ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart09e07 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 119 bits (299), Expect = 4e-27 Identities = 63/74 (85%), Positives = 67/74 (90%), Gaps = 1/74 (1%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDG 330 PEVIGKEIEKATSSIFPLQNV+VRKVKILKAPKFDLGKLMEVHGDY KED+G KLDRP Sbjct: 189 PEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAE 248 Query: 329 DEVIPGAEEVAAAE 288 DE + G +EVAAAE Sbjct: 249 DEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 112 bits (281), Expect = 4e-25 Identities = 56/72 (77%), Positives = 62/72 (86%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGD 327 PE IG+EIEKATSSI+PLQNV++RKVKILKAPKFD+GKLMEVHGDY EDVGVKLDRP + Sbjct: 189 PESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-AE 247 Query: 326 EVIPGAEEVAAA 291 E P A EV A Sbjct: 248 EAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 108 bits (271), Expect = 6e-24 Identities = 52/71 (73%), Positives = 59/71 (83%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGD 327 PE IG+EIEKATSSI+PLQNV++RKVKILKAPKFDLGKLMEVHGDY ED+G KLDRP + Sbjct: 189 PESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEE 248 Query: 326 EVIPGAEEVAA 294 V E + A Sbjct: 249 AVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 102 bits (255), Expect = 5e-22 Identities = 50/73 (68%), Positives = 59/73 (80%), Gaps = 1/73 (1%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDG 330 PE IG+EIEKAT I+PLQNV++RKVKILKAPKFDLGKLMEVHGDY EDVGVK+DRP Sbjct: 189 PEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPAD 248 Query: 329 DEVIPGAEEVAAA 291 + ++ E+ A Sbjct: 249 ETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 100 bits (249), Expect = 2e-21 Identities = 52/73 (71%), Positives = 59/73 (80%), Gaps = 1/73 (1%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDG 330 PE IGK+IEKAT I+PLQNV++RKVKILKAPKFDL KLMEVHGDY EDVGVK+DRP Sbjct: 190 PESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-A 248 Query: 329 DEVIPGAEEVAAA 291 DEV+ E+ A Sbjct: 249 DEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 80.1 bits (196), Expect = 3e-15 Identities = 39/55 (70%), Positives = 47/55 (85%), Gaps = 1/55 (1%) Frame = -2 Query: 506 PEVIGKEIEKATSS-IFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 345 PEVIGKEI++ S I+PLQ+ ++RKVKILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 186 PEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 78.2 bits (191), Expect = 1e-14 Identities = 39/54 (72%), Positives = 46/54 (85%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 345 PEVIG+EIE+AT SIFPLQNV VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 189 PEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 77.4 bits (189), Expect = 2e-14 Identities = 39/70 (55%), Positives = 50/70 (71%), Gaps = 9/70 (12%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDVG 354 P+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ +D G Sbjct: 189 PDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTG 248 Query: 353 VKLDRPDGDE 324 K++R DG E Sbjct: 249 AKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 77.0 bits (188), Expect = 3e-14 Identities = 38/70 (54%), Positives = 50/70 (71%), Gaps = 9/70 (12%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDVG 354 P+ +GK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ +D G Sbjct: 189 PDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTG 248 Query: 353 VKLDRPDGDE 324 K++R DG E Sbjct: 249 AKVERADGYE 258
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 76.6 bits (187), Expect = 3e-14 Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 7/68 (10%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVK 348 P+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K Sbjct: 189 PDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAK 248 Query: 347 LDRPDGDE 324 ++R DG E Sbjct: 249 VERADGYE 256
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 76.6 bits (187), Expect = 3e-14 Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 7/68 (10%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVK 348 P+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K Sbjct: 189 PDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAK 248 Query: 347 LDRPDGDE 324 ++R DG E Sbjct: 249 VERADGYE 256
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 76.6 bits (187), Expect = 3e-14 Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 7/68 (10%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVK 348 P+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K Sbjct: 189 PDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAK 248 Query: 347 LDRPDGDE 324 ++R DG E Sbjct: 249 VERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 76.6 bits (187), Expect = 3e-14 Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 7/68 (10%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVK 348 P+ IGK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K Sbjct: 189 PDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAK 248 Query: 347 LDRPDGDE 324 ++R DG E Sbjct: 249 VERADGYE 256
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 76.3 bits (186), Expect = 5e-14 Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 10/71 (14%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----------YKEDV 357 P+ +GK+IEKA SI+PL +VYVRKVK+LK PKF+LGKLME+HG+ + D Sbjct: 189 PDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDT 248 Query: 356 GVKLDRPDGDE 324 G K++R DG E Sbjct: 249 GAKVERADGYE 259
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 75.9 bits (185), Expect = 6e-14 Identities = 37/54 (68%), Positives = 47/54 (87%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 345 PEVIG+ IEKAT++I+PLQNV+VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 189 PEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 75.5 bits (184), Expect = 8e-14 Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 7/68 (10%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVK 348 P+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K Sbjct: 189 PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAK 248 Query: 347 LDRPDGDE 324 ++R DG E Sbjct: 249 VERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 75.5 bits (184), Expect = 8e-14 Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 7/68 (10%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVK 348 P+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K Sbjct: 189 PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAK 248 Query: 347 LDRPDGDE 324 ++R DG E Sbjct: 249 VERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 75.5 bits (184), Expect = 8e-14 Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 7/68 (10%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVK 348 P+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K Sbjct: 189 PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAK 248 Query: 347 LDRPDGDE 324 ++R DG E Sbjct: 249 VERADGYE 256
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 75.5 bits (184), Expect = 8e-14 Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 7/68 (10%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVK 348 P+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K Sbjct: 186 PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAK 245 Query: 347 LDRPDGDE 324 ++R DG E Sbjct: 246 VERADGYE 253
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 75.1 bits (183), Expect = 1e-13 Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 7/68 (10%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVK 348 P+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K Sbjct: 189 PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAK 248 Query: 347 LDRPDGDE 324 ++R DG E Sbjct: 249 VERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 75.1 bits (183), Expect = 1e-13 Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 7/68 (10%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVK 348 P+ IGK+IEKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K Sbjct: 189 PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAK 248 Query: 347 LDRPDGDE 324 ++R DG E Sbjct: 249 VERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 74.3 bits (181), Expect = 2e-13 Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 7/68 (10%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVK 348 P+ IGK++EKA SI+PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K Sbjct: 189 PDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAK 248 Query: 347 LDRPDGDE 324 ++R DG E Sbjct: 249 VERADGYE 256
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 72.4 bits (176), Expect = 7e-13 Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 1/64 (1%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-YKEDVGVKLDRPDG 330 PEVIG+EIEK+T +IFPLQNV++RKVK+LK PKFD G L+ +HG+ E+ G K+ Sbjct: 189 PEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGFK 248 Query: 329 DEVI 318 D V+ Sbjct: 249 DVVL 252
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 71.2 bits (173), Expect = 1e-12 Identities = 32/45 (71%), Positives = 38/45 (84%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 372 PEVI KEIE AT IFPLQN++VRKVK+LK PKFD+G LM +HG+ Sbjct: 189 PEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 71.2 bits (173), Expect = 1e-12 Identities = 32/45 (71%), Positives = 38/45 (84%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 372 PEVI KEIE AT IFPLQN++VRKVK+LK PKFD+G LM +HG+ Sbjct: 189 PEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 70.1 bits (170), Expect = 3e-12 Identities = 35/63 (55%), Positives = 45/63 (71%), Gaps = 2/63 (3%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD--YKEDVGVKLDRPD 333 P+ IGK+IEK S ++PLQ VY+RKVKI+K PK DLG+L ++HGD G K+DRPD Sbjct: 187 PDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRPD 246 Query: 332 GDE 324 E Sbjct: 247 DYE 249
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 68.6 bits (166), Expect = 9e-12 Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 8/69 (11%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGV 351 P+ IGK+IEK+ I+PL +V + KVK+LK PKFD+GKLME+HG+ + G Sbjct: 189 PDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGE 248 Query: 350 KLDRPDGDE 324 K+DR DG E Sbjct: 249 KVDRVDGYE 257
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 64.7 bits (156), Expect = 1e-10 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 8/66 (12%) Frame = -2 Query: 497 IGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLD 342 I K+IEK+ I+PL +VY+RKVK+LK P+FD+ KL+E+HGD G +D Sbjct: 195 IAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVID 254 Query: 341 RPDGDE 324 RP+G E Sbjct: 255 RPEGYE 260
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 64.3 bits (155), Expect = 2e-10 Identities = 27/45 (60%), Positives = 36/45 (80%) Frame = -2 Query: 506 PEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 372 P+ I K+IEKA ++PL +VY+RKVK+LK P+FDL LME+HGD Sbjct: 192 PDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 32.0 bits (71), Expect = 0.98 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = -2 Query: 497 IGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLME 384 + EI +A I+PL+ + K K+LK P+ +LGK +E Sbjct: 165 LANEIFEAAKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 30.8 bits (68), Expect = 2.2 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -2 Query: 497 IGKEIEKATSSIFPLQNVYVRKVKILKAPK 408 I EI K I+PL+ +RK+K+L+ P+ Sbjct: 166 IAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195
>NAL13_HUMAN (Q86W25) NACHT-, LRR- and PYD-containing protein 13| (Nucleotide-binding oligomerization domain protein 14) Length = 1043 Score = 30.8 bits (68), Expect = 2.2 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Frame = +2 Query: 14 LEITTNNTVEHKVHANIKHIWQE*TKYLVSTHNLHPESNTNKTR*LNA--G*ECRQKYSR 187 LEI + + ++HA W LV+ NLH +N ++ G K R Sbjct: 700 LEILETSKFDSRMHA-----WNSICSTLVTNENLHELDLSNSKLHASSVKGLCLALKNPR 754 Query: 188 NQPSKLTTKFTTPRWHIYHLLDKKQQNS 271 + KLT K TP W + L+ Q NS Sbjct: 755 CKVQKLTCKSVTPEWVLQDLIIALQGNS 782
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 30.0 bits (66), Expect = 3.7 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -2 Query: 497 IGKEIEKATSSIFPLQNVYVRKVKILKAPK 408 + +I + I+PL+ V + K K+LKAPK Sbjct: 167 LSNDIFQEAKKIYPLRKVEIEKTKLLKAPK 196
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 29.6 bits (65), Expect = 4.9 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -2 Query: 500 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 324 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 788 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 846 Query: 323 VIPGAEEV 300 + PG ++ Sbjct: 847 LPPGVNQL 854
>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae| Length = 199 Score = 29.6 bits (65), Expect = 4.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 Query: 497 IGKEIEKATSSIFPLQNVYVRKVKILKAPK 408 I EI K I+PL+ +RK+K+L P+ Sbjct: 167 IAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 196
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 29.6 bits (65), Expect = 4.9 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -2 Query: 500 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 324 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 808 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 866 Query: 323 VIPGAEEV 300 + PG ++ Sbjct: 867 LPPGVNQL 874
>COBQ_VIBPA (Q87HN1) Cobyric acid synthase| Length = 483 Score = 29.3 bits (64), Expect = 6.4 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%) Frame = -2 Query: 494 GKEIEKATSSIFPLQNVYVRKVKILKAPKFDL---------GKLMEVHGDYKEDVGVKLD 342 G++I+KA I P + LK+ +D GK+M + G Y+ +G +D Sbjct: 286 GEKIDKADLIILPGTKSVRDDLAYLKSQGWDKDILRHIRLGGKVMGICGGYQM-LGKTID 344 Query: 341 RPDGDEVIPGAEE 303 PDG E PG+ E Sbjct: 345 DPDGVEGEPGSSE 357
>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae| Length = 200 Score = 29.3 bits (64), Expect = 6.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 497 IGKEIEKATSSIFPLQNVYVRKVKILKAP 411 I EI K I+P++ VRK+K+L P Sbjct: 170 IASEIAKEARKIYPIKRAEVRKIKVLAEP 198
>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae| Length = 199 Score = 28.9 bits (63), Expect = 8.3 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 Query: 497 IGKEIEKATSSIFPLQNVYVRKVKILKAPK 408 I EI K I+PL+ +RK+K+L P+ Sbjct: 168 IAAEIAKEGKKIYPLKKAEIRKIKVLGEPE 197
>OAS3_HUMAN (Q9Y6K5) 2'-5'-oligoadenylate synthetase 3 (EC 2.7.7.-)| ((2-5')oligo(A) synthetase 3) (2-5A synthetase 3) (p100 OAS) (p100OAS) Length = 1087 Score = 28.9 bits (63), Expect = 8.3 Identities = 20/47 (42%), Positives = 25/47 (53%) Frame = +3 Query: 315 RNDLISIRPVKLHTNILLVVTVHLHELSQVKLRGLQDLHLADVHVLE 455 R + ++IRP KL ILLV H QV L+GL L V+ LE Sbjct: 188 RRNFVNIRPAKLKNLILLV----KHWYHQVCLQGLWKETLPPVYALE 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,555,782 Number of Sequences: 219361 Number of extensions: 1113864 Number of successful extensions: 2549 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 2483 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2545 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
