Clone Name | rbart09d11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 258 bits (130), Expect = 1e-65 Identities = 292/346 (84%) Strand = Plus / Minus Query: 94 ctcatgcatccgaccaagtgacgttgtactcgccgacctcctccccggtgatgcccagag 153 ||||||| ||||||||||||| | |||||||||||| || || |||||||||| || | Sbjct: 25558554 ctcatgcgtccgaccaagtgatatcgtactcgccgacgtcttcgccggtgatgcggagcg 25558495 Query: 154 catcccagacggcctgggaggcgtcgacgacgttgttgcggcacggcggctggtagccgt 213 | ||||| |||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 25558494 cgtcccacacggcctgcgacgcgtcgacgacgttggggcggcacggcggctggtaggcgt 25558435 Query: 214 gctcgcggtcgcacccgttgagggtgtcgcactcgtcgacgaccttggcaagcacggacc 273 |||| |||||| |||| |||| |||||||||||||||||||||||| |||||||||| Sbjct: 25558434 gctccttgtcgcagccgtgcagggagtcgcactcgtcgacgaccttggcgagcacggacc 25558375 Query: 274 tgccgttggctcggatccgtacgttgttgccgcagcgggagcccccgctgtaccaccccg 333 |||||||||| |||||| | ||| ||| |||||| ||| | ||||||||||| Sbjct: 25558374 tgccgttggcgttgatccggatgttcttgttgcagcgcctgccgttggcgtaccaccccg 25558315 Query: 334 tggacagcgccaccacgcgctctgagttgtggtggaacttgccgtcgcactccgacgggt 393 |||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||| Sbjct: 25558314 tggacagcgccaccacgcgctccgtgttcttgtggaacttgccgtcgcactccgacgggt 25558255 Query: 394 ccccgccttcgccgccctcgtcaaagttgttgagcgtcatgaccgc 439 | ||||| |||||||| | || |||| ||| |||||||| ||||| Sbjct: 25558254 cgccgccgtcgccgccggcttcgaagtcgttcagcgtcatcaccgc 25558209
>dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0014E22 Length = 157627 Score = 258 bits (130), Expect = 1e-65 Identities = 292/346 (84%) Strand = Plus / Minus Query: 94 ctcatgcatccgaccaagtgacgttgtactcgccgacctcctccccggtgatgcccagag 153 ||||||| ||||||||||||| | |||||||||||| || || |||||||||| || | Sbjct: 28601 ctcatgcgtccgaccaagtgatatcgtactcgccgacgtcttcgccggtgatgcggagcg 28542 Query: 154 catcccagacggcctgggaggcgtcgacgacgttgttgcggcacggcggctggtagccgt 213 | ||||| |||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 28541 cgtcccacacggcctgcgacgcgtcgacgacgttggggcggcacggcggctggtaggcgt 28482 Query: 214 gctcgcggtcgcacccgttgagggtgtcgcactcgtcgacgaccttggcaagcacggacc 273 |||| |||||| |||| |||| |||||||||||||||||||||||| |||||||||| Sbjct: 28481 gctccttgtcgcagccgtgcagggagtcgcactcgtcgacgaccttggcgagcacggacc 28422 Query: 274 tgccgttggctcggatccgtacgttgttgccgcagcgggagcccccgctgtaccaccccg 333 |||||||||| |||||| | ||| ||| |||||| ||| | ||||||||||| Sbjct: 28421 tgccgttggcgttgatccggatgttcttgttgcagcgcctgccgttggcgtaccaccccg 28362 Query: 334 tggacagcgccaccacgcgctctgagttgtggtggaacttgccgtcgcactccgacgggt 393 |||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||| Sbjct: 28361 tggacagcgccaccacgcgctccgtgttcttgtggaacttgccgtcgcactccgacgggt 28302 Query: 394 ccccgccttcgccgccctcgtcaaagttgttgagcgtcatgaccgc 439 | ||||| |||||||| | || |||| ||| |||||||| ||||| Sbjct: 28301 cgccgccgtcgccgccggcttcgaagtcgttcagcgtcatcaccgc 28256
>dbj|AP004067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1581_H09 Length = 86699 Score = 258 bits (130), Expect = 1e-65 Identities = 292/346 (84%) Strand = Plus / Minus Query: 94 ctcatgcatccgaccaagtgacgttgtactcgccgacctcctccccggtgatgcccagag 153 ||||||| ||||||||||||| | |||||||||||| || || |||||||||| || | Sbjct: 49953 ctcatgcgtccgaccaagtgatatcgtactcgccgacgtcttcgccggtgatgcggagcg 49894 Query: 154 catcccagacggcctgggaggcgtcgacgacgttgttgcggcacggcggctggtagccgt 213 | ||||| |||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 49893 cgtcccacacggcctgcgacgcgtcgacgacgttggggcggcacggcggctggtaggcgt 49834 Query: 214 gctcgcggtcgcacccgttgagggtgtcgcactcgtcgacgaccttggcaagcacggacc 273 |||| |||||| |||| |||| |||||||||||||||||||||||| |||||||||| Sbjct: 49833 gctccttgtcgcagccgtgcagggagtcgcactcgtcgacgaccttggcgagcacggacc 49774 Query: 274 tgccgttggctcggatccgtacgttgttgccgcagcgggagcccccgctgtaccaccccg 333 |||||||||| |||||| | ||| ||| |||||| ||| | ||||||||||| Sbjct: 49773 tgccgttggcgttgatccggatgttcttgttgcagcgcctgccgttggcgtaccaccccg 49714 Query: 334 tggacagcgccaccacgcgctctgagttgtggtggaacttgccgtcgcactccgacgggt 393 |||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||| Sbjct: 49713 tggacagcgccaccacgcgctccgtgttcttgtggaacttgccgtcgcactccgacgggt 49654 Query: 394 ccccgccttcgccgccctcgtcaaagttgttgagcgtcatgaccgc 439 | ||||| |||||||| | || |||| ||| |||||||| ||||| Sbjct: 49653 cgccgccgtcgccgccggcttcgaagtcgttcagcgtcatcaccgc 49608
>ref|XM_466941.1| Oryza sativa (japonica cultivar-group), mRNA Length = 579 Score = 256 bits (129), Expect = 5e-65 Identities = 291/345 (84%) Strand = Plus / Minus Query: 95 tcatgcatccgaccaagtgacgttgtactcgccgacctcctccccggtgatgcccagagc 154 |||||| ||||||||||||| | |||||||||||| || || |||||||||| || || Sbjct: 579 tcatgcgtccgaccaagtgatatcgtactcgccgacgtcttcgccggtgatgcggagcgc 520 Query: 155 atcccagacggcctgggaggcgtcgacgacgttgttgcggcacggcggctggtagccgtg 214 ||||| |||||||| || ||||||||||||||| ||||||||||||||||||| |||| Sbjct: 519 gtcccacacggcctgcgacgcgtcgacgacgttggggcggcacggcggctggtaggcgtg 460 Query: 215 ctcgcggtcgcacccgttgagggtgtcgcactcgtcgacgaccttggcaagcacggacct 274 ||| |||||| |||| |||| |||||||||||||||||||||||| ||||||||||| Sbjct: 459 ctccttgtcgcagccgtgcagggagtcgcactcgtcgacgaccttggcgagcacggacct 400 Query: 275 gccgttggctcggatccgtacgttgttgccgcagcgggagcccccgctgtaccaccccgt 334 ||||||||| |||||| | ||| ||| |||||| ||| | |||||||||||| Sbjct: 399 gccgttggcgttgatccggatgttcttgttgcagcgcctgccgttggcgtaccaccccgt 340 Query: 335 ggacagcgccaccacgcgctctgagttgtggtggaacttgccgtcgcactccgacgggtc 394 ||||||||||||||||||||| | ||| | |||||||||||||||||||||||||||||| Sbjct: 339 ggacagcgccaccacgcgctccgtgttcttgtggaacttgccgtcgcactccgacgggtc 280 Query: 395 cccgccttcgccgccctcgtcaaagttgttgagcgtcatgaccgc 439 ||||| |||||||| | || |||| ||| |||||||| ||||| Sbjct: 279 gccgccgtcgccgccggcttcgaagtcgttcagcgtcatcaccgc 235
>ref|XM_472110.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 552 Score = 240 bits (121), Expect = 3e-60 Identities = 289/345 (83%) Strand = Plus / Minus Query: 95 tcatgcatccgaccaagtgacgttgtactcgccgacctcctccccggtgatgcccagagc 154 |||||| ||||||||||||| | |||||||||||| ||||| ||||||||||| || || Sbjct: 552 tcatgcgtccgaccaagtgatatcgtactcgccgacgtcctcgccggtgatgccgagcgc 493 Query: 155 atcccagacggcctgggaggcgtcgacgacgttgttgcggcacggcggctggtagccgtg 214 ||||| |||||||| || ||||||||||||||| ||||||||||||||||||| |||| Sbjct: 492 gtcccacacggcctgcgacgcgtcgacgacgttggggcggcacggcggctggtaggcgtg 433 Query: 215 ctcgcggtcgcacccgttgagggtgtcgcactcgtcgacgaccttggcaagcacggacct 274 ||| |||||| ||| ||| ||||||||||||||| |||||||| ||||||||||| Sbjct: 432 ctcctcgtcgcagccgcgctgggagtcgcactcgtcgaccaccttggcgagcacggacct 373 Query: 275 gccgttggctcggatccgtacgttgttgccgcagcgggagcccccgctgtaccaccccgt 334 ||||||||| |||||| ||| | |||||||||||| ||| ||| |||||||||||| Sbjct: 372 gccgttggcgttgatccggacgctcttgccgcagcggctgccgccggcgtaccaccccgt 313 Query: 335 ggacagcgccaccacgcgctctgagttgtggtggaacttgccgtcgcactccgacgggtc 394 ||||||||||||||| |||| | |||| |||| || | ||||||||||||||||| | Sbjct: 312 ggacagcgccaccaccagctccgtgttgctgtggtacatctcgtcgcactccgacgggcc 253 Query: 395 cccgccttcgccgccctcgtcaaagttgttgagcgtcatgaccgc 439 ||||| |||||||| |||| |||| ||| |||||||| ||||| Sbjct: 252 gccgccgtcgccgccggcgtcgaagtcgttcagcgtcatcaccgc 208
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 240 bits (121), Expect = 3e-60 Identities = 289/345 (83%) Strand = Plus / Minus Query: 95 tcatgcatccgaccaagtgacgttgtactcgccgacctcctccccggtgatgcccagagc 154 |||||| ||||||||||||| | |||||||||||| ||||| ||||||||||| || || Sbjct: 17571404 tcatgcgtccgaccaagtgatatcgtactcgccgacgtcctcgccggtgatgccgagcgc 17571345 Query: 155 atcccagacggcctgggaggcgtcgacgacgttgttgcggcacggcggctggtagccgtg 214 ||||| |||||||| || ||||||||||||||| ||||||||||||||||||| |||| Sbjct: 17571344 gtcccacacggcctgcgacgcgtcgacgacgttggggcggcacggcggctggtaggcgtg 17571285 Query: 215 ctcgcggtcgcacccgttgagggtgtcgcactcgtcgacgaccttggcaagcacggacct 274 ||| |||||| ||| ||| ||||||||||||||| |||||||| ||||||||||| Sbjct: 17571284 ctcctcgtcgcagccgcgctgggagtcgcactcgtcgaccaccttggcgagcacggacct 17571225 Query: 275 gccgttggctcggatccgtacgttgttgccgcagcgggagcccccgctgtaccaccccgt 334 ||||||||| |||||| ||| | |||||||||||| ||| ||| |||||||||||| Sbjct: 17571224 gccgttggcgttgatccggacgctcttgccgcagcggctgccgccggcgtaccaccccgt 17571165 Query: 335 ggacagcgccaccacgcgctctgagttgtggtggaacttgccgtcgcactccgacgggtc 394 ||||||||||||||| |||| | |||| |||| || | ||||||||||||||||| | Sbjct: 17571164 ggacagcgccaccaccagctccgtgttgctgtggtacatctcgtcgcactccgacgggcc 17571105 Query: 395 cccgccttcgccgccctcgtcaaagttgttgagcgtcatgaccgc 439 ||||| |||||||| |||| |||| ||| |||||||| ||||| Sbjct: 17571104 gccgccgtcgccgccggcgtcgaagtcgttcagcgtcatcaccgc 17571060
>emb|AL662983.3|OSJN00181 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081G05, complete sequence Length = 173950 Score = 240 bits (121), Expect = 3e-60 Identities = 289/345 (83%) Strand = Plus / Minus Query: 95 tcatgcatccgaccaagtgacgttgtactcgccgacctcctccccggtgatgcccagagc 154 |||||| ||||||||||||| | |||||||||||| ||||| ||||||||||| || || Sbjct: 52144 tcatgcgtccgaccaagtgatatcgtactcgccgacgtcctcgccggtgatgccgagcgc 52085 Query: 155 atcccagacggcctgggaggcgtcgacgacgttgttgcggcacggcggctggtagccgtg 214 ||||| |||||||| || ||||||||||||||| ||||||||||||||||||| |||| Sbjct: 52084 gtcccacacggcctgcgacgcgtcgacgacgttggggcggcacggcggctggtaggcgtg 52025 Query: 215 ctcgcggtcgcacccgttgagggtgtcgcactcgtcgacgaccttggcaagcacggacct 274 ||| |||||| ||| ||| ||||||||||||||| |||||||| ||||||||||| Sbjct: 52024 ctcctcgtcgcagccgcgctgggagtcgcactcgtcgaccaccttggcgagcacggacct 51965 Query: 275 gccgttggctcggatccgtacgttgttgccgcagcgggagcccccgctgtaccaccccgt 334 ||||||||| |||||| ||| | |||||||||||| ||| ||| |||||||||||| Sbjct: 51964 gccgttggcgttgatccggacgctcttgccgcagcggctgccgccggcgtaccaccccgt 51905 Query: 335 ggacagcgccaccacgcgctctgagttgtggtggaacttgccgtcgcactccgacgggtc 394 ||||||||||||||| |||| | |||| |||| || | ||||||||||||||||| | Sbjct: 51904 ggacagcgccaccaccagctccgtgttgctgtggtacatctcgtcgcactccgacgggcc 51845 Query: 395 cccgccttcgccgccctcgtcaaagttgttgagcgtcatgaccgc 439 ||||| |||||||| |||| |||| ||| |||||||| ||||| Sbjct: 51844 gccgccgtcgccgccggcgtcgaagtcgttcagcgtcatcaccgc 51800
>ref|NM_197122.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0051D19.14), mRNA Length = 1134 Score = 69.9 bits (35), Expect = 7e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 175 cgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttga 234 |||||||||||| ||| |||||||||||| | || ||||||| |||||| ||||| | Sbjct: 574 cgtcgacgacgtcgttcgggcacggcggctcgaagttgtgctcggcgtcgcagccgttca 515 Query: 235 gggtgtcgcactcgtcgacgaccttggcaagcacggacctgccgttg 281 | ||||||||||||||||||| |||| ||| |||||| ||||||| Sbjct: 514 ccgagtcgcactcgtcgacgaccctggccagcgcggaccggccgttg 468
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 69.9 bits (35), Expect = 7e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 175 cgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttga 234 |||||||||||| ||| |||||||||||| | || ||||||| |||||| ||||| | Sbjct: 96916 cgtcgacgacgtcgttcgggcacggcggctcgaagttgtgctcggcgtcgcagccgttca 96857 Query: 235 gggtgtcgcactcgtcgacgaccttggcaagcacggacctgccgttg 281 | ||||||||||||||||||| |||| ||| |||||| ||||||| Sbjct: 96856 ccgagtcgcactcgtcgacgaccctggccagcgcggaccggccgttg 96810 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Plus Query: 175 cgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttga 234 ||||||||| |||||| ||||||||||||| | || ||| |||| |||||| ||| Sbjct: 129166 cgtcgacgatgttgttccggcacggcggctcgaagttgtggtcgctgtcgcagccgcgct 129225 Query: 235 gggtgtcgcactcgtcgacgaccttggc 262 ||| ||||||||||||||||||| |||| Sbjct: 129226 gggagtcgcactcgtcgacgaccatggc 129253 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 174 gcgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttg 233 ||||| |||| ||||||| ||||||||||| |||| |||||||| |||||| |||| Sbjct: 107144 gcgtccacgatgttgttgtcgcacggcggctcgtagttgtgctcgccgtcgcagccgtgc 107085 Query: 234 agggtgtcgcactcgtcgacgacctt 259 | || |||||||||||| || ||||| Sbjct: 107084 acggagtcgcactcgtccaccacctt 107059 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 325 accaccccgtggacagcgccaccac 349 ||||||||||||||||||||||||| Sbjct: 129319 accaccccgtggacagcgccaccac 129343
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 69.9 bits (35), Expect = 7e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 175 cgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttga 234 |||||||||||| ||| |||||||||||| | || ||||||| |||||| ||||| | Sbjct: 18116212 cgtcgacgacgtcgttcgggcacggcggctcgaagttgtgctcggcgtcgcagccgttca 18116271 Query: 235 gggtgtcgcactcgtcgacgaccttggcaagcacggacctgccgttg 281 | ||||||||||||||||||| |||| ||| |||||| ||||||| Sbjct: 18116272 ccgagtcgcactcgtcgacgaccctggccagcgcggaccggccgttg 18116318 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 175 cgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttga 234 ||||||||| |||||| ||||||||||||| | || ||| |||| |||||| ||| Sbjct: 18083962 cgtcgacgatgttgttccggcacggcggctcgaagttgtggtcgctgtcgcagccgcgct 18083903 Query: 235 gggtgtcgcactcgtcgacgaccttggc 262 ||| ||||||||||||||||||| |||| Sbjct: 18083902 gggagtcgcactcgtcgacgaccatggc 18083875 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 174 gcgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttg 233 ||||| |||| ||||||| ||||||||||| |||| |||||||| |||||| |||| Sbjct: 18105984 gcgtccacgatgttgttgtcgcacggcggctcgtagttgtgctcgccgtcgcagccgtgc 18106043 Query: 234 agggtgtcgcactcgtcgacgacctt 259 | || |||||||||||| || ||||| Sbjct: 18106044 acggagtcgcactcgtccaccacctt 18106069 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 325 accaccccgtggacagcgccaccac 349 ||||||||||||||||||||||||| Sbjct: 18083809 accaccccgtggacagcgccaccac 18083785
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 69.9 bits (35), Expect = 7e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 175 cgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttga 234 |||||||||||| ||| |||||||||||| | || ||||||| |||||| ||||| | Sbjct: 18125465 cgtcgacgacgtcgttcgggcacggcggctcgaagttgtgctcggcgtcgcagccgttca 18125524 Query: 235 gggtgtcgcactcgtcgacgaccttggcaagcacggacctgccgttg 281 | ||||||||||||||||||| |||| ||| |||||| ||||||| Sbjct: 18125525 ccgagtcgcactcgtcgacgaccctggccagcgcggaccggccgttg 18125571 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 175 cgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttga 234 ||||||||| |||||| ||||||||||||| | || ||| |||| |||||| ||| Sbjct: 18093215 cgtcgacgatgttgttccggcacggcggctcgaagttgtggtcgctgtcgcagccgcgct 18093156 Query: 235 gggtgtcgcactcgtcgacgaccttggc 262 ||| ||||||||||||||||||| |||| Sbjct: 18093155 gggagtcgcactcgtcgacgaccatggc 18093128 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Plus Query: 174 gcgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttg 233 ||||| |||| ||||||| ||||||||||| |||| |||||||| |||||| |||| Sbjct: 18115237 gcgtccacgatgttgttgtcgcacggcggctcgtagttgtgctcgccgtcgcagccgtgc 18115296 Query: 234 agggtgtcgcactcgtcgacgacctt 259 | || |||||||||||| || ||||| Sbjct: 18115297 acggagtcgcactcgtccaccacctt 18115322 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 325 accaccccgtggacagcgccaccac 349 ||||||||||||||||||||||||| Sbjct: 18093062 accaccccgtggacagcgccaccac 18093038
>ref|NM_197116.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0051D19.24), mRNA Length = 642 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 175 cgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttga 234 ||||||||| |||||| ||||||||||||| | || ||| |||| |||||| ||| Sbjct: 565 cgtcgacgatgttgttccggcacggcggctcgaagttgtggtcgctgtcgcagccgcgct 506 Query: 235 gggtgtcgcactcgtcgacgaccttggc 262 ||| ||||||||||||||||||| |||| Sbjct: 505 gggagtcgcactcgtcgacgaccatggc 478 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 325 accaccccgtggacagcgccaccac 349 ||||||||||||||||||||||||| Sbjct: 412 accaccccgtggacagcgccaccac 388
>gb|AC146481.2| Oryza sativa chromosome 10 B1288B10 genomic sequence, complete sequence Length = 58734 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 175 cgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttga 234 ||||||||| |||||| ||||||||||||| | || ||| |||| |||||| ||| Sbjct: 56095 cgtcgacgatgttgttccggcacggcggctcgaagttgtggtcgctgtcgcagccgcgct 56036 Query: 235 gggtgtcgcactcgtcgacgaccttggc 262 ||| ||||||||||||||||||| |||| Sbjct: 56035 gggagtcgcactcgtcgacgaccatggc 56008 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 325 accaccccgtggacagcgccaccac 349 ||||||||||||||||||||||||| Sbjct: 55942 accaccccgtggacagcgccaccac 55918
>dbj|AK102387.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092D15, full insert sequence Length = 831 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 175 cgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttga 234 ||||||||| |||||| ||||||||||||| | || ||| |||| |||||| ||| Sbjct: 587 cgtcgacgatgttgttccggcacggcggctcgaagttgtggtcgctgtcgcagccgcgct 528 Query: 235 gggtgtcgcactcgtcgacgaccttggc 262 ||| ||||||||||||||||||| |||| Sbjct: 527 gggagtcgcactcgtcgacgaccatggc 500 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 325 accaccccgtggacagcgccaccac 349 ||||||||||||||||||||||||| Sbjct: 434 accaccccgtggacagcgccaccac 410
>ref|NM_197114.1| Oryza sativa (japonica cultivar-group) hypothetical protein (P0031G09.2), mRNA Length = 831 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 174 gcgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttg 233 ||||| |||| |||||||| |||||||| || |||| |||||||| |||||| |||| Sbjct: 431 gcgtccacgatgttgttgccgcacggcgcctcgtagttgtgctcgccgtcgcagccgtgc 372 Query: 234 agggtgtcgcactcgtcgacgacctt 259 | || |||||||||||| || ||||| Sbjct: 371 acggagtcgcactcgtccaccacctt 346 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 325 accaccccgtggacagcgccaccac 349 |||||||||| |||||||||||||| Sbjct: 271 accaccccgtcgacagcgccaccac 247
>gb|AC092211.7| Oryza sativa chromosome 10 P0031G09 genomic sequence, complete sequence Length = 17072 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 174 gcgtcgacgacgttgttgcggcacggcggctggtagccgtgctcgcggtcgcacccgttg 233 ||||| |||| |||||||| |||||||| || |||| |||||||| |||||| |||| Sbjct: 13403 gcgtccacgatgttgttgccgcacggcgcctcgtagttgtgctcgccgtcgcagccgtgc 13344 Query: 234 agggtgtcgcactcgtcgacgacctt 259 | || |||||||||||| || ||||| Sbjct: 13343 acggagtcgcactcgtccaccacctt 13318 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 325 accaccccgtggacagcgccaccac 349 |||||||||| |||||||||||||| Sbjct: 13243 accaccccgtcgacagcgccaccac 13219
>emb|CR812761.4| Zebrafish DNA sequence from clone CH211-51P7 in linkage group 14, complete sequence Length = 81870 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 13 ttacatctttatttttattttga 35 ||||||||||||||||||||||| Sbjct: 60753 ttacatctttatttttattttga 60731
>gb|AC163709.3| Gallus gallus BAC clone CH261-60F22 from chromosome ul, complete sequence Length = 210984 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 140 ggtgatgcccagagcatcccag 161 |||||||||||||||||||||| Sbjct: 26444 ggtgatgcccagagcatcccag 26423
>emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chromosome 9 Contains pseudogene similar to part of a novel gene (KIAA1688), a solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 (SLC25A6) (ANT3) pseudogene and a CpG island, complete sequence Length = 169550 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 tacatctttatttttattttg 34 ||||||||||||||||||||| Sbjct: 2049 tacatctttatttttattttg 2029
>emb|AL031255.1|HS694E4 Human DNA sequence from clone RP4-694E4 on chromosome 22q12.1-12.3 Contains the 5' end of the PISD gene for Phosphatidylserine decarboxylase, the 3' end of a novel gene (MGC50372) and two CpG islands, complete sequence Length = 69901 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ttacatctttatttttatttt 33 ||||||||||||||||||||| Sbjct: 36707 ttacatctttatttttatttt 36687
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 tccccgccttcgccgccctcg 413 ||||||||||||||||||||| Sbjct: 140487 tccccgccttcgccgccctcg 140507
>gb|AC163750.4| Pan troglodytes BAC clone CH251-295N9 from chromosome unknown, complete sequence Length = 182445 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ttacatctttatttttatttt 33 ||||||||||||||||||||| Sbjct: 110557 ttacatctttatttttatttt 110577
>gb|AC134550.5| Mus musculus BAC clone RP24-272L6 from chromosome 3, complete sequence Length = 164204 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 ttacatctttatttttatttt 33 ||||||||||||||||||||| Sbjct: 394 ttacatctttatttttatttt 414
>gb|AC119855.16| Mus musculus chromosome 3, clone RP23-243H19, complete sequence Length = 196477 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ttacatctttatttttatttt 33 ||||||||||||||||||||| Sbjct: 52389 ttacatctttatttttatttt 52369
>gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, complete sequence Length = 209825 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tttatttttattttgagggg 39 |||||||||||||||||||| Sbjct: 1800 tttatttttattttgagggg 1819
>gb|AC139675.11| Mus musculus chromosome 3, clone RP23-328D16, complete sequence Length = 204280 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 accttacatctttatttttatttt 33 |||||| ||||||||||||||||| Sbjct: 52869 accttaaatctttatttttatttt 52846
>gb|AC136702.19| Mus musculus chromosome 3, clone RP23-24N12, complete sequence Length = 209773 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 accttacatctttatttttatttt 33 |||||| ||||||||||||||||| Sbjct: 134336 accttaaatctttatttttatttt 134313
>gb|AE001388.1| Plasmodium falciparum 3D7 chromosome 2 section 25 of 73 of the complete sequence Length = 14135 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tacatctttatttttatttt 33 |||||||||||||||||||| Sbjct: 7074 tacatctttatttttatttt 7093
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gtggtggaacttgccgtcgc 381 |||||||||||||||||||| Sbjct: 2169725 gtggtggaacttgccgtcgc 2169744
>gb|AC112794.4| Mus musculus chromosome 12 clone RP24-121O24, complete sequence Length = 171520 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ttacatctttatttttattt 32 |||||||||||||||||||| Sbjct: 139377 ttacatctttatttttattt 139358
>emb|CR936364.7| M.truncatula DNA sequence from clone MTH2-193I1 on chromosome 3, complete sequence Length = 119364 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 accttacatctttatttttatttt 33 |||| ||||||||||||||||||| Sbjct: 2014 acctcacatctttatttttatttt 2037
>gb|AC095032.3| Homo sapiens chromosome 1 clone RP11-153F1, complete sequence Length = 157344 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 atctttatttttattttgag 36 |||||||||||||||||||| Sbjct: 73513 atctttatttttattttgag 73494
>gb|AC122249.4| Mus musculus BAC clone RP23-164F15 from 1, complete sequence Length = 207471 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tttatttttattttgagggg 39 |||||||||||||||||||| Sbjct: 94582 tttatttttattttgagggg 94601
>gb|AC098743.3| Mus musculus BAC clone RP23-122O4 from 1, complete sequence Length = 225868 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tttatttttattttgagggg 39 |||||||||||||||||||| Sbjct: 213601 tttatttttattttgagggg 213620
>ref|XM_725362.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02556) partial mRNA Length = 951 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tttatttttattttgagggg 39 |||||||||||||||||||| Sbjct: 405 tttatttttattttgagggg 386
>ref|XM_848126.1| PREDICTED: Canis familiaris similar to S100 calcium binding protein, zeta (LOC610592), mRNA Length = 966 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tgccgcagcgggagcccccg 320 |||||||||||||||||||| Sbjct: 677 tgccgcagcgggagcccccg 696
>emb|CR318660.16| Zebrafish DNA sequence from clone CH211-149I8 in linkage group 21, complete sequence Length = 162045 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tacatctttatttttatttt 33 |||||||||||||||||||| Sbjct: 8543 tacatctttatttttatttt 8524
>emb|BX649201.1| Human DNA sequence from clone RP11-347K2 on chromosome 1 Contains two novel genes, complete sequence Length = 100266 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 atctttatttttattttgag 36 |||||||||||||||||||| Sbjct: 84047 atctttatttttattttgag 84028
>gb|CP000318.1| Polaromonas sp. JS666 plasmid 2, complete sequence Length = 338007 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 ccgacgggtccccgccttcg 404 |||||||||||||||||||| Sbjct: 181860 ccgacgggtccccgccttcg 181879
>emb|AL391215.12| Human DNA sequence from clone RP11-408B19 on chromosome 1 Contains part of a novel gene (KIAA1026) and a CpG island, complete sequence Length = 120551 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 catctttatttttattttga 35 |||||||||||||||||||| Sbjct: 108077 catctttatttttattttga 108096
>emb|AL353896.12| Human DNA sequence from clone RP11-390J12 on chromosome 13, complete sequence Length = 89264 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 accttacatctttatttttatttt 33 ||||||||||||||||||| |||| Sbjct: 24583 accttacatctttatttttttttt 24606
>emb|AL160054.14| Human DNA sequence from clone RP11-8C21 on chromosome 9 Contains the 5' end of a novel gene (SHC3), a novel gene (HFSE-1), the CSK2 gene for CDC28 protein kinase regulatory subunit 2 (CKSHS2), the 5' end of the gene for SECIS binding protein 2 (SBP2) and three CpG islands, complete sequence Length = 206200 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 atctttatttttattttgag 36 |||||||||||||||||||| Sbjct: 64926 atctttatttttattttgag 64907
>gb|AC025161.18| Homo sapiens 12 BAC RP11-669B18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 83265 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ttacatctttatttttattt 32 |||||||||||||||||||| Sbjct: 46665 ttacatctttatttttattt 46684
>gb|AC093574.3| Homo sapiens chromosome 3 clone RP11-178K11, complete sequence Length = 151993 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tctttatttttattttgagg 37 |||||||||||||||||||| Sbjct: 148126 tctttatttttattttgagg 148145
>emb|Z79692.1|RMEXPGNS R.meliloti exp gene cluster Length = 31638 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cgccttcgccgccctcgtca 416 |||||||||||||||||||| Sbjct: 7609 cgccttcgccgccctcgtca 7628
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cgccttcgccgccctcgtca 416 |||||||||||||||||||| Sbjct: 974604 cgccttcgccgccctcgtca 974623
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ttacatctttatttttattt 32 |||||||||||||||||||| Sbjct: 32514 ttacatctttatttttattt 32495
>emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BAC clone T9A14 (ESSA project) Length = 88164 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ttacatctttatttttattt 32 |||||||||||||||||||| Sbjct: 64929 ttacatctttatttttattt 64910
>emb|AJ246003.1|HSA246003 Homo sapiens Spast gene for spastin protein Length = 110000 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 accttacatctttatttttatttt 33 ||||||||| |||||||||||||| Sbjct: 74200 accttacatttttatttttatttt 74223
>emb|BX546500.7| Zebrafish DNA sequence from clone DKEY-15L19 in linkage group 23, complete sequence Length = 237446 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tacatctttatttttatttt 33 |||||||||||||||||||| Sbjct: 51419 tacatctttatttttatttt 51400
>gb|AC103585.2| Homo sapiens chromosome 3 clone RP11-48D9, complete sequence Length = 184596 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tctttatttttattttgagg 37 |||||||||||||||||||| Sbjct: 65167 tctttatttttattttgagg 65186
>gb|AC097497.2| Homo sapiens BAC clone RP11-324J17 from 4, complete sequence Length = 195069 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 atctttatttttattttgag 36 |||||||||||||||||||| Sbjct: 40309 atctttatttttattttgag 40328
>gb|AC148340.3| Medicago truncatula chromosome 2 BAC clone mth2-22d10, complete sequence Length = 105618 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 catctttatttttattttga 35 |||||||||||||||||||| Sbjct: 20830 catctttatttttattttga 20849
>gb|AC011472.7|AC011472 Homo sapiens chromosome 19 clone CTC-510F12, complete sequence Length = 122321 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tttatttttattttgagggg 39 |||||||||||||||||||| Sbjct: 76733 tttatttttattttgagggg 76714
>gb|AC007077.2| Homo sapiens BAC clone RP11-260K8 from 2, complete sequence Length = 182019 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tttatttttattttgagggg 39 |||||||||||||||||||| Sbjct: 77238 tttatttttattttgagggg 77257
>gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana Clone T26G08 From Chromosome IV, complete sequence Length = 94770 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ttacatctttatttttattt 32 |||||||||||||||||||| Sbjct: 15975 ttacatctttatttttattt 15994
>dbj|D00672.1|ATHATSA1 Arabidopsis thaliana ATS1 gene for glycerol-3-phosphate acyltransferase, complete cds Length = 4008 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 accttacatctttatttttatttt 33 |||| ||||||||||||||||||| Sbjct: 103 acctcacatctttatttttatttt 80
>emb|BX548055.7| Zebrafish DNA sequence from clone CH211-246K22 in linkage group 20, complete sequence Length = 105935 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tacatctttatttttatttt 33 |||||||||||||||||||| Sbjct: 60839 tacatctttatttttatttt 60820
>emb|BX511124.5| Zebrafish DNA sequence from clone CH211-260P9 in linkage group 18, complete sequence Length = 149227 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tttatttttattttgagggg 39 |||||||||||||||||||| Sbjct: 25453 tttatttttattttgagggg 25434
>emb|BX004853.7| Zebrafish DNA sequence from clone DKEY-13O11, complete sequence Length = 182526 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tacatctttatttttatttt 33 |||||||||||||||||||| Sbjct: 39206 tacatctttatttttatttt 39225
>emb|AL121658.4|CNS01DS8 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 563N04 of library RPCI-11 from chromosome 2 of Homo sapiens (Human) Length = 162692 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 accttacatctttatttttatttt 33 ||||||||| |||||||||||||| Sbjct: 55460 accttacatttttatttttatttt 55483
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cggcctgggaggcgtcgacg 182 |||||||||||||||||||| Sbjct: 158754 cggcctgggaggcgtcgacg 158735
>gb|AC132325.4| Mus musculus BAC clone RP24-273K21 from chromosome 12, complete sequence Length = 152661 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ttacatctttatttttattt 32 |||||||||||||||||||| Sbjct: 112980 ttacatctttatttttattt 112999 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,850,145 Number of Sequences: 3902068 Number of extensions: 3850145 Number of successful extensions: 203342 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 202701 Number of HSP's gapped (non-prelim): 629 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)