Clone Name | rbart09d11 |
---|---|
Clone Library Name | barley_pub |
>RIP2_ORYSA (Q6H5X0) Putative ripening-related protein 2 precursor| Length = 192 Score = 207 bits (527), Expect = 9e-54 Identities = 92/115 (80%), Positives = 105/115 (91%) Frame = -1 Query: 442 RAVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANGRSVL 263 +AVMTLN+F+ GG+GGDPSECDGKFH N+ERVVALSTGWY+ G RC N+RI ANGRSVL Sbjct: 78 KAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVALSTGWYANGRRCNKNIRINANGRSVL 137 Query: 262 AKVVDECDTLNGCDREHGYQPPCRNNVVDASQAVWDALGITGEEVGEYNVTWSDA 98 AKVVDECD+L+GCD+EH YQPPCR NVVDASQAVWDAL ITGE+VGEY++TWSDA Sbjct: 138 AKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITGEDVGEYDITWSDA 192
>RIP1_ORYSA (Q7XVA8) Putative ripening-related protein 1 precursor| Length = 183 Score = 201 bits (510), Expect = 9e-52 Identities = 91/114 (79%), Positives = 101/114 (88%) Frame = -1 Query: 439 AVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANGRSVLA 260 AVMTLN+FD GG+GG PSECD +H N+E VVALSTGWY+GGSRCG +VRI ANGRSVLA Sbjct: 70 AVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYAGGSRCGKSVRINANGRSVLA 129 Query: 259 KVVDECDTLNGCDREHGYQPPCRNNVVDASQAVWDALGITGEEVGEYNVTWSDA 98 KVVDECD+ GCD EH YQPPCR NVVDASQAVWDALGITGE+VGEY++TWSDA Sbjct: 130 KVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDITWSDA 183
>GRI22_VITVI (Q9M4H4) Ripening-related protein grip22 precursor| Length = 220 Score = 169 bits (427), Expect = 4e-42 Identities = 78/115 (67%), Positives = 95/115 (82%), Gaps = 1/115 (0%) Frame = -1 Query: 439 AVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRA-NGRSVL 263 AV+T NNF++GG+GG PS CD K+H NSER+VALSTGWY+GGSRCG +RI A NGRSVL Sbjct: 107 AVLTNNNFEKGGDGGGPSACDNKYHDNSERIVALSTGWYNGGSRCGKMIRITAQNGRSVL 166 Query: 262 AKVVDECDTLNGCDREHGYQPPCRNNVVDASQAVWDALGITGEEVGEYNVTWSDA 98 AKVVDECD+++GCD+EH QPPC NN+VD S AVW+ALG+ +GE +VTWS A Sbjct: 167 AKVVDECDSMHGCDKEHAGQPPCDNNIVDGSNAVWNALGL-DINIGEVDVTWSMA 220
>KIWEL_ACTCH (P84527) Kiwellin (Allergen Act c ?)| Length = 189 Score = 158 bits (399), Expect = 6e-39 Identities = 73/115 (63%), Positives = 91/115 (79%), Gaps = 1/115 (0%) Frame = -1 Query: 439 AVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRA-NGRSVL 263 A +T N+F EGG+ G PSECD +H+N+ER+VALSTGWY+GGSRCG +RI A NG+SV Sbjct: 76 AKLTNNDFSEGGDDGGPSECDESYHNNNERIVALSTGWYNGGSRCGKMIRITASNGKSVS 135 Query: 262 AKVVDECDTLNGCDREHGYQPPCRNNVVDASQAVWDALGITGEEVGEYNVTWSDA 98 AKVVDECD+ +GCD+EH QPPCRNN+VD S AVW ALG+ + VG ++TWS A Sbjct: 136 AKVVDECDSRHGCDKEHAGQPPCRNNIVDGSNAVWSALGL-DKNVGVVDITWSMA 189
>RIP3_ORYSA (Q9FWT5) Ripening-related protein 3 precursor| Length = 213 Score = 142 bits (357), Expect = 5e-34 Identities = 65/115 (56%), Positives = 86/115 (74%), Gaps = 1/115 (0%) Frame = -1 Query: 439 AVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANG-RSVL 263 A++TLN+F +GG+GG C G+F+ + + VVALSTGW+ G SRC +V IRA+G SV Sbjct: 100 ALLTLNSFADGGDGGGAPSCTGRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASVT 159 Query: 262 AKVVDECDTLNGCDREHGYQPPCRNNVVDASQAVWDALGITGEEVGEYNVTWSDA 98 A VVDECD+ GCD +H ++PPCRNN+VD S AVWDALG+ ++ GE +TWSDA Sbjct: 160 AMVVDECDSQRGCDSDHNFEPPCRNNIVDGSPAVWDALGLNKDD-GEAQITWSDA 213
>RIP5_ORYSA (Q8LN49) Putative ripening-related protein 5 precursor| Length = 276 Score = 140 bits (352), Expect = 2e-33 Identities = 64/107 (59%), Positives = 84/107 (78%), Gaps = 3/107 (2%) Frame = -1 Query: 418 FDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANG---RSVLAKVVD 248 F++G +GG PSECD +H + E VVALSTGW++G +RCG+ VRI A+G RSV+AKVVD Sbjct: 60 FEKGKDGGGPSECDNAYHSDGELVVALSTGWFAGTARCGHRVRITASGGGGRSVVAKVVD 119 Query: 247 ECDTLNGCDREHGYQPPCRNNVVDASQAVWDALGITGEEVGEYNVTW 107 ECD+++GCD EH Y+ PC NN+VDAS AVWDALG+ + VG ++TW Sbjct: 120 ECDSVHGCDGEHNYEAPCGNNIVDASPAVWDALGL-DKNVGMEHITW 165
>RIP4_ORYSA (Q9FWU1) Putative ripening-related protein 4 precursor| Length = 377 Score = 133 bits (334), Expect = 2e-31 Identities = 64/110 (58%), Positives = 81/110 (73%), Gaps = 3/110 (2%) Frame = -1 Query: 439 AVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWY--SGGSRCGNNVRIRA-NGRS 269 A +TLN+F GG+GG S CDG+FH ++ VVALS+GW G SRC +R+ A NGRS Sbjct: 101 ATLTLNSFARGGDGGGRSSCDGRFHPDTAMVVALSSGWLRLDGASRCNRMIRVAAGNGRS 160 Query: 268 VLAKVVDECDTLNGCDREHGYQPPCRNNVVDASQAVWDALGITGEEVGEY 119 LA+VVDECD++NGCD EH ++PPC N+VVD S AVW ALG+ E VGE+ Sbjct: 161 ALARVVDECDSVNGCDAEHNFEPPCPNDVVDGSPAVWKALGL-DEGVGEF 209 Score = 116 bits (291), Expect = 2e-26 Identities = 60/122 (49%), Positives = 79/122 (64%), Gaps = 10/122 (8%) Frame = -1 Query: 439 AVMTLNNFDEG-GEGGDPSECDGKFHHNSERVVALSTGWY---SGGSRCGNNVRI----- 287 A++TL FD G +GG P+ CD +FH N+E VVALS+GW G RC +R+ Sbjct: 249 AILTLKVFDHGEDDGGVPTSCDMRFHRNTELVVALSSGWLRLGGGRRRCHRRIRVFAVAG 308 Query: 286 RANGRS-VLAKVVDECDTLNGCDREHGYQPPCRNNVVDASQAVWDALGITGEEVGEYNVT 110 A+GRS V+A+VVD+CD++NGC E G+ PPCRNN V S VW+ LG+ VGE+ V Sbjct: 309 AASGRSSVVARVVDDCDSVNGCREEDGFAPPCRNNAVGGSPVVWEKLGLNA-SVGEFEVV 367 Query: 109 WS 104 WS Sbjct: 368 WS 369
>RIP6_ORYSA (Q7XD66) Putative ripening-related protein 6 precursor| Length = 167 Score = 121 bits (304), Expect = 7e-28 Identities = 61/116 (52%), Positives = 79/116 (68%), Gaps = 2/116 (1%) Frame = -1 Query: 439 AVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRI--RANGRSV 266 AVMT+N F+EG +GG P+ CDG++H + V ALSTGW++GG RC +RI R NGRSV Sbjct: 62 AVMTVNGFEEGEDGGGPAACDGRYHSDRSLVAALSTGWFAGGRRCHRGIRITSRQNGRSV 121 Query: 265 LAKVVDECDTLNGCDREHGYQPPCRNNVVDASQAVWDALGITGEEVGEYNVTWSDA 98 +A VVDECD+ +G C++++VD S AVW ALG+ VGE VTWSDA Sbjct: 122 VATVVDECDSRHG---------GCKDDIVDTSAAVWSALGL-DTNVGEVPVTWSDA 167
>RIP7_ORYSA (Q7XD65) Putative ripening-related protein 7 precursor| Length = 162 Score = 105 bits (262), Expect = 5e-23 Identities = 57/123 (46%), Positives = 76/123 (61%), Gaps = 10/123 (8%) Frame = -1 Query: 439 AVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRI-------RA 281 AVMT+N F++G +GG P+ CDG +H + E +VALST W++GG RC +RI R Sbjct: 50 AVMTVNGFEKGEDGGGPAACDGHYHSDGELIVALSTEWFAGGRRCHRRIRITPSEHGRRG 109 Query: 280 NG---RSVLAKVVDECDTLNGCDREHGYQPPCRNNVVDASQAVWDALGITGEEVGEYNVT 110 G R+V A VVDECD+ G C+++VVD+S AVW ALG+ + GE VT Sbjct: 110 GGGGRRAVEATVVDECDSRRG----------CKDDVVDSSPAVWRALGLDTDS-GEVRVT 158 Query: 109 WSD 101 WSD Sbjct: 159 WSD 161
>ALL7_ASPFU (O42799) Allergen Asp f 7 precursor| Length = 270 Score = 34.7 bits (78), Expect = 0.11 Identities = 23/62 (37%), Positives = 27/62 (43%) Frame = -1 Query: 427 LNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANGRSVLAKVVD 248 L +D PS C SE VVAL G + CG V I NG + A VVD Sbjct: 176 LTYYDTATSASAPSSCGLTNDGFSENVVALPVGIMTDAD-CGKTVTITYNGITKTATVVD 234 Query: 247 EC 242 +C Sbjct: 235 KC 236
>TRIPB_HUMAN (Q15643) Thyroid receptor-interacting protein 11 (TRIP-11)| (Golgi-associated microtubule-binding protein 210) (GMAP-210) (Trip230) (Clonal evolution related gene on chromosome 14) Length = 1979 Score = 32.0 bits (71), Expect = 0.70 Identities = 21/70 (30%), Positives = 29/70 (41%) Frame = -1 Query: 385 ECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANGRSVLAKVVDECDTLNGCDREHGY 206 E + FH + V TGW GGS+ N +R N +SV+ E H Sbjct: 1816 EMEQLFHDDQGSVTRWMTGWLGGGSKSVPNTPLRPNQQSVVNSSFSELFVKFLETESHPS 1875 Query: 205 QPPCRNNVVD 176 PP + +V D Sbjct: 1876 IPPPKLSVHD 1885
>PTN14_MOUSE (Q62130) Tyrosine-protein phosphatase non-receptor type 14 (EC| 3.1.3.48) (Protein-tyrosine phosphatase PTP36) Length = 1189 Score = 31.6 bits (70), Expect = 0.91 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%) Frame = +3 Query: 111 VTLYSPTSSPVMPRASQTAWEASTTLLRH-GGW*PCSRSHPLRVSHS------STTLAST 269 V + SSPV+ ++ Q E T H GG ++ H L V +S + TL S Sbjct: 606 VKTFQEDSSPVVHQSLQEVSEPLTATKHHGGGGGTVNKRHSLEVMNSMVRGMEAMTLKSL 665 Query: 270 DLPLARIRTLLPQ 308 ++P+AR TL Q Sbjct: 666 NIPMARRNTLREQ 678
>KCNN3_HUMAN (Q9UGI6) Small conductance calcium-activated potassium channel| protein 3 (SK3) (SKCa3) Length = 736 Score = 31.2 bits (69), Expect = 1.2 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Frame = +3 Query: 36 GGIHLTLASCTCTGGHAVHAHASDQ-VTLYSPTSSPVMPRASQTAWEASTTLLRHGGW*P 212 GG+ L+ + + + + A Q + L+SP++ P + +S+ A TLL H Sbjct: 187 GGVMKPLSRLSASRRNLIEAETEGQPLQLFSPSNPPEIVISSREDNHAHQTLLHHPN--- 243 Query: 213 CSRSHPLRVSHSSTTLASTDLPLARIR 293 + +H H+ TT +ST P A R Sbjct: 244 ATHNH----QHAGTTASSTTFPKANKR 266
>CHAL_BRARA (P81729) Chitin-binding allergen Bra r 2 (Fragments)| Length = 91 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 4/61 (6%) Frame = -1 Query: 322 SGGSRCGNNVRIRANGRSVLAKVVDECDTLNGCDREHGYQPPCRNN----VVDASQAVWD 155 +GG C N+ G D C N C + Y P +NN V A + WD Sbjct: 2 AGGQTCAGNICCSQYG--YCGTTADYCSPDNNCQATYHYYNPAQNNWDLRAVSAYCSTWD 59 Query: 154 A 152 A Sbjct: 60 A 60
>KCNN3_PIG (P58392) Small conductance calcium-activated potassium channel| protein 3 (SK3) Length = 724 Score = 30.4 bits (67), Expect = 2.0 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Frame = +3 Query: 36 GGIHLTLASCTCTGGHAVHAHASDQ-VTLYSPTSSPVMPRASQTAWEASTTLLRHGGW*P 212 GG+ L+ + + + + A Q + L+SP++ P + +S+ A TLL H Sbjct: 175 GGVMKPLSRLSASRRNLIEAEPEGQPLQLFSPSNPPEIIISSREDNHAHQTLLHHPN--- 231 Query: 213 CSRSHPLRVSHSSTTLASTDLPLARIR 293 + +H H+ TT +ST P A R Sbjct: 232 ATHNH----QHAGTTASSTTFPKANKR 254
>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle| attachment abnormal protein 3) Length = 3767 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 11/76 (14%) Frame = -1 Query: 364 HNSERVVALSTGWYSGGSRCGNNVRIRANGRS--VLAKVVDEC--DTLNGCDR------- 218 H + + L G+ +C ++GR + ++ +EC +LN CDR Sbjct: 2175 HQNAACIDLEEGYEC---KCNQGFMDHSHGRPGRICKQLTNECLRPSLNSCDRNARCIDK 2231 Query: 217 EHGYQPPCRNNVVDAS 170 E GY+ CR+ +D S Sbjct: 2232 EEGYECECRDGFIDVS 2247
>KCNN3_MOUSE (P58391) Small conductance calcium-activated potassium channel| protein 3 (SK3) Length = 731 Score = 30.0 bits (66), Expect = 2.7 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Frame = +3 Query: 36 GGIHLTLASCTCTGGHAVHAHASDQ-VTLYSPTSSPVMPRASQTAWEASTTLLRHGGW*P 212 GG+ L+ + + + + A Q + L+SP++ P + +S+ A TLL H Sbjct: 182 GGVMKPLSRLSASRRNLIEAEPEGQPLQLFSPSNPPEIIISSREDNHAHQTLLHHPN--- 238 Query: 213 CSRSHPLRVSHSSTTLASTDLPLARIR 293 + +H H+ TT ST P A R Sbjct: 239 ATHNH----QHAGTTAGSTTFPKANKR 261
>KCNN3_RAT (P70605) Small conductance calcium-activated potassium channel| protein 3 (SK3) Length = 732 Score = 30.0 bits (66), Expect = 2.7 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Frame = +3 Query: 36 GGIHLTLASCTCTGGHAVHAHASDQ-VTLYSPTSSPVMPRASQTAWEASTTLLRHGGW*P 212 GG+ L+ + + + + A Q + L+SP++ P + +S+ A TLL H Sbjct: 183 GGVMKPLSRLSASRRNLIEAEPEGQPLQLFSPSNPPEIIISSREDNHAHQTLLHHPN--- 239 Query: 213 CSRSHPLRVSHSSTTLASTDLPLARIR 293 + +H H+ TT ST P A R Sbjct: 240 ATHNH----QHAGTTAGSTTFPKANKR 262
>YQD7_CAEEL (Q09267) Hypothetical protein C32D5.7| Length = 435 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 Query: 216 SRSHPLRVSHSSTTLASTDLPLARIRTLLPQREPP 320 SR PLR H ST STD+P+ P+R+ P Sbjct: 382 SRQDPLRQGHRSTGSISTDIPVLEEYLHSPRRQLP 416
>ATP9A_MOUSE (O70228) Probable phospholipid-transporting ATPase IIA (EC 3.6.3.1)| (ATPase class II type 9A) Length = 1047 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +1 Query: 262 QARTCRWLGSVRCCRSGSPRCTTPWTAPP 348 +A C WL RCC G PR T W P Sbjct: 21 RAGCCEWL---RCCGGGEPRPRTVWLGHP 46
>LARP1_MOUSE (Q6ZQ58) La-related protein 1 (La ribonucleoprotein domain family| member 1) (Fragment) Length = 364 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/63 (31%), Positives = 26/63 (41%) Frame = +3 Query: 144 MPRASQTAWEASTTLLRHGGW*PCSRSHPLRVSHSSTTLASTDLPLARIRTLLPQREPPL 323 MPR +T ++ L H GW SR H R + S++ S P PQ P Sbjct: 83 MPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSS-PSEGTPAVGSYGCTPQSLPKF 141 Query: 324 YHP 332 HP Sbjct: 142 QHP 144
>VAV_MOUSE (P27870) Proto-oncogene vav (p95vav)| Length = 845 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/26 (42%), Positives = 12/26 (46%) Frame = +3 Query: 153 ASQTAWEASTTLLRHGGW*PCSRSHP 230 A WE T GW PC+R HP Sbjct: 632 AEHNWWEGRNTATNEVGWFPCNRVHP 657
>LARP1_HUMAN (Q6PKG0) La-related protein 1 (La ribonucleoprotein domain family| member 1) Length = 1096 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/63 (31%), Positives = 26/63 (41%) Frame = +3 Query: 144 MPRASQTAWEASTTLLRHGGW*PCSRSHPLRVSHSSTTLASTDLPLARIRTLLPQREPPL 323 MPR +T ++ L H GW SR H R + S++ S P PQ P Sbjct: 814 MPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSS-PSEGTPTVGSYGCTPQSLPKF 872 Query: 324 YHP 332 HP Sbjct: 873 QHP 875
>JJAZ_MOUSE (Q80U70) Polycomb protein Suz12 (Suppressor of zeste 12 protein| homolog) Length = 741 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -1 Query: 409 GGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANGRSVLA 260 GG G G F ++ V A ++G SGG CG A+ S A Sbjct: 12 GGSGPSAGSGGGGFGGSAAAVAAAASGGKSGGGGCGGGGSYSASSSSAAA 61
>YO036_YEAST (Q08206) Uncharacterized protein YOL036W| Length = 761 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = +3 Query: 102 SDQVTLYSPTSSPVMPRASQTAWEASTTLLRH 197 S++VT+Y+ T+ P MP+ S T +STT+ H Sbjct: 16 SNRVTVYNGTTLPTMPK-SATPTSSSTTVTTH 46
>WAPA_BACSU (Q07833) Wall-associated protein precursor| Length = 2334 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/81 (22%), Positives = 31/81 (38%) Frame = -1 Query: 349 VVALSTGWYSGGSRCGNNVRIRANGRSVLAKVVDECDTLNGCDREHGYQPPCRNNVVDAS 170 V A W SGG+ G + NG+ K++ ++ N E Y P N + Sbjct: 438 VTAAVKSWNSGGANYGFKLHTNGNGKEYWKKLISSANSANKPYIEVTYTIPKGNTPTIKA 497 Query: 169 QAVWDALGITGEEVGEYNVTW 107 G+ G ++++W Sbjct: 498 YH-------NGDSTGYFDISW 511 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,412,307 Number of Sequences: 219361 Number of extensions: 827937 Number of successful extensions: 2937 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2923 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)