ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467558.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
2ref|XM_506948.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 1e-06
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
4dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
5dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
6dbj|AK104276.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
7dbj|AK071759.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
8gb|AC104868.8| Mus musculus chromosome 1, clone RP24-532K6, comp... 42 1.4
9emb|AL808019.6| Zebrafish DNA sequence from clone CH211-258D20 i... 42 1.4
10emb|AL512592.14| Human DNA sequence from clone RP11-35D6 on chro... 40 5.4
11ref|XM_502601.1| Yarrowia lipolytica CLIB122, YALI0D09042g predi... 40 5.4
12gb|AC055758.23| Homo sapiens 3 BAC RP11-88H10 (Roswell Park Canc... 40 5.4
13gb|AC103853.2| Homo sapiens chromosome 8, clone RP11-642D21, com... 40 5.4
14dbj|AP005354.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.4
15emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 5.4
16dbj|AB086015.1| Acetobacter pasteurianus genes for ubiquinol oxi... 40 5.4 
>ref|XM_467558.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1454

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                        
Query: 278  tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 337
            |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || 
Sbjct: 1391 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 1332

                                       
Query: 338  gtgcacaaaacctggccttgttttgag 364
            ||||||||||||| ||| |||| ||||
Sbjct: 1331 gtgcacaaaacctagccctgttctgag 1305
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>ref|XM_506948.1| PREDICTED Oryza sativa (japonica cultivar-group), P0685G12.41 mRNA
          Length = 1611

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                        
Query: 278  tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 337
            |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || 
Sbjct: 1390 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 1331

                                       
Query: 338  gtgcacaaaacctggccttgttttgag 364
            ||||||||||||| ||| |||| ||||
Sbjct: 1330 gtgcacaaaacctagccctgttctgag 1304
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                            
Query: 278      tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 337
                |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || 
Sbjct: 30158467 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 30158526

                                           
Query: 338      gtgcacaaaacctggccttgttttgag 364
                ||||||||||||| ||| |||| ||||
Sbjct: 30158527 gtgcacaaaacctagccctgttctgag 30158553
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>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0685G12
          Length = 149155

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                          
Query: 278    tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 337
              |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || 
Sbjct: 138064 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 138123

                                         
Query: 338    gtgcacaaaacctggccttgttttgag 364
              ||||||||||||| ||| |||| ||||
Sbjct: 138124 gtgcacaaaacctagccctgttctgag 138150
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>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_G07
          Length = 93240

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                         
Query: 278   tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 337
             |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || 
Sbjct: 31171 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 31230

                                        
Query: 338   gtgcacaaaacctggccttgttttgag 364
             ||||||||||||| ||| |||| ||||
Sbjct: 31231 gtgcacaaaacctagccctgttctgag 31257
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>dbj|AK104276.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A01, full
            insert sequence
          Length = 1454

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                        
Query: 278  tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 337
            |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || 
Sbjct: 1391 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 1332

                                       
Query: 338  gtgcacaaaacctggccttgttttgag 364
            ||||||||||||| ||| |||| ||||
Sbjct: 1331 gtgcacaaaacctagccctgttctgag 1305
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>dbj|AK071759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C03, full
            insert sequence
          Length = 1611

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                        
Query: 278  tatgcacaagcagtatattattcccaaatcagattgttttactgcggtagtctgtcgttg 337
            |||||||| | |||||||||||| || | |||| |||||||| || |||| ||||| || 
Sbjct: 1390 tatgcacacgtagtatattattctcacagcagactgttttacagcagtagactgtcctta 1331

                                       
Query: 338  gtgcacaaaacctggccttgttttgag 364
            ||||||||||||| ||| |||| ||||
Sbjct: 1330 gtgcacaaaacctagccctgttctgag 1304
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>gb|AC104868.8| Mus musculus chromosome 1, clone RP24-532K6, complete sequence
          Length = 182376

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    aaacatcccagttcattccag 110
             |||||||||||||||||||||
Sbjct: 29908 aaacatcccagttcattccag 29928
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>emb|AL808019.6| Zebrafish DNA sequence from clone CH211-258D20 in linkage group 7
             Contains a gene for a novel actinin and four CpG islands,
             complete sequence
          Length = 159698

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    aaatccacatgcccaaaaaca 94
             |||||||||||||||||||||
Sbjct: 31880 aaatccacatgcccaaaaaca 31900
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>emb|AL512592.14| Human DNA sequence from clone RP11-35D6 on chromosome 6 Contains part
             of a novel gene (FLJ00197), complete sequence
          Length = 60858

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 86    ccaaaaacatcccagttcattcca 109
             |||||||||||||||||| |||||
Sbjct: 13155 ccaaaaacatcccagttctttcca 13178
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>ref|XM_502601.1| Yarrowia lipolytica CLIB122, YALI0D09042g predicted mRNA
          Length = 1386

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 agttcatggccttgtagcac 402
           ||||||||||||||||||||
Sbjct: 934 agttcatggccttgtagcac 915
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>gb|AC055758.23| Homo sapiens 3 BAC RP11-88H10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 173456

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   aaatcagattgttttactgc 322
             ||||||||||||||||||||
Sbjct: 66527 aaatcagattgttttactgc 66546
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>gb|AC103853.2| Homo sapiens chromosome 8, clone RP11-642D21, complete sequence
          Length = 178736

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   ttctttctaaagtcctaacc 265
             ||||||||||||||||||||
Sbjct: 71161 ttctttctaaagtcctaacc 71142
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>dbj|AP005354.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1159C3, complete
              sequence
          Length = 133276

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    ttctttctaaagtcctaacc 265
              ||||||||||||||||||||
Sbjct: 128472 ttctttctaaagtcctaacc 128491
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 383     agttcatggccttgtagcac 402
               ||||||||||||||||||||
Sbjct: 1150198 agttcatggccttgtagcac 1150217
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>dbj|AB086015.1| Acetobacter pasteurianus genes for ubiquinol oxidase subunits II, I,
            III, IV, complete cds, strain:NCI 1193
          Length = 3860

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   aatccacatgcccaaaaaca 94
            ||||||||||||||||||||
Sbjct: 2687 aatccacatgcccaaaaaca 2706


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,447,514
Number of Sequences: 3902068
Number of extensions: 3447514
Number of successful extensions: 56986
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56939
Number of HSP's gapped (non-prelim): 47
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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