ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_195468.1| Oryza sativa (japonica cultivar-group) hypothet... 52 0.001
2gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
3gb|AC092172.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
6ref|NM_195495.1| Oryza sativa (japonica cultivar-group) unknown ... 44 0.30
7emb|AL645910.8| Mouse DNA sequence from clone RP23-173M6 on chro... 44 0.30
8gb|AC150419.2| Branchiostoma floridae clone CH302-73J11, complet... 44 0.30
9gb|AC129805.7| Homo sapiens 12 BAC RP11-125N22 (Roswell Park Can... 44 0.30
10dbj|AK068630.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.30
11gb|AC007016.5|AC007016 Homo sapiens chromosome 4 clone C0478G20 ... 44 0.30
12gb|AC128707.2| Homo sapiens 12 BAC RP11-38F22 (Roswell Park Canc... 42 1.2
13gb|AC164539.4| Mus musculus chromosome 1, clone wi1-168J17, comp... 40 4.7
14gb|AC146428.3| Pan troglodytes BAC clone RP43-22M18 from 7, comp... 40 4.7
15ref|NM_024756.1| Homo sapiens multimerin 2 (MMRN2), mRNA 40 4.7
16emb|CR855325.15| Zebrafish DNA sequence from clone DKEY-48K8 in ... 40 4.7
17gb|AE014302.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 4.7
18gb|AC114002.4| Mus musculus BAC clone RP23-165H7 from 12, comple... 40 4.7
19gb|AC139110.4| Danio rerio strain Tue clone CH211-154N18, comple... 40 4.7
20gb|AC163440.3| Mus musculus chromosome 1, clone RP23-445K8, comp... 40 4.7
21emb|BX322635.6| Human DNA sequence from clone RP1-290F12 on chro... 40 4.7
22emb|AL355807.11| Human DNA sequence from clone RP11-487A20 on ch... 40 4.7
23gb|AC084251.13| Homo sapiens chromosome 8, clone RP11-152C15, co... 40 4.7
24emb|CR407559.8| Zebrafish DNA sequence from clone CH211-283G2 in... 40 4.7
25gb|AF512525.1| Danio rerio cardiac troponin T (tnnt2) gene, comp... 40 4.7
26emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS... 40 4.7
27gb|BC094744.1| Homo sapiens multimerin 2, mRNA (cDNA clone MGC:1... 40 4.7
28gb|AC115870.18| Mus musculus chromosome 1, clone RP24-339L17, co... 40 4.7
29emb|BX469889.7| Zebrafish DNA sequence from clone DKEY-156P3 in ... 40 4.7
30dbj|AK023527.1| Homo sapiens cDNA FLJ13465 fis, clone PLACE10034... 40 4.7
31gb|AC025268.8| Homo sapiens chromosome 10 clone RP11-411A19, com... 40 4.7
32gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell ... 40 4.7
33gb|AC073433.9|AC073433 Arabidopsis thaliana chromosome 1 BAC F19... 40 4.7
34emb|BX004850.11| Zebrafish DNA sequence from clone CH211-51M24 i... 40 4.7
35emb|BX470166.11| Zebrafish DNA sequence from clone CH211-238N5 i... 40 4.7
36gb|AC138587.11| Mus musculus chromosome 9, clone RP24-160H16, co... 40 4.7

>ref|NM_195468.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OJ1004_F02.9), mRNA
          Length = 360

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 292 cggacggcgtgccgtcgtgttgcagccgtatgacccctgttgtgtaggtgcgga 345
           |||||||||||||| |||| ||||||||||| ||||| |  ||||||| |||||
Sbjct: 328 cggacggcgtgccgccgtgctgcagccgtatcaccccggccgtgtaggcgcgga 275



to top

>gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1004_F02
             map C8, complete sequence
          Length = 116304

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 292   cggacggcgtgccgtcgtgttgcagccgtatgacccctgttgtgtaggtgcgga 345
             |||||||||||||| |||| ||||||||||| ||||| |  ||||||| |||||
Sbjct: 42375 cggacggcgtgccgccgtgctgcagccgtatcaccccggccgtgtaggcgcgga 42322



to top

>gb|AC092172.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0014J14, complete sequence
          Length = 191397

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 292   cggacggcgtgccgtcgtgttgcagccgtatgacccctgttgtgtaggtgcgga 345
             |||||||||||||| |||| ||||||||||| ||||| |  ||||||| |||||
Sbjct: 11115 cggacggcgtgccgccgtgctgcagccgtatcaccccggccgtgtaggcgcgga 11062



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 312    tgcagccgtatgacccctgttgtgtaggtgcgga 345
              ||||||||||| |||||||| ||||||| |||||
Sbjct: 143647 tgcagccgtatcacccctgtcgtgtaggagcgga 143680



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                     
Query: 292     cggacggcgtgccgtcgtgttgcagccgtatgacccctgttgtgtaggtgcgga 345
               |||||||||||||| |||| ||||||||||| ||||| |  ||||||| |||||
Sbjct: 7185757 cggacggcgtgccgccgtgctgcagccgtatcaccccggccgtgtaggcgcgga 7185704



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 312     tgcagccgtatgacccctgttgtgtaggtgcgga 345
               ||||||||||| |||||||| ||||||| |||||
Sbjct: 7318286 tgcagccgtatcacccctgtcgtgtaggagcgga 7318319



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                     
Query: 292     cggacggcgtgccgtcgtgttgcagccgtatgacccctgttgtgtaggtgcgga 345
               |||||||||||||| |||| ||||||||||| ||||| |  ||||||| |||||
Sbjct: 7189053 cggacggcgtgccgccgtgctgcagccgtatcaccccggccgtgtaggcgcgga 7189000



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 312     tgcagccgtatgacccctgttgtgtaggtgcgga 345
               ||||||||||| |||||||| ||||||| |||||
Sbjct: 7321585 tgcagccgtatcacccctgtcgtgtaggagcgga 7321618



to top

>ref|NM_195495.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0014J14.29), mRNA
          Length = 285

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 312 tgcagccgtatgacccctgttgtgtaggtgcgga 345
           ||||||||||| |||||||| ||||||| |||||
Sbjct: 233 tgcagccgtatcacccctgtcgtgtaggagcgga 200



to top

>emb|AL645910.8| Mouse DNA sequence from clone RP23-173M6 on chromosome 11 Contains the
             5' end of a novel gene, the Mtmr3 gene for myotubularin
             related protein 3 and a glyceraldehyde-3-phosphate
             dehydrogenase (Gapd) pseudogene, complete sequence
          Length = 204413

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 24    attaattaaacacagcatcaca 45
             ||||||||||||||||||||||
Sbjct: 76701 attaattaaacacagcatcaca 76680



to top

>gb|AC150419.2| Branchiostoma floridae clone CH302-73J11, complete sequence
          Length = 185777

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 82     atgtctcaggagagaatagccataccagag 111
              |||||||||||||||| | |||||||||||
Sbjct: 126998 atgtctcaggagagaagaaccataccagag 126969



to top

>gb|AC129805.7| Homo sapiens 12 BAC RP11-125N22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165378

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 107    cagagtgagactgtctatcaaa 128
              ||||||||||||||||||||||
Sbjct: 108785 cagagtgagactgtctatcaaa 108764



to top

>dbj|AK068630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155I02, full
           insert sequence
          Length = 876

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 312 tgcagccgtatgacccctgttgtgtaggtgcgga 345
           ||||||||||| |||||||| ||||||| |||||
Sbjct: 620 tgcagccgtatcacccctgtcgtgtaggagcgga 587



to top

>gb|AC007016.5|AC007016 Homo sapiens chromosome 4 clone C0478G20 map 4p16, complete sequence
          Length = 172568

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 34     cacagcatcacagttgtatata 55
              ||||||||||||||||||||||
Sbjct: 162031 cacagcatcacagttgtatata 162052



to top

>gb|AC128707.2| Homo sapiens 12 BAC RP11-38F22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 121538

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   cataccagagtgagactgtct 122
             |||||||||||||||||||||
Sbjct: 57835 cataccagagtgagactgtct 57815



to top

>gb|AC164539.4| Mus musculus chromosome 1, clone wi1-168J17, complete sequence
          Length = 43396

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    cagcatgtctcaggagagaa 97
             ||||||||||||||||||||
Sbjct: 26021 cagcatgtctcaggagagaa 26002



to top

>gb|AC146428.3| Pan troglodytes BAC clone RP43-22M18 from 7, complete sequence
          Length = 194995

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 144   acaacatgttacatgtatgtgttt 167
             ||||||| ||||||||||||||||
Sbjct: 38172 acaacattttacatgtatgtgttt 38195



to top

>ref|NM_024756.1| Homo sapiens multimerin 2 (MMRN2), mRNA
          Length = 3828

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  cacaccctgtattctacaac 148
            ||||||||||||||||||||
Sbjct: 3214 cacaccctgtattctacaac 3233



to top

>emb|CR855325.15| Zebrafish DNA sequence from clone DKEY-48K8 in linkage group 5, complete
              sequence
          Length = 198456

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    cgaaagcagcacctccactt 207
              ||||||||||||||||||||
Sbjct: 145362 cgaaagcagcacctccactt 145343



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   cgaaagcagcacctccactt 207
             ||||||||||||||||||||
Sbjct: 34160 cgaaagcagcacctccactt 34179



to top

>gb|AE014302.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 2
             of 3 of the complete sequence
          Length = 277196

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   atctttacactcccttcaac 228
             ||||||||||||||||||||
Sbjct: 15474 atctttacactcccttcaac 15455



to top

>gb|AC114002.4| Mus musculus BAC clone RP23-165H7 from 12, complete sequence
          Length = 200112

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     caacatatgagaacatgcta 24
             ||||||||||||||||||||
Sbjct: 29492 caacatatgagaacatgcta 29511



to top

>gb|AC139110.4| Danio rerio strain Tue clone CH211-154N18, complete sequence
          Length = 181047

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  cgaaagcagcacctccactt 207
            ||||||||||||||||||||
Sbjct: 1029 cgaaagcagcacctccactt 1010



to top

>gb|AC163440.3| Mus musculus chromosome 1, clone RP23-445K8, complete sequence
          Length = 194714

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   cagagtgagactgtctatcaaaca 130
             |||||||||||||| |||||||||
Sbjct: 12111 cagagtgagactgtgtatcaaaca 12134



to top

>emb|BX322635.6| Human DNA sequence from clone RP1-290F12 on chromosome X Contains the
             gene for super conserved receptor expressed in brain 3
             (SREB3), the gene for cutaneous T-cell lymphoma-associated
             tumor antigen se20-4 (SE20-4) and two CpG islands,
             complete sequence
          Length = 66325

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   aacatgttacatgtatgtgt 165
             ||||||||||||||||||||
Sbjct: 58052 aacatgttacatgtatgtgt 58033



to top

>emb|AL355807.11| Human DNA sequence from clone RP11-487A20 on chromosome 13 Contains the
             5' end of the ITGBL1 gene for integrin, beta-like 1 (with
             EGF-like repeat domains), complete sequence
          Length = 149143

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   atctttacactcccttcaac 228
             ||||||||||||||||||||
Sbjct: 38373 atctttacactcccttcaac 38354



to top

>gb|AC084251.13| Homo sapiens chromosome 8, clone RP11-152C15, complete sequence
          Length = 181400

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 107    cagagtgagactgtctatcaaaca 130
              |||||||||||| |||||||||||
Sbjct: 154023 cagagtgagactctctatcaaaca 154046



to top

>emb|CR407559.8| Zebrafish DNA sequence from clone CH211-283G2 in linkage group 5,
             complete sequence
          Length = 149707

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   cgaaagcagcacctccactt 207
             ||||||||||||||||||||
Sbjct: 62751 cgaaagcagcacctccactt 62732



to top

>gb|AF512525.1| Danio rerio cardiac troponin T (tnnt2) gene, complete cds
          Length = 34713

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   cgaaagcagcacctccactt 207
             ||||||||||||||||||||
Sbjct: 20345 cgaaagcagcacctccactt 20326



to top

>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces
              hansenii
          Length = 1349926

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    accctgtattctacaacatg 151
              ||||||||||||||||||||
Sbjct: 126867 accctgtattctacaacatg 126886



to top

>gb|BC094744.1| Homo sapiens multimerin 2, mRNA (cDNA clone MGC:104596
            IMAGE:30343159), complete cds
          Length = 3844

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  cacaccctgtattctacaac 148
            ||||||||||||||||||||
Sbjct: 3214 cacaccctgtattctacaac 3233



to top

>gb|AC115870.18| Mus musculus chromosome 1, clone RP24-339L17, complete sequence
          Length = 186963

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   cagagtgagactgtctatcaaaca 130
             |||||||||||||| |||||||||
Sbjct: 96215 cagagtgagactgtgtatcaaaca 96238



to top

>emb|BX469889.7| Zebrafish DNA sequence from clone DKEY-156P3 in linkage group 18,
              complete sequence
          Length = 177975

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    cgaaagcagcacctccactt 207
              ||||||||||||||||||||
Sbjct: 142854 cgaaagcagcacctccactt 142835



to top

>dbj|AK023527.1| Homo sapiens cDNA FLJ13465 fis, clone PLACE1003493, weakly similar to
            ENDOTHELIAL CELL MULTIMERIN PRECURSOR
          Length = 3828

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  cacaccctgtattctacaac 148
            ||||||||||||||||||||
Sbjct: 3214 cacaccctgtattctacaac 3233



to top

>gb|AC025268.8| Homo sapiens chromosome 10 clone RP11-411A19, complete sequence
          Length = 149668

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   cacaccctgtattctacaac 148
             ||||||||||||||||||||
Sbjct: 80074 cacaccctgtattctacaac 80093



to top

>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 173810

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    tcacagttgtatatacacaa 60
             ||||||||||||||||||||
Sbjct: 20876 tcacagttgtatatacacaa 20857



to top

>gb|AC073433.9|AC073433 Arabidopsis thaliana chromosome 1 BAC F19C17 genomic sequence, complete
             sequence
          Length = 117055

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   caacatgttacatgtatgtg 164
             ||||||||||||||||||||
Sbjct: 42382 caacatgttacatgtatgtg 42363



to top

>emb|BX004850.11| Zebrafish DNA sequence from clone CH211-51M24 in linkage group 19,
             complete sequence
          Length = 121375

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   cgaaagcagcacctccactt 207
             ||||||||||||||||||||
Sbjct: 36693 cgaaagcagcacctccactt 36674



to top

>emb|BX470166.11| Zebrafish DNA sequence from clone CH211-238N5 in linkage group 18,
            complete sequence
          Length = 117241

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  cgaaagcagcacctccactt 207
            ||||||||||||||||||||
Sbjct: 4854 cgaaagcagcacctccactt 4873



to top

>gb|AC138587.11| Mus musculus chromosome 9, clone RP24-160H16, complete sequence
          Length = 185915

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     acatatgagaacatgctattaatt 30
             ||||||||| ||||||||||||||
Sbjct: 89984 acatatgagcacatgctattaatt 90007


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,230,590
Number of Sequences: 3902068
Number of extensions: 3230590
Number of successful extensions: 62453
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62356
Number of HSP's gapped (non-prelim): 97
length of query: 354
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 332
effective length of database: 17,147,199,772
effective search space: 5692870324304
effective search space used: 5692870324304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top