCAG------RRICSTYRTMY-----RVMWRE 84 Query: 197 GRPHQKEIHSEHAVCSSGW 253 R +E+ HAVC GW Sbjct: 85 VR---REVQQTHAVCCQGW 100
>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic| protein 2d) (PIP2d) Length = 286 Score = 31.6 bits (70), Expect = 0.50 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF GAA+AA YHQ V+RA Sbjct: 254 PFAGAAIAAFYHQFVLRA 271
>RNT_XYLFT (Q87C86) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)| Length = 211 Score = 31.6 bits (70), Expect = 0.50 Identities = 16/63 (25%), Positives = 27/63 (42%) Frame = +2 Query: 164 NSTVTRTMGREGRPHQKEIHSEHAVCSSGWDGIFLCSSSLGLGLEWDRSDDHLVVDGGQR 343 N+ VTRT + HQ + + + L + GL+W+ +D H V ++ Sbjct: 134 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEK 193 Query: 344 GAH 352 AH Sbjct: 194 TAH 196
>RNT_XYLFA (Q9PBJ8) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)| Length = 211 Score = 31.6 bits (70), Expect = 0.50 Identities = 16/63 (25%), Positives = 27/63 (42%) Frame = +2 Query: 164 NSTVTRTMGREGRPHQKEIHSEHAVCSSGWDGIFLCSSSLGLGLEWDRSDDHLVVDGGQR 343 N+ VTRT + HQ + + + L + GL+W+ +D H V ++ Sbjct: 134 NAAVTRTAYKRNPFHQFSVFDTVTLAGMAYGQTVLARAVQAAGLDWNAADAHSAVYDAEK 193 Query: 344 GAH 352 AH Sbjct: 194 TAH 196
>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)| (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced tonoplast intrinsic protein) (WSI-TIP) Length = 285 Score = 30.8 bits (68), Expect = 0.85 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF+GA +AA YHQ V+RA Sbjct: 253 PFIGATIAAFYHQFVLRA 270
>CRIP3_HUMAN (Q6Q6R5) Cysteine-rich protein 3 (CRP3) (Chromosome 6 LIM-only| protein) (h6LIMo) Length = 217 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Frame = +2 Query: 188 GREGRPHQKEIHSEHAVCSSGWDGIFLCSSSLGLGLEWDR-----SDDHLVVDGGQRGAH 352 G++ PH K E ++C + ++ + LG W R H + G H Sbjct: 107 GKKSPPHMKTFTGETSLCPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEH 166 Query: 353 EG 358 +G Sbjct: 167 DG 168
>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic| protein 2.2) (OsPIP2.2) Length = 288 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 P +GAA+AA YHQ V+RA Sbjct: 259 PLIGAAIAAAYHQYVLRA 276
>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic| protein 2.3) (OsPIP2.3) Length = 290 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 P +GAA+AA YHQ V+RA Sbjct: 260 PLIGAAIAAAYHQYVLRA 277
>UN13C_HUMAN (Q8NB66) Unc-13 homolog C (Munc13-3) (Fragment)| Length = 1190 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/41 (29%), Positives = 19/41 (46%) Frame = +2 Query: 101 LGSGEYRARARVAHQTWKTNWNSTVTRTMGREGRPHQKEIH 223 LG + + + TW +N T +G+E RP E+H Sbjct: 1070 LGDKKRKQGTKTKSNTWSPKYNETFQFILGKENRPGAYELH 1110
>NUCC_PSINU (Q8WHX3) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 393 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Frame = +2 Query: 128 ARVAHQTWKTNWNSTVTRTMGREGRPHQKEIHSEHAV---CSSGWDGIFLCSSSLGLGLE 298 AR HQ+ WN + MG++ P K + EH V G GIFL + Sbjct: 292 ARRLHQSQNLEWNDFDYQFMGKKSSPTFKLLKQEHYVRIEAPKGELGIFLIGNDSVFPWR 351 Query: 299 W 301 W Sbjct: 352 W 352
>VE2_PAPVE (P11329) Probable regulatory protein E2| Length = 415 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Frame = +2 Query: 89 PVLCLGSG----EYRARARVAHQTWKTNWNSTVTRTMGREGRPHQKEIHSEHAVCSSGWD 256 P CL G E +++TW T W++ R EG E AVC++ Sbjct: 108 PKGCLKKGARVVEVEYDGNSSNKTWYTAWSTVYVRGTEEEG--------WETAVCAADGQ 159 Query: 257 GIFLCS 274 GI+ C+ Sbjct: 160 GIYYCA 165
>UN13C_RAT (Q62770) Unc-13 homolog C (Munc13-3)| Length = 2204 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/41 (29%), Positives = 18/41 (43%) Frame = +2 Query: 101 LGSGEYRARARVAHQTWKTNWNSTVTRTMGREGRPHQKEIH 223 LG + + + TW +N T +G E RP E+H Sbjct: 2084 LGDKKRKQGTKTKSNTWSPKYNETFQFILGNENRPGAYELH 2124
>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)| (Salt stress-induced major intrinsic protein) Length = 280 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF+GA AA YHQ ++RA Sbjct: 248 PFLGALAAAAYHQYILRA 265
>TENS1_HUMAN (Q9HBL0) Tensin-1| Length = 1735 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 6/47 (12%) Frame = -1 Query: 345 PRWPPSTTRWSSERSH------SRPSPKLLLQRKMPSQPEEQTACSE 223 PR PP ER+H SRPSP+ L + +PS PE A S+ Sbjct: 660 PRPPPR----QQERAHLESLVASRPSPQPLAETPIPSLPEFPRAASQ 702
>PIP1_ATRCA (P42767) Aquaporin PIP-type| Length = 282 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF+GA AA YHQ V+RA Sbjct: 250 PFVGALAAAAYHQYVLRA 267
>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic| protein 3b) (PIP3b) Length = 278 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF+GA AA YHQ ++RA Sbjct: 246 PFVGALAAAAYHQYILRA 263
>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic| protein 2.4) Length = 291 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 P +GAA AA YHQ ++RA Sbjct: 255 PMIGAAAAAFYHQFILRA 272
>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic| protein 2.6) (OsPIP2.6) Length = 282 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -3 Query: 358 PFMGAALAAIYHQVVIRA 305 PF+GA AA YHQ ++RA Sbjct: 250 PFIGALAAAAYHQYILRA 267
>CRIM1_HUMAN (Q9NZV1) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)| (Cysteine-rich repeat-containing protein S52) Length = 1036 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = -2 Query: 86 CNLISAQLLCSTARCCANP 30 CN+I+ + C+T R C+NP Sbjct: 133 CNIINGKCECNTIRTCSNP 151
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 27.7 bits (60), Expect = 7.2 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Frame = -2 Query: 296 QDQVLSCCYKERCHPNPKSKLRVLSEFLFDGGGP-----LFPSSVLPWNSNLSSKFDVXX 132 Q+ S + +R P+P +++RVL F GGP +F + + W S+ D Sbjct: 2168 QNAADSMLFVQRLTPHPDARIRVLP--AFSAGGPPTRGLMFGTRLADWRRGKLSETDPLA 2225 Query: 131 XXXLGIHLNPDRGLVCNLIS-AQLLCSTA 48 L +RG +S AQ L + + Sbjct: 2226 PWRSVPELGTERGAALGKLSPAQALAAVS 2254
>PAK1_YEAST (P38990) Serine/threonine-protein kinase PAK1 (EC 2.7.11.1)| Length = 1142 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +1 Query: 124 KSKSSTSNLEDKLEFHGNTDDGK 192 K+ + TSNL D +EF+GN D K Sbjct: 1024 KATTETSNLTDIVEFNGNNDHRK 1046
>UNG_BIFLO (Q8G3E9) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 213 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -2 Query: 284 LSCCYKERCHPNPKSKLRVLSEFLFDGGGPLFPSSVL-PW 168 LS C HP PKS + + E + D G P+ + L PW Sbjct: 62 LSFCVAPNVHPLPKSLVNIYKELVDDLGVPMPTNGDLTPW 101
>PMIP_RAT (Q01992) Mitochondrial intermediate peptidase, mitochondrial| precursor (EC 3.4.24.59) (MIP) Length = 710 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -2 Query: 353 HGRRAGRHLPPGGHQSDPIQDQVLSCCYKERCHPNPKSKLRVLSEFL 213 H R GRHL G ++ D V YK +PN +L+ L E L Sbjct: 239 HFARDGRHLVIDGLHAEASDDLVREAAYKIFLYPN-ADQLKCLEELL 284
>GLYC_NEUCR (P34898) Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)| (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 480 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -2 Query: 359 PLHGRRAGRHLPPGGHQSDPIQ 294 P+HGR G LP GGH S Q Sbjct: 125 PVHGRLMGLDLPHGGHLSHGYQ 146
>NPC2_SCHPO (Q9C0X9) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 188 Score = 27.3 bits (59), Expect = 9.4 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = +2 Query: 296 EWDRSDDHLVVD 331 +WDR DDH+VVD Sbjct: 55 DWDRGDDHVVVD 66
>SNX18_MOUSE (Q91ZR2) Sorting nexin-18 (Sorting nexin-associated Golgi protein| 1) Length = 614 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = -1 Query: 336 PPSTTRWSSERSHSRPSPKLLL 271 PP+ + WS E H P P+ LL Sbjct: 202 PPAPSVWSQELGHGEPQPQSLL 223
>Y1931_VIBCH (Q9KQR7) UPF0061 protein VC1931| Length = 489 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 131 RVAHQTWKTNWNSTVTRTMGREGRP 205 R A +TW T + R +G+EGRP Sbjct: 389 REAAKTWLTRYLERAARELGQEGRP 413
>K0256_HUMAN (Q93073) Protein KIAA0256| Length = 1101 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/36 (27%), Positives = 21/36 (58%) Frame = +2 Query: 128 ARVAHQTWKTNWNSTVTRTMGREGRPHQKEIHSEHA 235 + V + ++TNW + V + G E ++KE+ +H+ Sbjct: 867 SEVNEKEYETNWRNMVETSDGLEASENEKEVSCKHS 902 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,531,511 Number of Sequences: 219361 Number of extensions: 1167605 Number of successful extensions: 3504 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 3402 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3503 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
