ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart09f05 |
|---|---|
| Clone Library Name | barley_pub |
>ATG26_NEUCR (Q7S1I0) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)| (Autophagy-related protein 26) Length = 1553 Score = 32.3 bits (72), Expect = 0.53 Identities = 27/99 (27%), Positives = 39/99 (39%) Frame = +3 Query: 45 EDDDHLHISFQHTGMAFSTPAHPRTVKNQDPVHDGLTKQCDAPNKH*RRSELASDEGEFN 224 ED+D + H M F+ P T +N++ G K S FN Sbjct: 145 EDEDDVP---NHMAMTFAGPGIKGTARNRETA--GTVKSL-------------SQTVVFN 186 Query: 225 MPPEVSSARPIPVLFHQQQWPRRKIWSVTPSLSRGCSRH 341 PP ++ P H+++ P K+ PSLSR S H Sbjct: 187 KPPASATVDAGPSNIHRRRLPGHKLLQSVPSLSRLSSSH 225
>FPPS2_LUPAL (P49352) Farnesyl pyrophosphate synthetase 2 (FPP synthetase 2)| (FPS 2) (Farnesyl diphosphate synthetase 2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 342 Score = 32.0 bits (71), Expect = 0.70 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = -1 Query: 370 EVHVSSRLG*CLEHPRDRLGVTDQIF-----RRGHCCWWNKTGIGLAELTSGGMLNS 215 E+ ++S LG C+E + V D I RRGH CW+ +G+ G +L + Sbjct: 71 EIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGHPCWFRVPKVGMIAPNDGVVLRN 127
>FPPS2_ARATH (Q43315) Farnesyl pyrophosphate synthetase 2 (FPP synthetase 2)| (FPS 2) (Farnesyl diphosphate synthetase 2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 342 Score = 31.6 bits (70), Expect = 0.91 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = -1 Query: 370 EVHVSSRLG*CLEHPRDRLGVTDQIF-----RRGHCCWWNKTGIGLAELTSGGMLNS 215 E +S LG C+E + V D I RRG CW+ K +G+ + G +L + Sbjct: 71 ETFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRKPKVGMIAINDGILLRN 127
>FPPS_HUMAN (P14324) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 353 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Frame = -1 Query: 349 LG*CLEHPRDRLGVTDQIF-----RRGHCCWWNKTGIGLAELTSGGMLNS 215 +G C+E + V D I RRG CW+ K G+GL + +L + Sbjct: 88 VGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEA 137
>FPPS_CHICK (P08836) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 367 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Frame = -1 Query: 349 LG*CLEHPRDRLGVTDQIF-----RRGHCCWWNKTGIGLAELTSGGMLNS 215 +G C+E + V D I RRG CW+ K G+GL + +L S Sbjct: 102 VGWCIELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLES 151
>FPPS_ARTAN (P49350) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 343 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = -1 Query: 370 EVHVSSRLG*CLEHPRDRLGVTDQIF-----RRGHCCWWNKTGIGLAELTSGGMLNS 215 E+ +SS LG C+E + V D I RRG CW+ +G+ G +L + Sbjct: 72 EIFLSSALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDGILLRN 128
>FPPS1_ARATH (Q09152) Farnesyl pyrophosphate synthetase 1, mitochondrial| precursor (FPP synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase 1) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 384 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = -1 Query: 370 EVHVSSRLG*CLEHPRDRLGVTDQIF-----RRGHCCWWNKTGIGLAELTSGGMLNS 215 EV +S LG C+E + V D I RRG CW+ +G+ + G +L + Sbjct: 113 EVFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPQVGMVAINDGILLRN 169
>FMT_ENTFA (Q82ZD8) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 313 Score = 30.4 bits (67), Expect = 2.0 Identities = 20/64 (31%), Positives = 26/64 (40%) Frame = +3 Query: 234 EVSSARPIPVLFHQQQWPRRKIWSVTPSLSRGCSRHHPNREETCTSAHTRLGPRCRRHRW 413 +V RP P F Q KIW+VTP ET TSA + R ++ W Sbjct: 224 QVRGMRPWPTAFTTYQGTNWKIWAVTP------------LTETTTSAPGTIIQRSKKALW 271 Query: 414 LTTG 425 + G Sbjct: 272 IACG 275
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +1 Query: 181 TRDVPN*HPTRVSSTCPRKLAPQGRSPSYSTNSNGPDGRSGRSLPAC 321 T +P HP+R S P P R PS + + P GRS+ +C Sbjct: 547 TGGMPPHHPSRPDSASPPLPLPLARPPSTPSPTLNPGSPPGRSVDSC 593
>3BP1_MOUSE (P55194) SH3 domain-binding protein 1 (3BP-1)| Length = 601 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -3 Query: 443 RVTRRPASGQPTMSTTARSKTRMCRSTRFLPVGVMSRASPR 321 R T+RPA +PTM S TR LP G +S +P+ Sbjct: 475 RKTKRPAPARPTMPPPQPSSTRSSPPAPSLPPGSVSPGTPQ 515
>FPPS_MOUSE (Q920E5) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) (Cholesterol-regulated 39 kDa protein) (CR 39) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 353 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Frame = -1 Query: 349 LG*CLEHPRDRLGVTDQIF-----RRGHCCWWNKTGIGLAELTSGGMLNS 215 +G C+E + V+D I RRG CW+ K GIGL + +L + Sbjct: 88 VGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEA 137
>RFC1_SCHPO (O60182) Probable activator 1 subunit 1 (Replication factor C| subunit 1) (Replication factor C1) Length = 934 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/59 (30%), Positives = 29/59 (49%) Frame = -3 Query: 443 RVTRRPASGQPTMSTTARSKTRMCRSTRFLPVGVMSRASPRQAGSDRPDLPSGPLLLVE 267 R TR+PA + STT++SK+ +T S+ PR + L + PL+ V+ Sbjct: 150 RATRKPAQPKAEKSTTSKSKSHTTTATTHTSRSSKSKGLPRFSDEVSQALKNVPLIDVD 208
>FPPS1_LUPAL (P49351) Farnesyl pyrophosphate synthetase 1 (FPP synthetase 1)| (FPS 1) (Farnesyl diphosphate synthetase 1) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 342 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = -1 Query: 370 EVHVSSRLG*CLEHPRDRLGVTDQIF-----RRGHCCWWNKTGIGLAELTSGGMLNS 215 E+ ++S LG C+E + V D I RRG CW+ +G+ G +L + Sbjct: 71 EIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWFRVPKVGMIAANDGVLLRN 127
>KLEG1_ECOLI (Q52282) Putative protein kleG| Length = 87 Score = 30.0 bits (66), Expect = 2.7 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 7/60 (11%) Frame = +3 Query: 282 WPRRKI-WSVTPSLSRGCSRHHPNREETCTSAHTRLGPRCRRHRWL-TTG-----RPARH 440 WP + W+ P R SR C++ TR GPR R RW+ TTG RP RH Sbjct: 20 WPSSRTGWACLPR--RCASRRRWRAGRPCST--TRTGPRFARARWIPTTGDRRGRRPQRH 75
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/59 (30%), Positives = 22/59 (37%) Frame = +1 Query: 226 CPRKLAPQGRSPSYSTNSNGPDGRSGRSLPACRGDARDITPTGRKRVLLHIRVLDRAVV 402 C R P GR ++ N P G SG C + P G +H V D VV Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCPPGLSGERCDTCSQQHQVPVPGGPVGHSIHCEVCDHCVV 2172
>KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1) Length = 523 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/61 (31%), Positives = 23/61 (37%) Frame = +1 Query: 181 TRDVPN*HPTRVSSTCPRKLAPQGRSPSYSTNSNGPDGRSGRSLPACRGDARDITPTGRK 360 TRDV + P R T RK G T GP R GR + A + T K Sbjct: 128 TRDVTSRRPARAGQTGTRKSPQDGAWARGPTTRTGPASRGGRGGATSKSTAGARSSTAGK 187 Query: 361 R 363 + Sbjct: 188 K 188
>FPPS_RAT (P05369) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) (Cholesterol-regulated 39 kDa protein) (CR 39) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 353 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Frame = -1 Query: 349 LG*CLEHPRDRLGVTDQIF-----RRGHCCWWNKTGIGLAELTSGGMLNS 215 +G C+E + V D I RRG CW+ K GIGL + +L + Sbjct: 88 VGWCVELLQAFFLVLDDIMDSSYTRRGQICWYQKPGIGLDAINDALLLEA 137
>FPPS_NEUCR (Q92250) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 347 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -1 Query: 298 IFRRGHCCWWNKTGIGLAELTSGGMLNS 215 I RRG CW+ + G+G+ + ML S Sbjct: 102 ITRRGKPCWYRQEGVGMVAINDAFMLES 129
>FPPS_GIBFU (Q92235) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 347 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -1 Query: 298 IFRRGHCCWWNKTGIGLAELTSGGMLNS 215 I RRG CW+ + G+G+ + ML S Sbjct: 102 ITRRGQPCWYRQEGVGMIAINDAFMLES 129
>LRIG1_HUMAN (Q96JA1) Leucine-rich repeats and immunoglobulin-like domains protein| 1 precursor (LIG-1) Length = 1093 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = +1 Query: 202 HPTRVSSTCPRKLAPQGRSPSYSTNSNGPDGRSGR----SLPACRGDARDITPTGRKRVL 369 HP VS + AP G P S + P + R S P C+G + P+ R+L Sbjct: 948 HPQPVSRDSAQPSAPNGPEPGGSDQEHSPHHQCSRTAAGSCPECQG---SLYPSNHDRML 1004 Query: 370 LHIRVLDRAVVD 405 ++ A +D Sbjct: 1005 TAVKKKPMASLD 1016
>FPPS_HELAN (O64905) Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS)| (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] Length = 341 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = -1 Query: 370 EVHVSSRLG*CLEHPRDRLGVTDQIF-----RRGHCCWWNKTGIGLAELTSGGMLNS 215 E+ ++S LG C+E + V D I RRG CW+ +G+ G +L + Sbjct: 71 EIFLASALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRLPKVGMIAANDGLILRN 127
>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)| Length = 640 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +1 Query: 223 TCPRKLAPQGRSPSYSTNSNGPDGRSGRSLPACRGDARDITPTGRKR 363 + P + P+ +SP+ S+N P G + + P A + PT KR Sbjct: 496 SAPPSIVPRQKSPAASSNEGAPSGSALQMPPPPGTTANPLAPTIEKR 542
>YDBH_SCHPO (Q10367) Hypothetical protein C22E12.17c in chromosome I| Length = 486 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -3 Query: 416 QPTMSTTARSKTRMCRSTRFLPVGVMSRASPRQAGSDRP 300 +P ++T +SKT S R P+ SR + + G+ RP Sbjct: 215 RPDSTSTTKSKTSSISSARARPIRASSRPTASKLGASRP 253
>PEX5_MOUSE (O09012) Peroxisomal targeting signal 1 receptor (Peroxismore| receptor 1) (Peroxisomal C-terminal targeting signal import receptor) (PTS1-BP) (Peroxin-5) (PTS1 receptor) (PXR1P) (PTS1R) Length = 639 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 441 GDAQAGQWSANDVDDSAVQDAYVQKYTFP 355 G AQA QW+A + +A+V ++T P Sbjct: 237 GGAQAEQWAAEFIQQQGTSEAWVDQFTRP 265
>NXL2_NAJNA (P25669) Long neurotoxin 2 (Toxin B)| Length = 71 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/67 (26%), Positives = 28/67 (41%) Frame = +1 Query: 163 VTHQTNTRDVPN*HPTRVSSTCPRKLAPQGRSPSYSTNSNGPDGRSGRSLPACRGDARDI 342 +T ++D PN H + C + +G+ + P R+G + C D D Sbjct: 5 ITPDITSKDCPNGHVCYTKTWCDGFCSSRGKRVDLGCAATCPTVRTGVDIQCCSTDDCDP 64 Query: 343 TPTGRKR 363 PT RKR Sbjct: 65 FPT-RKR 70
>SYP1_YEAST (P25623) Suppressor of yeast profilin deletion| Length = 870 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +1 Query: 172 QTNTRDVPN*HPTRVSSTCPRKLAPQGRSPSYSTNSN 282 Q + + PN TRVSST + + R P+YS++ + Sbjct: 369 QASITETPNNSSTRVSSTATSSIYQKQRRPTYSSSKS 405
>TSH2_MOUSE (Q68FE9) Teashirt homolog 2 (Zinc finger protein 218)| (SDCCAG33-like protein) Length = 1030 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Frame = +3 Query: 120 VKNQDPVHDGLTKQCDAPNKH*RRSELASDEGE----FNMPPEVSSARPIPVLFHQQQWP 287 VK + D + KQC + H + + EGE P E A P P L +++ Sbjct: 600 VKKETEDKDEVVKQCGKESPHEEATSFSQPEGESFSKIEPPSESRKAEPCP-LKEEEKPQ 658 Query: 288 RRKIWSVTP--SLSRGCS 335 + K + P SL+ GC+ Sbjct: 659 KEKPEPLEPVSSLTNGCA 676 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,776,641 Number of Sequences: 219361 Number of extensions: 1522455 Number of successful extensions: 3855 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3684 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3855 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
