Clone Name | rbart09d12 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_195468.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1004_F02.9), mRNA Length = 360 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Minus Query: 292 cggacggcgtgccgtcgtgttgcagccgtatgacccctgttgtgtaggtgcgga 345 |||||||||||||| |||| ||||||||||| ||||| | ||||||| ||||| Sbjct: 328 cggacggcgtgccgccgtgctgcagccgtatcaccccggccgtgtaggcgcgga 275
>gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1004_F02 map C8, complete sequence Length = 116304 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Minus Query: 292 cggacggcgtgccgtcgtgttgcagccgtatgacccctgttgtgtaggtgcgga 345 |||||||||||||| |||| ||||||||||| ||||| | ||||||| ||||| Sbjct: 42375 cggacggcgtgccgccgtgctgcagccgtatcaccccggccgtgtaggcgcgga 42322
>gb|AC092172.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0014J14, complete sequence Length = 191397 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Minus Query: 292 cggacggcgtgccgtcgtgttgcagccgtatgacccctgttgtgtaggtgcgga 345 |||||||||||||| |||| ||||||||||| ||||| | ||||||| ||||| Sbjct: 11115 cggacggcgtgccgccgtgctgcagccgtatcaccccggccgtgtaggcgcgga 11062 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Plus Query: 312 tgcagccgtatgacccctgttgtgtaggtgcgga 345 ||||||||||| |||||||| ||||||| ||||| Sbjct: 143647 tgcagccgtatcacccctgtcgtgtaggagcgga 143680
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Minus Query: 292 cggacggcgtgccgtcgtgttgcagccgtatgacccctgttgtgtaggtgcgga 345 |||||||||||||| |||| ||||||||||| ||||| | ||||||| ||||| Sbjct: 7185757 cggacggcgtgccgccgtgctgcagccgtatcaccccggccgtgtaggcgcgga 7185704 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Plus Query: 312 tgcagccgtatgacccctgttgtgtaggtgcgga 345 ||||||||||| |||||||| ||||||| ||||| Sbjct: 7318286 tgcagccgtatcacccctgtcgtgtaggagcgga 7318319
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Minus Query: 292 cggacggcgtgccgtcgtgttgcagccgtatgacccctgttgtgtaggtgcgga 345 |||||||||||||| |||| ||||||||||| ||||| | ||||||| ||||| Sbjct: 7189053 cggacggcgtgccgccgtgctgcagccgtatcaccccggccgtgtaggcgcgga 7189000 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Plus Query: 312 tgcagccgtatgacccctgttgtgtaggtgcgga 345 ||||||||||| |||||||| ||||||| ||||| Sbjct: 7321585 tgcagccgtatcacccctgtcgtgtaggagcgga 7321618
>ref|NM_195495.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0014J14.29), mRNA Length = 285 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Minus Query: 312 tgcagccgtatgacccctgttgtgtaggtgcgga 345 ||||||||||| |||||||| ||||||| ||||| Sbjct: 233 tgcagccgtatcacccctgtcgtgtaggagcgga 200
>emb|AL645910.8| Mouse DNA sequence from clone RP23-173M6 on chromosome 11 Contains the 5' end of a novel gene, the Mtmr3 gene for myotubularin related protein 3 and a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, complete sequence Length = 204413 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 24 attaattaaacacagcatcaca 45 |||||||||||||||||||||| Sbjct: 76701 attaattaaacacagcatcaca 76680
>gb|AC150419.2| Branchiostoma floridae clone CH302-73J11, complete sequence Length = 185777 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Minus Query: 82 atgtctcaggagagaatagccataccagag 111 |||||||||||||||| | ||||||||||| Sbjct: 126998 atgtctcaggagagaagaaccataccagag 126969
>gb|AC129805.7| Homo sapiens 12 BAC RP11-125N22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165378 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 107 cagagtgagactgtctatcaaa 128 |||||||||||||||||||||| Sbjct: 108785 cagagtgagactgtctatcaaa 108764
>dbj|AK068630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155I02, full insert sequence Length = 876 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Minus Query: 312 tgcagccgtatgacccctgttgtgtaggtgcgga 345 ||||||||||| |||||||| ||||||| ||||| Sbjct: 620 tgcagccgtatcacccctgtcgtgtaggagcgga 587
>gb|AC007016.5|AC007016 Homo sapiens chromosome 4 clone C0478G20 map 4p16, complete sequence Length = 172568 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cacagcatcacagttgtatata 55 |||||||||||||||||||||| Sbjct: 162031 cacagcatcacagttgtatata 162052
>gb|AC128707.2| Homo sapiens 12 BAC RP11-38F22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121538 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cataccagagtgagactgtct 122 ||||||||||||||||||||| Sbjct: 57835 cataccagagtgagactgtct 57815
>gb|AC164539.4| Mus musculus chromosome 1, clone wi1-168J17, complete sequence Length = 43396 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 cagcatgtctcaggagagaa 97 |||||||||||||||||||| Sbjct: 26021 cagcatgtctcaggagagaa 26002
>gb|AC146428.3| Pan troglodytes BAC clone RP43-22M18 from 7, complete sequence Length = 194995 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 acaacatgttacatgtatgtgttt 167 ||||||| |||||||||||||||| Sbjct: 38172 acaacattttacatgtatgtgttt 38195
>ref|NM_024756.1| Homo sapiens multimerin 2 (MMRN2), mRNA Length = 3828 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cacaccctgtattctacaac 148 |||||||||||||||||||| Sbjct: 3214 cacaccctgtattctacaac 3233
>emb|CR855325.15| Zebrafish DNA sequence from clone DKEY-48K8 in linkage group 5, complete sequence Length = 198456 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cgaaagcagcacctccactt 207 |||||||||||||||||||| Sbjct: 145362 cgaaagcagcacctccactt 145343 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cgaaagcagcacctccactt 207 |||||||||||||||||||| Sbjct: 34160 cgaaagcagcacctccactt 34179
>gb|AE014302.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 2 of 3 of the complete sequence Length = 277196 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 atctttacactcccttcaac 228 |||||||||||||||||||| Sbjct: 15474 atctttacactcccttcaac 15455
>gb|AC114002.4| Mus musculus BAC clone RP23-165H7 from 12, complete sequence Length = 200112 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 caacatatgagaacatgcta 24 |||||||||||||||||||| Sbjct: 29492 caacatatgagaacatgcta 29511
>gb|AC139110.4| Danio rerio strain Tue clone CH211-154N18, complete sequence Length = 181047 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cgaaagcagcacctccactt 207 |||||||||||||||||||| Sbjct: 1029 cgaaagcagcacctccactt 1010
>gb|AC163440.3| Mus musculus chromosome 1, clone RP23-445K8, complete sequence Length = 194714 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 cagagtgagactgtctatcaaaca 130 |||||||||||||| ||||||||| Sbjct: 12111 cagagtgagactgtgtatcaaaca 12134
>emb|BX322635.6| Human DNA sequence from clone RP1-290F12 on chromosome X Contains the gene for super conserved receptor expressed in brain 3 (SREB3), the gene for cutaneous T-cell lymphoma-associated tumor antigen se20-4 (SE20-4) and two CpG islands, complete sequence Length = 66325 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 aacatgttacatgtatgtgt 165 |||||||||||||||||||| Sbjct: 58052 aacatgttacatgtatgtgt 58033
>emb|AL355807.11| Human DNA sequence from clone RP11-487A20 on chromosome 13 Contains the 5' end of the ITGBL1 gene for integrin, beta-like 1 (with EGF-like repeat domains), complete sequence Length = 149143 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 atctttacactcccttcaac 228 |||||||||||||||||||| Sbjct: 38373 atctttacactcccttcaac 38354
>gb|AC084251.13| Homo sapiens chromosome 8, clone RP11-152C15, complete sequence Length = 181400 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 cagagtgagactgtctatcaaaca 130 |||||||||||| ||||||||||| Sbjct: 154023 cagagtgagactctctatcaaaca 154046
>emb|CR407559.8| Zebrafish DNA sequence from clone CH211-283G2 in linkage group 5, complete sequence Length = 149707 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cgaaagcagcacctccactt 207 |||||||||||||||||||| Sbjct: 62751 cgaaagcagcacctccactt 62732
>gb|AF512525.1| Danio rerio cardiac troponin T (tnnt2) gene, complete cds Length = 34713 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cgaaagcagcacctccactt 207 |||||||||||||||||||| Sbjct: 20345 cgaaagcagcacctccactt 20326
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 accctgtattctacaacatg 151 |||||||||||||||||||| Sbjct: 126867 accctgtattctacaacatg 126886
>gb|BC094744.1| Homo sapiens multimerin 2, mRNA (cDNA clone MGC:104596 IMAGE:30343159), complete cds Length = 3844 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cacaccctgtattctacaac 148 |||||||||||||||||||| Sbjct: 3214 cacaccctgtattctacaac 3233
>gb|AC115870.18| Mus musculus chromosome 1, clone RP24-339L17, complete sequence Length = 186963 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 cagagtgagactgtctatcaaaca 130 |||||||||||||| ||||||||| Sbjct: 96215 cagagtgagactgtgtatcaaaca 96238
>emb|BX469889.7| Zebrafish DNA sequence from clone DKEY-156P3 in linkage group 18, complete sequence Length = 177975 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cgaaagcagcacctccactt 207 |||||||||||||||||||| Sbjct: 142854 cgaaagcagcacctccactt 142835
>dbj|AK023527.1| Homo sapiens cDNA FLJ13465 fis, clone PLACE1003493, weakly similar to ENDOTHELIAL CELL MULTIMERIN PRECURSOR Length = 3828 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cacaccctgtattctacaac 148 |||||||||||||||||||| Sbjct: 3214 cacaccctgtattctacaac 3233
>gb|AC025268.8| Homo sapiens chromosome 10 clone RP11-411A19, complete sequence Length = 149668 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cacaccctgtattctacaac 148 |||||||||||||||||||| Sbjct: 80074 cacaccctgtattctacaac 80093
>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 173810 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 tcacagttgtatatacacaa 60 |||||||||||||||||||| Sbjct: 20876 tcacagttgtatatacacaa 20857
>gb|AC073433.9|AC073433 Arabidopsis thaliana chromosome 1 BAC F19C17 genomic sequence, complete sequence Length = 117055 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 caacatgttacatgtatgtg 164 |||||||||||||||||||| Sbjct: 42382 caacatgttacatgtatgtg 42363
>emb|BX004850.11| Zebrafish DNA sequence from clone CH211-51M24 in linkage group 19, complete sequence Length = 121375 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 cgaaagcagcacctccactt 207 |||||||||||||||||||| Sbjct: 36693 cgaaagcagcacctccactt 36674
>emb|BX470166.11| Zebrafish DNA sequence from clone CH211-238N5 in linkage group 18, complete sequence Length = 117241 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cgaaagcagcacctccactt 207 |||||||||||||||||||| Sbjct: 4854 cgaaagcagcacctccactt 4873
>gb|AC138587.11| Mus musculus chromosome 9, clone RP24-160H16, complete sequence Length = 185915 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 acatatgagaacatgctattaatt 30 ||||||||| |||||||||||||| Sbjct: 89984 acatatgagcacatgctattaatt 90007 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,230,590 Number of Sequences: 3902068 Number of extensions: 3230590 Number of successful extensions: 62453 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62356 Number of HSP's gapped (non-prelim): 97 length of query: 354 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 332 effective length of database: 17,147,199,772 effective search space: 5692870324304 effective search space used: 5692870324304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)