>TAGAP_HUMAN (Q8N103) T-cell activation Rho GTPase-activating protein (T-cell|
           activation GTPase-activating protein)
          Length = 731

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +1

Query: 55  FLTQNLKIHMPKNIPVHSSQTSTDHAEHHGHSHRAKERKTSNLRVLHGDIMRNK---FSS 225
           FL  N      +NIPVHSS TS D  EH   S  +  +  S       D+  N     SS
Sbjct: 268 FLIDNCFEIFGENIPVHSSITSDDSLEHTDSSDVSTLQNDSAYDSNDPDVESNSSSGISS 327

Query: 226 PSR 234
           PSR
Sbjct: 328 PSR 330

>UNC51_CAEEL (Q23023) Serine/threonine-protein kinase unc-51 (EC 2.7.11.1)|
           (Uncoordinated protein 51)
          Length = 856

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +1

Query: 94  IPVHSSQTSTDHAEHHGHSHRAKERKTSN---LRVLHGDIM--RNKFSSPSRDQLHSF*S 258
           +P  SS T +  +  H H H+ ++   S+    R+   D +  R     P+   +     
Sbjct: 413 VPSSSSPTGSAVSAQHQHQHQQQQEPASSPVVQRIERPDQLPRRTTLQDPNAHDIERMTM 472

Query: 259 PNPCILICTSS 291
           PNP  ++C SS
Sbjct: 473 PNPTFVVCGSS 483

>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor|
           (PSI-F)
          Length = 165

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +2

Query: 113 KRAQITRNTTAIAIEPRSGKLQTYEFYTGTLC 208
           +RAQ+ RNTTA   +P SGK + +E Y+  LC
Sbjct: 39  QRAQVARNTTA---DPESGK-KRFERYSQALC 66

>ODP2_HUMAN (P10515) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex, mitochondrial precursor
           (EC 2.3.1.12) (Pyruvate dehydrogenase complex E2
           subunit) (PDCE2) (E2) (Dihydrolipoamide
           S-acetyltransferase component
          Length = 614

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 125 ITRNTTAIAIEPRSGKLQTYEFYTGTLCVTN 217
           I  +  ++A + R GKLQ +EF  GT  ++N
Sbjct: 504 IANDVVSLATKAREGKLQPHEFQGGTFTISN 534

>ODP2_RAT (P08461) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex (EC 2.3.1.12) (E2)
           (Dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase complex) (PDC-E2) (70 kDa
           mitochondrial autoantigen of
          Length = 555

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 125 ITRNTTAIAIEPRSGKLQTYEFYTGTLCVTN 217
           I  +  ++A + R GKLQ +EF  GT  ++N
Sbjct: 445 IASDVVSLASKAREGKLQPHEFQGGTFTISN 475

>ICAL_MOUSE (P51125) Calpastatin (Calpain inhibitor)|
          Length = 788

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 85  PKNIPVHSSQTSTDHAEHHGHSHRAKERKTS 177
           PKN+P H+S T + HA       R+ E+  S
Sbjct: 141 PKNLPKHTSSTGSKHAHKEKALSRSNEQMVS 171

>TOP1_XENLA (P41512) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 829

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = +1

Query: 79  HMPKNIPVHSSQTSTDHAEHHGHSHRAKER---KTSNLRVLHGDI---MRNKFSSPSR 234
           H  K++  H  +    H +   H HR K+R   K   ++   G +     N FSSP R
Sbjct: 121 HKEKDVEKHKEKDVEKHRDGEKHKHRDKDREKKKEEKMKSSSGGVKVKKENGFSSPVR 178

>DYHC_DROME (P37276) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4639

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = -3

Query: 230  DGDENLLRIMSPCKTRKFEVF------RSLALWLWPWCSA*SVLV 114
            DGDE+ + ++ P K ++ EV       R +AL L P+ SA  ++V
Sbjct: 2375 DGDEDFVGVIKPAKDKEEEVSPSLQVQRDIALLLLPFFSADGIVV 2419

>YN78_YEAST (P53820) Hypothetical 6.0 kDa protein in COS1 5'region|
          Length = 52

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 76  IHMPKNIPVHSSQTSTDHAEHHGHSH 153
           I++P   P H + T T H   H H+H
Sbjct: 17  IYIPTPTPTHHTHTPTPHPHPHTHTH 42

>CZCI_RALME (Q44009) Cobalt-zinc-cadmium resistance protein czcI precursor|
           (Cation efflux system protein czcI)
          Length = 115

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 103 HSSQTSTDHAEHHGHSHRAKERKT 174
           H   T+T H  HH H H+  E KT
Sbjct: 28  HEKATATWHLGHHEHRHQQPEGKT 51

>PTLCB_STAHJ (Q4L869) PTS system lactose-specific EIICB component (EIICB-Lac)|
           (EII-Lac) [Includes: Lactose permease IIC component (PTS
           system lactose-specific EIIC component);
           Lactose-specific phosphotransferase enzyme IIB component
           (EC 2.7.1.69) (PTS sys
          Length = 583

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 52  FFLTQNLKIHMPKNIPVHSSQTSTD 126
           FF+ +N+ I MPK +P + SQ   D
Sbjct: 155 FFIKRNITIKMPKEVPPNISQVFKD 179

>LECN_PEA (P16270) Nonseed lectin precursor|
          Length = 265

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 67  NLKIHMPKNIPVHSSQTSTDHAEHHGHSHRAKERKTSNLRVLHGDIM 207
           +LK  +PK++ V  S TST    H+ HS       TSNL    G+I+
Sbjct: 220 DLKAVLPKDVSVGFSATSTIAVSHNIHSWSF----TSNLEATTGNIV 262

>DAF_CAVPO (Q60401) Complement decay-accelerating factor precursor (CD55|
           antigen) [Contains: Complement decay-accelerating
           factor, GPI-anchored isoform]
          Length = 507

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 160 WLYGYGRGVPRDLCSFGWNELGCFW 86
           +LYG G GVP  +CS G   LG +W
Sbjct: 396 FLYGVGVGVPVIVCSLG---LGVYW 417

>PTLCB_STAES (Q8CNF7) PTS system lactose-specific EIICB component (EIICB-Lac)|
           (EII-Lac) [Includes: Lactose permease IIC component (PTS
           system lactose-specific EIIC component);
           Lactose-specific phosphotransferase enzyme IIB component
           (EC 2.7.1.69) (PTS sys
          Length = 582

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 52  FFLTQNLKIHMPKNIPVHSSQTSTD 126
           FF+ +N+ I MPK +P + SQ   D
Sbjct: 155 FFVKRNITIKMPKEVPPNISQVFKD 179

>PTLCB_STAEQ (Q5HM40) PTS system lactose-specific EIICB component (EIICB-Lac)|
           (EII-Lac) [Includes: Lactose permease IIC component (PTS
           system lactose-specific EIIC component);
           Lactose-specific phosphotransferase enzyme IIB component
           (EC 2.7.1.69) (PTS sys
          Length = 582

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 52  FFLTQNLKIHMPKNIPVHSSQTSTD 126
           FF+ +N+ I MPK +P + SQ   D
Sbjct: 155 FFVKRNITIKMPKEVPPNISQVFKD 179

>RPN2_ASHGO (Q75CF3) 26S proteasome regulatory subunit RPN2|
          Length = 930

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 125 ITRNTTAIAIEPRSGKLQTYEFYTGTLCVTNFHRHLEISYILSKVL 262
           +T   T    EP   KL TY     T  V+N H  + I Y L  +L
Sbjct: 161 VTNILTQQTSEPNMLKLITYVLIAATTTVSNTHFKINILYALFDIL 206

>PACC_ASPFU (Q4WY67) pH-response transcription factor pacC/RIM101|
          Length = 676

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +1

Query: 85  PKNIPVHSSQTSTDHAEHHGH----SHRAKERKTSNLRVLHGDIMRNKFSSPSRDQLHSF 252
           P + P + S  +  +A +HGH    S+ +K+R    L    GD+ R +F       LHS+
Sbjct: 227 PPHQPSNPSYGNVYYALNHGHDGHASYESKKRGYDALNEFFGDLKRRQF------DLHSY 280

>YKD1_CAEEL (Q03560) Hypothetical protein B0464.2 in chromosome III|
          Length = 1150

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 100 VHSSQTSTDHAEHHGHSHRAKERKTSNLRVLHGDIMRNKFSSPSRDQL 243
           ++ S    + AEHH    RAKER    L    G ++  + S+P +  L
Sbjct: 480 LYMSMKQYEKAEHH--FKRAKERLEEQLNTDEGSLLLERRSAPEKSHL 525

>PACC_ASPGI (Q5XL24) pH-response transcription factor pacC/RIM101|
          Length = 678

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 64  QNLKIHMPKNIPVHSSQTSTDHAEHHGH----SHRAKERKTSNLRVLHGDIMRNKFSSPS 231
           Q  + H P   P + S  +  +A +HGH    S+ +K+R    L    GD+ R +F    
Sbjct: 224 QYYQAHPPPQ-PANPSYGNVYYALNHGHDGHASYESKKRGYDALNEFFGDLKRRQF---- 278

Query: 232 RDQLHSF 252
              LHS+
Sbjct: 279 --DLHSY 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,786,689
Number of Sequences: 219361
Number of extensions: 1135527
Number of successful extensions: 3810
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3772
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)