ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart09f06 |
|---|---|
| Clone Library Name | barley_pub |
>AMY1_HORVU (P00693) Alpha-amylase type A isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (AMY1) (Low pI alpha-amylase) Length = 438 Score = 172 bits (435), Expect = 5e-43 Identities = 85/85 (100%), Positives = 85/85 (100%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP Sbjct: 352 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 411 Query: 276 AGFVTSAHGNDYAVWEKNGAAATLQ 202 AGFVTSAHGNDYAVWEKNGAAATLQ Sbjct: 412 AGFVTSAHGNDYAVWEKNGAAATLQ 436
>AMC2_ORYSA (P27941) Alpha-amylase isozyme C2 precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 445 Score = 129 bits (325), Expect = 3e-30 Identities = 60/82 (73%), Positives = 73/82 (89%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+WG K+QIAALVA+R+RNG+TATS+LKI++H+ DAYVAEIDGKVV+KIGSRYDV ++IP Sbjct: 351 FDWGLKEQIAALVAVRQRNGVTATSSLKIMLHDADAYVAEIDGKVVMKIGSRYDVSSLIP 410 Query: 276 AGFVTSAHGNDYAVWEKNGAAA 211 GF +AHGN YAVWEK AAA Sbjct: 411 PGFHLAAHGNGYAVWEKIAAAA 432
>AM2A_ORYSA (P27935) Alpha-amylase isozyme 2A precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 445 Score = 129 bits (325), Expect = 3e-30 Identities = 60/82 (73%), Positives = 73/82 (89%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+WG K+QIAALVA+R+RNG+TATS+LKI++H+ DAYVAEIDGKVV+KIGSRYDV ++IP Sbjct: 351 FDWGLKEQIAALVAVRQRNGVTATSSLKIMLHDADAYVAEIDGKVVMKIGSRYDVSSLIP 410 Query: 276 AGFVTSAHGNDYAVWEKNGAAA 211 GF +AHGN YAVWEK AAA Sbjct: 411 PGFHLAAHGNGYAVWEKIAAAA 432
>AMY2_HORVU (P04063) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (AMY2-2) (High pI alpha-amylase) Length = 427 Score = 102 bits (254), Expect = 5e-22 Identities = 46/77 (59%), Positives = 60/77 (77%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+WG K++I LV++R R+GI S L+I+ + D Y+AEIDGKV+VK+G RYDVG +IP Sbjct: 350 FDWGLKEEIDRLVSVRTRHGIHNESKLQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIP 409 Query: 276 AGFVTSAHGNDYAVWEK 226 GF +AHGNDYAVWEK Sbjct: 410 GGFKVAAHGNDYAVWEK 426
>AM3E_ORYSA (P27934) Alpha-amylase isozyme 3E precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 437 Score = 100 bits (250), Expect = 1e-21 Identities = 47/79 (59%), Positives = 54/79 (68%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+W + +IA L IR RNGI A S L IL EGD YVA IDGKV+ K+G RYD G +IP Sbjct: 349 FDWNLQHEIATLAEIRSRNGIHAESTLDILKAEGDIYVAMIDGKVITKLGPRYDAGGIIP 408 Query: 276 AGFVTSAHGNDYAVWEKNG 220 + F AHGNDY VWEK G Sbjct: 409 SDFHVVAHGNDYCVWEKEG 427
>AMY6_HORVU (P04750) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clones GRAMY56 and 963) Length = 429 Score = 100 bits (249), Expect = 2e-21 Identities = 46/77 (59%), Positives = 59/77 (76%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+WG K++I LV+IR R GI + S L+I+ + D Y+AEI+GKV+VK+G RYDVG +IP Sbjct: 352 FDWGLKEEIDRLVSIRTRQGIHSESKLQIMEADADLYLAEIEGKVIVKLGPRYDVGHLIP 411 Query: 276 AGFVTSAHGNDYAVWEK 226 GF AHGNDYAVWEK Sbjct: 412 EGFKVVAHGNDYAVWEK 428
>AMY4_HORVU (P04748) Alpha-amylase type B isozyme (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clone 103) (Fragment) Length = 153 Score = 100 bits (248), Expect = 2e-21 Identities = 46/77 (59%), Positives = 60/77 (77%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+WG K++I LV++R R+GI S L+I+ + D Y+AEIDGKV+VK+G RYDVG +IP Sbjct: 76 FDWGPKEEIDRLVSVRTRHGIHNESKLQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIP 135 Query: 276 AGFVTSAHGNDYAVWEK 226 GF +AHGNDYAVWEK Sbjct: 136 GGFEGAAHGNDYAVWEK 152
>AM3D_ORYSA (P27933) Alpha-amylase isozyme 3D precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 436 Score = 97.4 bits (241), Expect = 2e-20 Identities = 44/77 (57%), Positives = 58/77 (75%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+W K +I AL AIR+RNGI A S L+I++ + DAYVA +D KV+VKIG+RYDVG +P Sbjct: 349 FDWNLKQEITALAAIRERNGINAGSKLRIVVADADAYVAVVDEKVMVKIGTRYDVGNAVP 408 Query: 276 AGFVTSAHGNDYAVWEK 226 + F + HG DY+VWEK Sbjct: 409 SDFHQTVHGKDYSVWEK 425
>AM3C_ORYSA (P27939) Alpha-amylase isozyme 3C precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 437 Score = 97.4 bits (241), Expect = 2e-20 Identities = 45/79 (56%), Positives = 56/79 (70%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+W K +I+ L A+R RNGI S L IL +GD YVA ID KV+ KIG+RYDVG +IP Sbjct: 350 FDWNLKQEISTLAAVRSRNGIHPGSKLNILAADGDVYVAMIDDKVITKIGTRYDVGNLIP 409 Query: 276 AGFVTSAHGNDYAVWEKNG 220 + F AHGN+Y VWEK+G Sbjct: 410 SDFHVVAHGNNYCVWEKSG 428
>AM3B_ORYSA (P27937) Alpha-amylase isozyme 3B precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 438 Score = 97.1 bits (240), Expect = 2e-20 Identities = 45/79 (56%), Positives = 56/79 (70%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+W K +I+ L A+R RN I S LKIL EGD YVA ID KV+ KIG+RYDVG +IP Sbjct: 350 FDWNLKQEISTLAAVRSRNEIHPGSKLKILAAEGDVYVAMIDDKVITKIGTRYDVGNLIP 409 Query: 276 AGFVTSAHGNDYAVWEKNG 220 + F AHGN+Y +WEK+G Sbjct: 410 SDFHVVAHGNNYCIWEKSG 428
>AMY5_HORVU (P04749) Alpha-amylase type B isozyme (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clone 168) (Fragment) Length = 135 Score = 96.3 bits (238), Expect = 3e-20 Identities = 44/77 (57%), Positives = 59/77 (76%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+WG K++I LV++ R+GI + S L+I+ + D +AEIDGKV+VK+G RYDVG +IP Sbjct: 58 FDWGPKEEIDRLVSVSTRHGIHSESKLQIIEADADLCLAEIDGKVIVKLGPRYDVGNLIP 117 Query: 276 AGFVTSAHGNDYAVWEK 226 GF +AHGNDYAVWEK Sbjct: 118 GGFEVAAHGNDYAVWEK 134
>AM3A_ORYSA (P27932) Alpha-amylase isozyme 3A precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 440 Score = 96.3 bits (238), Expect = 3e-20 Identities = 45/79 (56%), Positives = 55/79 (69%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+W K +I AL A RKRNGI A S L++L E D YVA +D +V+ KIG R DVG +IP Sbjct: 352 FDWNLKQEINALAATRKRNGINAGSKLRVLAAESDMYVAMVDERVITKIGPRIDVGNIIP 411 Query: 276 AGFVTSAHGNDYAVWEKNG 220 + F AHGNDY VWEK+G Sbjct: 412 SDFHIVAHGNDYCVWEKSG 430
>AMY3_WHEAT (P08117) Alpha-amylase AMY3 precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 413 Score = 94.0 bits (232), Expect = 2e-19 Identities = 46/80 (57%), Positives = 57/80 (71%), Gaps = 1/80 (1%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVG-AVI 280 F+W K +I AL +R RNGI S L IL EGD YVA+I GKV+ KIGSRY++G VI Sbjct: 333 FDWKLKQEITALATVRSRNGIHPGSTLDILKAEGDLYVAKIGGKVITKIGSRYNIGDNVI 392 Query: 279 PAGFVTSAHGNDYAVWEKNG 220 P+GF +A GN+Y VWEK+G Sbjct: 393 PSGFKIAAKGNNYCVWEKSG 412
>AMY1_ORYSA (P17654) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 434 Score = 94.0 bits (232), Expect = 2e-19 Identities = 43/77 (55%), Positives = 55/77 (71%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+WG K++I LV+IR R GI S L+I+ + D Y+AEIDGKV+ KIG RYDV +IP Sbjct: 357 FDWGLKEEIERLVSIRNRQGIHPASELRIMEADSDLYLAEIDGKVITKIGPRYDVEHLIP 416 Query: 276 AGFVTSAHGNDYAVWEK 226 GF AHG+ YA+WEK Sbjct: 417 EGFQVVAHGDGYAIWEK 433
>AMYA_VIGMU (P17859) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 421 Score = 89.4 bits (220), Expect = 4e-18 Identities = 41/76 (53%), Positives = 54/76 (71%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIP 277 F+WG K+QIA L +IR RNGI S +KI+ EGD YVA+ID K++VKIG + D+G +IP Sbjct: 346 FDWGLKEQIAKLSSIRLRNGINEKSTVKIMASEGDLYVAKIDNKIMVKIGPKMDLGNLIP 405 Query: 276 AGFVTSAHGNDYAVWE 229 + + G DYAVWE Sbjct: 406 SNLHVATSGQDYAVWE 421
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 32.3 bits (72), Expect = 0.59 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = -3 Query: 456 FNWGFKDQIAALVAIRKRNGI 394 F+WG KD+I LV+IR R GI Sbjct: 315 FDWGLKDEIERLVSIRNRQGI 335
>CP4F3_HUMAN (Q08477) Cytochrome P450 4F3 (EC 1.14.13.30) (CYPIVF3)| (Leukotriene-B(4) omega-hydroxylase) (Leukotriene-B(4) 20-monooxygenase) (Cytochrome P450-LTB-omega) Length = 520 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +1 Query: 208 CCRGTVLLPDGVIV---AVCRGHEPGRDHRPDVVPGPDLH 318 CC ++LPDG ++ +C G H P V P P+++ Sbjct: 401 CCTQDIVLPDGRVIPKGIICLISVFGTHHNPAVWPDPEVY 440
>EFTS_RALSO (Q8XZJ0) Elongation factor Ts (EF-Ts)| Length = 292 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -3 Query: 447 GFKDQIAALVAIRKRNGITATSALKILMHEGDAYVAEIDGKVVVKIGSRYDV 292 GF ++IA L+A + + A SAL I GD V + +++ KIG + Sbjct: 91 GFANEIAKLIATQNPADVAALSALSI----GDETVEAVRTRLIGKIGENMTI 138
>CP4F6_RAT (P51871) Cytochrome P450 4F6 (EC 1.14.14.1) (CYPIVF6)| Length = 537 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +1 Query: 208 CCRGTVLLPDGVIVA---VCRGHEPGRDHRPDVVPGPDLHH 321 CC ++LPDG ++ +C G H P V P P++++ Sbjct: 401 CCSQDIVLPDGRVIPKGNICVISIFGVHHNPSVWPDPEVYN 441
>CP4F1_RAT (P33274) Cytochrome P450 4F1 (EC 1.14.14.1) (CYPIVF1) (P450-A3)| Length = 524 Score = 28.9 bits (63), Expect = 6.6 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +1 Query: 208 CCRGTVLLPDGVIV---AVCRGHEPGRDHRPDVVPGPDLHH 321 CC +LLPDG + +C G H P V P P++++ Sbjct: 401 CCTQDILLPDGRTIPKGIICLISIFGIHHNPSVWPDPEVYN 441
>CP4FE_MOUSE (Q9EP75) Cytochrome P450 4F14 (EC 1.14.13.30) (Leukotriene-B4| omega-hydroxylase) (Leukotriene-B4 20-monooxygenase) (Cytochrome P450-LTB-omega) (Cyp4f-14) Length = 524 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = +1 Query: 208 CCRGTVLLPDGVIV---AVCRGHEPGRDHRPDVVPGPDLH 318 CC +LLPDG + +C G H P V P P+++ Sbjct: 401 CCTQDILLPDGRTIPKGIICLISIFGIHHNPSVWPDPEVY 440
>PALH_BOTCI (Q5V9L7) pH-response regulator protein palH/RIM21| Length = 742 Score = 28.5 bits (62), Expect = 8.6 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 8/78 (10%) Frame = +2 Query: 206 SVAAAPFFSQTA*SLPCAEVTNPAGIT-----APTSYLD---PIFTTTLPSISAT*ASPS 361 S+ A+ +F+ T ++ E T A I PTS++D P + +T+P+ A A+ Sbjct: 37 SLGASEYFTLTTNAIFNPECTGTADIVLTGAGTPTSFVDLRDPFYASTIPACYALAATTV 96 Query: 362 CMRIFRALVAVMPLRFLI 415 + ++ + P FL+ Sbjct: 97 IAYMLVIMLLITPRTFLV 114
>RPOC2_SYNEL (Q8DL57) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1324 Score = 28.5 bits (62), Expect = 8.6 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -3 Query: 411 RKRNGITATSALK---ILMHEGDAYVAEIDGKVVVKIGSRYDVGAVIPAGFVTSAHG 250 R R G T A K I + G+ Y + VVK G R + GAV+ V + HG Sbjct: 462 RDRQGTTTRIAPKGGLIWVLSGEVYNLPPGAEPVVKNGDRIEAGAVLAETTVKTEHG 518 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,080,863 Number of Sequences: 219361 Number of extensions: 1023245 Number of successful extensions: 2956 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2902 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2953 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
