>YG5W_YEAST (P53335) Hypothetical 31.3 kDa protein in TAF145-YOR1 intergenic|
           region
          Length = 271

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 13/70 (18%)
 Frame = +3

Query: 105 GKMEGKQS-YSISLD------------GMALTEGQNLVVSWWHRTTNHCKQATTTKKKKR 245
           G++ GK+S  S  LD            G+   +G+ ++ S W   T+  +  +  KK+KR
Sbjct: 96  GRLNGKESKISEELDTQRKQKIIDGKWGIHFVKGE-VLASTWDPKTHKLRNYSNAKKRKR 154

Query: 246 NGSNNEAEED 275
            G ++E E+D
Sbjct: 155 EGDDSEDEDD 164

>POL2_GCMV (P13026) RNA2 polyprotein (P2) [Contains: P2A protein (2A);|
           Movement protein (2B-MP); Coat protein (2C-CP)]
          Length = 1324

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 84  QVDYERAGKMEGKQSYSISLDGMALTEGQNLVVSWWH 194
           Q  YER    EGK+ Y + +   A  +  +L+++WWH
Sbjct: 249 QFGYERLYNGEGKEEYWLQIP--ATDKYTDLIINWWH 283

>SYI_DEHE1 (Q3Z7P5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1014

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 28/114 (24%), Positives = 39/114 (34%), Gaps = 33/114 (28%)
 Frame = +3

Query: 108 KMEGKQSYSISLDGMALTEGQNLVVS-WW--------------HRTTNHCKQATTTKKKK 242
           K+  + +Y + LD   +T   N + S WW              HR T HC +  T+    
Sbjct: 133 KLTERIAYWVDLDNAYITMDNNYIESGWWALKQMWDKGLVYQGHRVTPHCPRCGTSLSSH 192

Query: 243 RNGSN-NEAEEDPS-----------LASPGCCGC*GWRRS------AWTSGPWT 350
                  +  EDPS           LA  G      +         AWT+ PWT
Sbjct: 193 EVAQGYKDNTEDPSVFVKFEIAKESLAKAGLAKKWAYPADKPLYLLAWTTTPWT 246

>SYI_PROAC (Q6AB89) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1114

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 19/114 (16%)
 Frame = +3

Query: 66  KSLQNVQVDYERAGKMEGKQSYSISLDGMALTEGQNLVVS-WW--------------HRT 200
           K  ++V    +   ++  +  Y +++D    T   + V S WW              HR 
Sbjct: 132 KCRESVTRHVDAFSELTERMGYWVNMDEAYWTMSPSYVESVWWGLKRIWDKGLLGEDHRV 191

Query: 201 TNHCKQATTTKKKKRNGSNNEAEEDPSL--ASPGCCGC*GWRRS--AWTSGPWT 350
             +C +  TT          + + DPS+    P   G    R     WT+ PWT
Sbjct: 192 APYCPRCGTTLSDHELAQGYQDDRDPSIYVRFPVTSGPLAGRAKLLVWTTTPWT 245

>GCSH2_AQUAE (O67573) Glycine cleavage system H protein 2|
          Length = 161

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 85 CTFCSDLYYYIRNQIIFSINQ 23
          C    DLYY I NQ+ F +N+
Sbjct: 11 CVIPKDLYYDIENQVWFKVNE 31

>IFIT2_MOUSE (Q64112) Interferon-induced protein with tetratricopeptide repeats|
           2 (IFIT-2) (Interferon-induced 54 kDa protein) (IFI-54K)
           (Glucocorticoid-attenuated response gene 39 protein)
           (GARG-39)
          Length = 472

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 116 LHFPCSFIINLYIL**FVLLYQKPDYFFHQ--SKICTPTP 3
           L + CSF+ +LYI+      Y + DY+F +  SK   P P
Sbjct: 331 LEYSCSFLADLYII---AKKYDEADYYFQKELSKDLPPGP 367

>WDR3_HUMAN (Q9UNX4) WD-repeat protein 3|
          Length = 943

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 150 MALTEGQNLVVSWWHRTTNHC 212
           + +T G++ +V WW   T HC
Sbjct: 163 LLVTSGKDTMVKWWDLDTQHC 183

>RACB_DICDI (P34148) RAS-related protein racB|
          Length = 195

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 84  QVDYERAGKMEGKQS--YSISLDGMALTEGQNLVVSWWHRTTNHCKQAT 224
           Q DY+R   +   Q+  + I    ++ T   N+   WW   T+HC   T
Sbjct: 61  QEDYDRLRPLSYPQTDVFLICFAIISQTSYTNVKSKWWPEVTHHCPNCT 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,998,033
Number of Sequences: 219361
Number of extensions: 667635
Number of successful extensions: 2007
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2006
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)