Clone Name | rbart09f10 |
---|---|
Clone Library Name | barley_pub |
>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein Length = 1225 Score = 630 bits (318), Expect = e-178 Identities = 336/342 (98%) Strand = Plus / Minus Query: 19 aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1199 aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 1140 Query: 79 agattacataccagtcctctgtctgggttcaggtgaataccgagcaagagcaagagtagc 138 ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1139 agattacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagt 1080 Query: 139 acatcaaacttggaagacaaattggaattccacggtaacacggacgatgggaagagaggg 198 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1079 acatcaaacttggaagacaaattggaattccacggtaacagggacgatgggaagagaggg 1020 Query: 199 ccgcccccatcaaaaagaaattcactcagaacacgcagtttgctcttcgggttgggatgg 258 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1019 ccgcccccatcagaaagaaattcactcagaacacgcagtttgctcttcgggttgggatgg 960 Query: 259 catctttctttgtagcagcagcttaggacttggtcttgaatgggatcgctctgatgacca 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 959 catctttctttgtagcagcagcttaggacttggtcttgaatgggatcgctctgatgacca 900 Query: 319 cctggtggtagatggcggccagcgcggcgcccatgaaggggc 360 ||||||||||||||||||||||||||||||| |||||||||| Sbjct: 899 cctggtggtagatggcggccagcgcggcgccgatgaaggggc 858
>gb|BT018400.1| Zea mays clone EL01N0323H01.d mRNA sequence Length = 1154 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 276 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 335 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 834 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 775 Query: 336 gccagcgcggcgcccatgaaggggc 360 ||||| |||||||| |||||||||| Sbjct: 774 gccagggcggcgccgatgaaggggc 750
>gb|BT017668.1| Zea mays clone EL01N0441H09.c mRNA sequence Length = 698 Score = 89.7 bits (45), Expect = 6e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccca 351 ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| ||||| | Sbjct: 425 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgccga 366 Query: 352 tgaaggggc 360 ||||||||| Sbjct: 365 tgaaggggc 357
>gb|DQ207683.1| Zea mays cultivar inbred line Mo17 IDP251 marker Length = 824 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 276 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 335 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 244 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 303 Query: 336 gccagcgcggcgcccatgaaggggc 360 ||||| |||||||| |||||||||| Sbjct: 304 gccagggcggcgccgatgaaggggc 328
>gb|DQ207682.1| Zea mays cultivar B73 IDP251 marker Length = 763 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 276 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 335 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 533 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 474 Query: 336 gccagcgcggcgcccatgaaggggc 360 ||||| |||||||| |||||||||| Sbjct: 473 gccagggcggcgccgatgaaggggc 449
>gb|AY243800.1| Zea mays plasma membrane intrinsic protein (PIP1-1) mRNA, complete cds Length = 1086 Score = 89.7 bits (45), Expect = 6e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccca 351 ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| ||||| | Sbjct: 856 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgccga 797 Query: 352 tgaaggggc 360 ||||||||| Sbjct: 796 tgaaggggc 788
>emb|X82633.1|ZMTRAPRO Z.mays mRNA for transmembrane protein Length = 1169 Score = 89.7 bits (45), Expect = 6e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccca 351 ||||||| |||||||| ||||||| |||||||||||||||||| |||||||| ||||| | Sbjct: 913 tcttgaacgggatcgccctgatgatcacctggtggtagatggcagccagcgcagcgccga 854 Query: 352 tgaaggggc 360 ||||||||| Sbjct: 853 tgaaggggc 845
>gb|AF326488.1|AF326488 Zea mays plasma membrane integral protein ZmPIP1-4 mRNA, complete cds Length = 1153 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 276 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 335 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 984 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 925 Query: 336 gccagcgcggcgcccatgaaggggc 360 ||||| |||||||| |||||||||| Sbjct: 924 gccagggcggcgccgatgaaggggc 900
>gb|AF326487.1|AF326487 Zea mays plasma membrane integral protein ZmPIP1-3 mRNA, complete cds Length = 1296 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 276 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 335 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 979 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 920 Query: 336 gccagcgcggcgcccatgaaggggc 360 ||||| |||||||| |||||||||| Sbjct: 919 gccagggcggcgccgatgaaggggc 895
>gb|AY103580.1| Zea mays PCO072544 mRNA sequence Length = 1633 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 276 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 335 |||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||||| Sbjct: 1308 gcagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggca 1249 Query: 336 gccagcgcggcgcccatgaaggggc 360 ||||| |||||||| |||||||||| Sbjct: 1248 gccagggcggcgccgatgaaggggc 1224
>gb|AF131201.1| Zea mays plasma membrane MIP protein (pip1-2) mRNA, complete cds Length = 1280 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 276 gcagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcg 335 |||||||| ||| || ||||||| ||||| |||||||||| |||||||||||||||||| Sbjct: 935 gcagcttaagacctgctcttgaacgggatggctctgatgatcacctggtggtagatggca 876 Query: 336 gccagcgcggcgcccatgaaggggc 360 ||||| || ||||| |||||||||| Sbjct: 875 gccagggcagcgccaatgaaggggc 851
>emb|AJ224327.1|OSAJ4327 Oryza sativa mRNA for aquaporin, complete CDS Length = 1139 Score = 79.8 bits (40), Expect = 6e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 279 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 338 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 896 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 837 Query: 339 agcgcggcgcccatgaaggg 358 || || ||||| | |||||| Sbjct: 836 agggcagcgccaacgaaggg 817
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 79.8 bits (40), Expect = 6e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 279 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 338 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 27065653 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 27065594 Query: 339 agcgcggcgcccatgaaggg 358 || || ||||| | |||||| Sbjct: 27065593 agggcagcgccaacgaaggg 27065574 Score = 50.1 bits (25), Expect = 0.005 Identities = 43/49 (87%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccag 340 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| Sbjct: 35369403 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccag 35369355
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 79.8 bits (40), Expect = 6e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 279 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 338 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 37302 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 37243 Query: 339 agcgcggcgcccatgaaggg 358 || || ||||| | |||||| Sbjct: 37242 agggcagcgccaacgaaggg 37223
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461B08 Length = 153743 Score = 79.8 bits (40), Expect = 6e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 279 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 338 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 118855 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 118796 Query: 339 agcgcggcgcccatgaaggg 358 || || ||||| | |||||| Sbjct: 118795 agggcagcgccaacgaaggg 118776
>dbj|AK104658.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D06, full insert sequence Length = 1128 Score = 79.8 bits (40), Expect = 6e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 279 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 338 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 929 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 870 Query: 339 agcgcggcgcccatgaaggg 358 || || ||||| | |||||| Sbjct: 869 agggcagcgccaacgaaggg 850
>dbj|AK103807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147A07, full insert sequence Length = 1205 Score = 79.8 bits (40), Expect = 6e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 279 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 338 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 984 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 925 Query: 339 agcgcggcgcccatgaaggg 358 || || ||||| | |||||| Sbjct: 924 agggcagcgccaacgaaggg 905
>dbj|AK061769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C05, full insert sequence Length = 1136 Score = 79.8 bits (40), Expect = 6e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 279 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 338 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 929 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 870 Query: 339 agcgcggcgcccatgaaggg 358 || || ||||| | |||||| Sbjct: 869 agggcagcgccaacgaaggg 850
>gb|AF022737.1|AF022737 Oryza sativa transmembrane protein mRNA, complete cds Length = 1140 Score = 79.8 bits (40), Expect = 6e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 279 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 338 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 924 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 865 Query: 339 agcgcggcgcccatgaaggg 358 || || ||||| | |||||| Sbjct: 864 agggcagcgccaacgaaggg 845
>dbj|AB009665.1| Oryza sativa (japonica cultivar-group) mRNA for water channel protein, complete cds Length = 1116 Score = 79.8 bits (40), Expect = 6e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 279 gcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcggcc 338 ||||| ||| || |||||||||||||||| ||||||| |||||||||||||||||| ||| Sbjct: 927 gcttaagacctgctcttgaatgggatcgccctgatgatcacctggtggtagatggcagcc 868 Query: 339 agcgcggcgcccatgaaggg 358 || || ||||| | |||||| Sbjct: 867 agggcagcgccaacgaaggg 848
>ref|XM_473480.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 73.8 bits (37), Expect = 3e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccca 351 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 838 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 779 Query: 352 tgaaggggc 360 ||||||||| Sbjct: 778 tgaaggggc 770
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 73.8 bits (37), Expect = 3e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccca 351 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 28669 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 28610 Query: 352 tgaaggggc 360 ||||||||| Sbjct: 28609 tgaaggggc 28601
>emb|AJ310639.1|HVU310639 Hordeum vulgare partial pip1 gene for putative aquaporin Length = 1291 Score = 73.8 bits (37), Expect = 3e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 320 ctggtggtagatggcggccagcgcggcgcccatgaaggggc 360 |||||||||||||||||||||||||||||| |||||||||| Sbjct: 1291 ctggtggtagatggcggccagcgcggcgccgatgaaggggc 1251
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 73.8 bits (37), Expect = 3e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccca 351 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 28021443 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 28021384 Query: 352 tgaaggggc 360 ||||||||| Sbjct: 28021383 tgaaggggc 28021375
>gb|AY170841.1| Axonopus compressus plasma membrane MIP protein mRNA, partial cds Length = 423 Score = 73.8 bits (37), Expect = 3e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccca 351 ||||||| ||||| || ||||||| ||||||||||||||||||||| || || ||||| | Sbjct: 412 tcttgaacgggatggccctgatgatcacctggtggtagatggcggctagggcagcgccaa 353 Query: 352 tgaaggggc 360 ||||||||| Sbjct: 352 tgaaggggc 344
>dbj|AK104736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D02, full insert sequence Length = 1163 Score = 73.8 bits (37), Expect = 3e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccca 351 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 915 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 856 Query: 352 tgaaggggc 360 ||||||||| Sbjct: 855 tgaaggggc 847
>dbj|AK098849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E16, full insert sequence Length = 1164 Score = 73.8 bits (37), Expect = 3e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccca 351 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 916 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 857 Query: 352 tgaaggggc 360 ||||||||| Sbjct: 856 tgaaggggc 848
>dbj|AK065188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E02, full insert sequence Length = 1167 Score = 73.8 bits (37), Expect = 3e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccca 351 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 918 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 859 Query: 352 tgaaggggc 360 ||||||||| Sbjct: 858 tgaaggggc 850
>dbj|AK058323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B07, full insert sequence Length = 1462 Score = 73.8 bits (37), Expect = 3e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgcggcgccca 351 |||||||||| || || |||||||||||||||||||||||||| || || || ||||| | Sbjct: 1214 tcttgaatggaattgccctgatgaccacctggtggtagatggcagcaagggcagcgccaa 1155 Query: 352 tgaaggggc 360 ||||||||| Sbjct: 1154 tgaaggggc 1146
>gb|U87981.1|SBU87981 Sorghum bicolor membrane intrinsic protein (Mip1) mRNA, partial cds Length = 539 Score = 71.9 bits (36), Expect = 1e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 277 cagcttaggacttggtcttgaatgggatcgctctgatgaccacctggtggtagatggcgg 336 ||||||| ||| || ||||||| ||||| || ||||||| |||||||||||||||||| | Sbjct: 359 cagcttaagacctgctcttgaacgggatggccctgatgatcacctggtggtagatggcag 300 Query: 337 ccagcgcggcgcccatgaaggggc 360 |||| || || || |||||||||| Sbjct: 299 ccagggcagcaccaatgaaggggc 276
>dbj|AB009309.2| Hordeum vulgare HvPIP1;5 mRNA, complete cds Length = 1147 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 306 gctctgatgaccacctggtggtagatggcggccagcgcggcgcccatgaaggggc 360 |||||||||| |||||||||||||| ||| ||||| |||||||| | |||||||| Sbjct: 927 gctctgatgatcacctggtggtagacggctgccagggcggcgccaacgaaggggc 873
>gb|AF141643.1|AF141643 Vitis berlandieri x Vitis rupestris putative aquaporin PIP1-1 (PIP1-1) mRNA, complete cds Length = 1115 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 286 acttggtcttgaatgggatcgctctgatgaccacctggtggta 328 |||||| |||||| || || ||||||||||||||||||||||| Sbjct: 887 acttggacttgaagggaatggctctgatgaccacctggtggta 845
>emb|AJ314584.1|POC314584 Posidonia oceanica mRNA for putative plasma membrane intrinsic protein (pip1a gene) Length = 1139 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 290 ggtcttgaatgggatcgctctgatgaccacctggtggtagat 331 |||||||||||| || ||||||||||| | |||||||||||| Sbjct: 874 ggtcttgaatggaattgctctgatgactatctggtggtagat 833
>ref|XM_468463.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1319 Score = 50.1 bits (25), Expect = 0.005 Identities = 43/49 (87%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccag 340 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| Sbjct: 1008 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccag 960
>dbj|AP004026.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C04 Length = 103194 Score = 50.1 bits (25), Expect = 0.005 Identities = 43/49 (87%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccag 340 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| Sbjct: 29951 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccag 29903
>dbj|AK102174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086K14, full insert sequence Length = 1318 Score = 50.1 bits (25), Expect = 0.005 Identities = 43/49 (87%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccag 340 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| Sbjct: 1007 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccag 959
>dbj|AB029325.1| Oryza sativa gene for water channel protein RWC3, promoter region and complete cds Length = 5325 Score = 50.1 bits (25), Expect = 0.005 Identities = 43/49 (87%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccag 340 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| Sbjct: 4906 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccag 4858
>dbj|AB016623.1| Oryza sativa gene for RWC-3, complete cds Length = 1403 Score = 50.1 bits (25), Expect = 0.005 Identities = 43/49 (87%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccag 340 ||||||| ||||| |||||||| |||||| |||||||||||| ||||| Sbjct: 985 tcttgaaggggattgctctgatcaccaccacgtggtagatggccgccag 937
>gb|AY547266.2| Ipomoea nil aquaporin-like protein (AQP1) mRNA, complete cds Length = 1189 Score = 48.1 bits (24), Expect = 0.020 Identities = 33/36 (91%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgaccacctggtggta 328 |||||||||||| |||||||| || ||||||||||| Sbjct: 937 cttgaatgggatggctctgatcacaacctggtggta 902
>gb|AF188843.1|AF188843 Vitis vinifera cultivar Pinot Noir plasma membrane aquaporin (PIP1a) mRNA, complete cds Length = 1129 Score = 48.1 bits (24), Expect = 0.020 Identities = 36/40 (90%) Strand = Plus / Minus Query: 289 tggtcttgaatgggatcgctctgatgaccacctggtggta 328 |||||||||||||||| |||||||| || | ||||||||| Sbjct: 907 tggtcttgaatgggatggctctgattactatctggtggta 868
>gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, complete cds Length = 1248 Score = 48.1 bits (24), Expect = 0.020 Identities = 45/52 (86%) Strand = Plus / Minus Query: 292 tcttgaatgggatcgctctgatgaccacctggtggtagatggcggccagcgc 343 ||||||| ||||| || ||||| |||||| |||||||||||| |||||||| Sbjct: 930 tcttgaaggggatggccctgatcaccaccacgtggtagatggccgccagcgc 879
>gb|AY611006.1| Xerophyta humilis isolate HC398 PIP1 aquaporin mRNA, partial cds Length = 502 Score = 46.1 bits (23), Expect = 0.078 Identities = 32/35 (91%) Strand = Plus / Minus Query: 294 ttgaatgggatcgctctgatgaccacctggtggta 328 ||||| ||||| ||||||||||| ||||||||||| Sbjct: 176 ttgaaggggattgctctgatgacgacctggtggta 142
>emb|AJ843992.1| Plantago major partial mRNA for aquaporin 2 (aqp2 gene) Length = 1089 Score = 46.1 bits (23), Expect = 0.078 Identities = 32/35 (91%) Strand = Plus / Minus Query: 286 acttggtcttgaatgggatcgctctgatgaccacc 320 ||||| ||||||||||||| |||||||| |||||| Sbjct: 847 acttgttcttgaatgggatagctctgatcaccacc 813
>gb|DQ149581.1| Xerophyta humilis PIP1 aquaporin mRNA, complete cds Length = 1262 Score = 46.1 bits (23), Expect = 0.078 Identities = 32/35 (91%) Strand = Plus / Minus Query: 294 ttgaatgggatcgctctgatgaccacctggtggta 328 ||||| ||||| ||||||||||| ||||||||||| Sbjct: 936 ttgaaggggattgctctgatgacgacctggtggta 902
>emb|AL031227.1|DMC66A1 Drosophila melanogaster cosmid 66A1 Length = 34127 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 tgaccacctggtggtagatggc 334 |||||||||||||||||||||| Sbjct: 9156 tgaccacctggtggtagatggc 9135 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 tgaccacctggtggtagatggc 334 |||||||||||||||||||||| Sbjct: 5054 tgaccacctggtggtagatggc 5033
>gb|AC023747.4| Drosophila melanogaster X BAC RP98-38L1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167097 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 tgaccacctggtggtagatggc 334 |||||||||||||||||||||| Sbjct: 34675 tgaccacctggtggtagatggc 34654
>ref|NM_131946.3| Drosophila melanogaster CG12184-RA (CG12184), mRNA Length = 3292 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 tgaccacctggtggtagatggc 334 |||||||||||||||||||||| Sbjct: 2313 tgaccacctggtggtagatggc 2292
>gb|AY051507.1| Drosophila melanogaster GH15731 full length cDNA Length = 2897 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 tgaccacctggtggtagatggc 334 |||||||||||||||||||||| Sbjct: 1897 tgaccacctggtggtagatggc 1876
>emb|AJ699398.2| Chenopodium rubrum mRNA for aquaporin PIP1 (PIP1 gene) Length = 1163 Score = 44.1 bits (22), Expect = 0.31 Identities = 37/42 (88%) Strand = Plus / Minus Query: 287 cttggtcttgaatgggatcgctctgatgaccacctggtggta 328 ||||| |||||||||||| |||||||| || | ||||||||| Sbjct: 969 cttggacttgaatgggatggctctgataacaatctggtggta 928
>gb|AE003431.5| Drosophila melanogaster chromosome X, section 15 of 74 of the complete sequence Length = 310993 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 313 tgaccacctggtggtagatggc 334 |||||||||||||||||||||| Sbjct: 239024 tgaccacctggtggtagatggc 239045
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 gatggcggccagcgcggcgcc 349 ||||||||||||||||||||| Sbjct: 310343 gatggcggccagcgcggcgcc 310363
>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210101 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 acatcaaacttggaagacaaa 159 ||||||||||||||||||||| Sbjct: 24157 acatcaaacttggaagacaaa 24177
>gb|AC153943.3| Mus musculus 10 BAC RP24-408O23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 171960 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 acatcaaacttggaagacaaa 159 ||||||||||||||||||||| Sbjct: 121183 acatcaaacttggaagacaaa 121203
>dbj|AB002149.1| Nicotiana excelsior mRNA for water channel protein, complete cds Length = 1064 Score = 42.1 bits (21), Expect = 1.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 288 ttggtcttgaatgggatcgctctgatgaccacctggtggta 328 |||||||||||||| || |||||||||| | ||||||||| Sbjct: 890 ttggtcttgaatggaatggctctgatgattatctggtggta 850
>ref|NM_130159.2| Arabidopsis thaliana PIP1B; water channel AT2G45960 (PIP1B) mRNA, complete cds Length = 1259 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 988 cttgaatgggatggctctgatgac 965
>ref|XM_521983.1| PREDICTED: Pan troglodytes similar to expressed sequence AI841794 (LOC466584), mRNA Length = 1269 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tgctggatttgcacaacaac 46 |||||||||||||||||||| Sbjct: 407 tgctggatttgcacaacaac 426
>ref|NM_001005210.1| Homo sapiens leucine rich repeat containing 55 (LRRC55), mRNA Length = 3797 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tgctggatttgcacaacaac 46 |||||||||||||||||||| Sbjct: 554 tgctggatttgcacaacaac 573
>gb|AF499725.1| Thellungiella halophila plasma membrane intrinsic protein 1B-like protein mRNA, complete cds Length = 833 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 671 cttgaatgggattgctctgatgac 648
>emb|AL117377.18|HSJ1037B9 Human DNA sequence from clone RP5-1037B9 on chromosome 20p12.1-13 Contains STSs, GSSs and a putative CpG island, complete sequence Length = 82183 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 cacatcaaacttggaagaca 157 |||||||||||||||||||| Sbjct: 72891 cacatcaaacttggaagaca 72872
>emb|Z17424.1|ATORFA Arabidopsis thaliana mRNA for PIP1b protein Length = 1064 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 908 cttgaatgggatggctctgatgac 885
>emb|X95640.1|BOMIPBTCP B.oleracea mRNA for transmembrane channel protein (mipB) Length = 1114 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 867 cttgaatgggatggctctgatgac 844
>emb|X95639.1|BOMIPATCP B.oleracea mRNA for transmembrane channel protein (mipA) Length = 1104 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 886 cttgaatgggatggctctgatgac 863
>gb|AY091254.1| Arabidopsis thaliana putative aquaporin protein (At2g45960) mRNA, complete cds Length = 892 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 849 cttgaatgggatggctctgatgac 826
>emb|X68293.1|ATRNATPR A.thaliana mRNA for transmembrane protein A Length = 1105 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 903 cttgaatgggatggctctgatgac 880
>gb|AY063931.1| Arabidopsis thaliana putative aquaporin, plasma membrane intrinsic protein 1B (At2g45960) mRNA, complete cds Length = 1077 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 gatggcggccagcgcggcgc 348 |||||||||||||||||||| Sbjct: 539763 gatggcggccagcgcggcgc 539782
>gb|AC182472.3| Pan troglodytes BAC clone CH251-394C9 from chromosome 19, complete sequence Length = 165954 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 catctttctttgtagcagcagctt 282 |||||||| ||||||||||||||| Sbjct: 108793 catctttcattgtagcagcagctt 108770
>dbj|AK127591.1| Homo sapiens cDNA FLJ45686 fis, clone FCBBF3012443 Length = 3797 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tgctggatttgcacaacaac 46 |||||||||||||||||||| Sbjct: 554 tgctggatttgcacaacaac 573
>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete sequence Length = 101647 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 15226 cttgaatgggatggctctgatgac 15249
>gb|AC016493.14| Homo sapiens chromosome 18, clone RP11-58G13, complete sequence Length = 163936 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ttggaagacaaattggaatt 167 |||||||||||||||||||| Sbjct: 159892 ttggaagacaaattggaatt 159873
>gb|AF141898.1|AF141898 Vitis berlandieri x Vitis rupestris putative aquaporin PIP1-2 (PIP1-2) mRNA, complete cds Length = 1154 Score = 40.1 bits (20), Expect = 4.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgaccacctggtggta 328 |||||||||||| |||||||| || | ||||||||| Sbjct: 911 cttgaatgggatggctctgattactatctggtggta 876
>ref|XM_944599.1| PREDICTED: Homo sapiens hypothetical protein LOC651325 (LOC651325), mRNA Length = 1350 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ggcggccagcgcggcgccca 351 |||||||||||||||||||| Sbjct: 1011 ggcggccagcgcggcgccca 992
>ref|XM_933141.1| PREDICTED: Homo sapiens hypothetical protein LOC645781 (LOC645781), mRNA Length = 1350 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ggcggccagcgcggcgccca 351 |||||||||||||||||||| Sbjct: 1011 ggcggccagcgcggcgccca 992
>gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, complete sequence Length = 166503 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ttggaagacaaattggaatt 167 |||||||||||||||||||| Sbjct: 50150 ttggaagacaaattggaatt 50131
>dbj|AK222086.1| Arabidopsis thaliana mRNA for aquaporin, partial cds, clone: RAFL22-84-C08 Length = 318 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 111 cttgaatgggatggctctgatgac 88
>gb|AY049238.1| Arabidopsis thaliana clone RAFL08-10-H13(R13205), mRNA sequence Length = 1913 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>gb|AF299051.1|AF299051 Brassica oleracea aquaporin PIP1b2 mRNA, complete cds Length = 1101 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 868 cttgaatgggatggctctgatgac 845
>gb|AF299050.1|AF299050 Brassica oleracea aquaporin PIP1b1 mRNA, complete cds Length = 1084 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 885 cttgaatgggatggctctgatgac 862
>emb|BX820173.1|CNS0A8G3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS86ZH06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1084 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 889 cttgaatgggatggctctgatgac 866
>emb|BX819664.1|CNS0A8JV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS13ZG09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 679 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 522 cttgaatgggatggctctgatgac 499
>emb|BX820969.1|CNS0A7WJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH87ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1036 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 894 cttgaatgggatggctctgatgac 871
>emb|BX819791.1|CNS0A7WA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1060 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 881 cttgaatgggatggctctgatgac 858
>gb|AC011500.7| Homo sapiens chromosome 19 clone CTB-60E11, complete sequence Length = 200430 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 catctttctttgtagcagcagctt 282 |||||||| ||||||||||||||| Sbjct: 139931 catctttcattgtagcagcagctt 139908
>gb|AC010336.8| Homo sapiens chromosome 19 clone CTD-3193O13, complete sequence Length = 160770 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ggcggccagcgcggcgccca 351 |||||||||||||||||||| Sbjct: 99042 ggcggccagcgcggcgccca 99023
>gb|AY048294.1| Arabidopsis thaliana At2g45960/F4I18.6 mRNA, complete cds Length = 1052 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 909 cttgaatgggatggctctgatgac 886
>emb|Z17399.1|ATORFB Arabidopsis thaliana PIP1b gene Length = 2773 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 1547 cttgaatgggatggctctgatgac 1524
>emb|AJ328109.1|HSA328109 Homo sapiens genomic sequence surrounding NotI site, clone NL4-DO24RS Length = 728 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ggcggccagcgcggcgccca 351 |||||||||||||||||||| Sbjct: 246 ggcggccagcgcggcgccca 227
>dbj|AP001786.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-176J24, complete sequences Length = 171744 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tgctggatttgcacaacaac 46 |||||||||||||||||||| Sbjct: 92890 tgctggatttgcacaacaac 92909
>gb|DQ151348.1| Petromyzon marinus clone T.D8 variable lymphocyte receptor diversity region (VLR) mRNA, partial cds Length = 534 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tgctggatttgcacaacaac 46 |||||||||||||||||||| Sbjct: 263 tgctggatttgcacaacaac 282
>gb|AF004293.1|AF004293 Brassica rapa aquaporin (MOD) mRNA, complete cds Length = 900 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 867 cttgaatgggatggctctgatgac 844
>dbj|AB030695.1| Raphanus sativus PAQ1b mRNA for plasma membrane aquaporin 1b, complete cds Length = 1053 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cttgaatgggatcgctctgatgac 316 |||||||||||| ||||||||||| Sbjct: 870 cttgaatgggatggctctgatgac 847 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,397,179 Number of Sequences: 3902068 Number of extensions: 3397179 Number of successful extensions: 68313 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68063 Number of HSP's gapped (non-prelim): 250 length of query: 360 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 338 effective length of database: 17,147,199,772 effective search space: 5795753522936 effective search space used: 5795753522936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)