ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478718.1| Oryza sativa (japonica cultivar-group), mRNA 72 8e-10
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 72 8e-10
3dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 72 8e-10
4dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic D... 72 8e-10
5dbj|AK111334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 8e-10
6dbj|AK108426.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-08
7gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 0.69
8ref|NM_183863.1| Oryza sativa (japonica cultivar-group), predic... 40 2.7
9ref|NM_174425.2| Bos taurus phospholipase C, gamma 1 (PLCG1), mRNA 40 2.7
10ref|XM_955382.1| Neurospora crassa OR74A hypothetical protein (N... 40 2.7
11ref|XM_325367.1| Neurospora crassa OR74A hypothetical protein (N... 40 2.7
12ref|XM_974441.1| PREDICTED: Mus musculus hypothetical protein LO... 40 2.7
13emb|Y00301.1|BTPLCII Bos taurus mRNA for phosphatidylinositol-sp... 40 2.7
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
15dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 2.7
16dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
17dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
18emb|CT025624.11| Mouse DNA sequence from clone RP24-212N20 on ch... 40 2.7
19gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 2.7
20gb|L10348.1|TTHNUSG Thermus thermophilus transcription factor (n... 40 2.7 
>ref|XM_478718.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1599

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                        
Query: 132  gcctccttgggctcctcctcgtccatgggggccgacatgccctttccccgcgtctccggc 191
            ||||||||| |||||||||| ||||||| | ||||||||| | | |||| ||||||||||
Sbjct: 1553 gcctccttgtgctcctcctcctccatggtgtccgacatgctcctccccctcgtctccggc 1494

                            
Query: 192  aggcaggctgcgaaca 207
            |||||| | |||||||
Sbjct: 1493 aggcagacggcgaaca 1478
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                            
Query: 132      gcctccttgggctcctcctcgtccatgggggccgacatgccctttccccgcgtctccggc 191
                ||||||||| |||||||||| ||||||| | ||||||||| | | |||| ||||||||||
Sbjct: 22374900 gcctccttgtgctcctcctcctccatggtgtccgacatgctcctccccctcgtctccggc 22374841

                                
Query: 192      aggcaggctgcgaaca 207
                |||||| | |||||||
Sbjct: 22374840 aggcagacggcgaaca 22374825
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>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0567H04
          Length = 181420

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                          
Query: 132    gcctccttgggctcctcctcgtccatgggggccgacatgccctttccccgcgtctccggc 191
              ||||||||| |||||||||| ||||||| | ||||||||| | | |||| ||||||||||
Sbjct: 180146 gcctccttgtgctcctcctcctccatggtgtccgacatgctcctccccctcgtctccggc 180087

                              
Query: 192    aggcaggctgcgaaca 207
              |||||| | |||||||
Sbjct: 180086 aggcagacggcgaaca 180071
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>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0406F06
          Length = 144533

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                         
Query: 132   gcctccttgggctcctcctcgtccatgggggccgacatgccctttccccgcgtctccggc 191
             ||||||||| |||||||||| ||||||| | ||||||||| | | |||| ||||||||||
Sbjct: 35967 gcctccttgtgctcctcctcctccatggtgtccgacatgctcctccccctcgtctccggc 35908

                             
Query: 192   aggcaggctgcgaaca 207
             |||||| | |||||||
Sbjct: 35907 aggcagacggcgaaca 35892
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>dbj|AK111334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-E11, full
           insert sequence
          Length = 1376

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 132 gcctccttgggctcctcctcgtccatgggggccgacatgccctttccccgcgtctccggc 191
           ||||||||| |||||||||| ||||||| | ||||||||| | | |||| ||||||||||
Sbjct: 217 gcctccttgtgctcctcctcctccatggtgtccgacatgctcctccccctcgtctccggc 158

                           
Query: 192 aggcaggctgcgaaca 207
           |||||| | |||||||
Sbjct: 157 aggcagacggcgaaca 142
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>dbj|AK108426.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-A07, full
           insert sequence
          Length = 989

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 132 gcctccttgggctcctcctcgtccatgggggccgacatgccctttccccgcgtctccggc 191
           ||||||||| |||||||||| ||||||| | ||||||||| | | |||| ||||||||||
Sbjct: 819 gcctccttgtgctcctcctcctccatggtgtccgacatgctcctccccctcgtctccggc 760

                 
Query: 192 aggcag 197
           ||||||
Sbjct: 759 aggcag 754
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 124     ccaccgtcgcctccttgggct 144
               |||||||||||||||||||||
Sbjct: 3945696 ccaccgtcgcctccttgggct 3945716
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>ref|NM_183863.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1626

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 143  ctcctcctcgtccatgggggccgacatgccctttccccgcgtctccggcaggcagg 198
            ||||||||| ||||||| | ||||||  | | | |||| |||||||||||||||||
Sbjct: 1566 ctcctcctcctccatggtgtccgacaacctcctccccctcgtctccggcaggcagg 1511
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>ref|NM_174425.2| Bos taurus phospholipase C, gamma 1 (PLCG1), mRNA
          Length = 4344

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 132  gcctccttgggctcctcctc 151
            ||||||||||||||||||||
Sbjct: 1645 gcctccttgggctcctcctc 1626
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>ref|XM_955382.1| Neurospora crassa OR74A hypothetical protein (NCU05513.1) partial
           mRNA
          Length = 1857

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 136 ccttgggctcctcctcgtcc 155
           ||||||||||||||||||||
Sbjct: 148 ccttgggctcctcctcgtcc 129
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>ref|XM_325367.1| Neurospora crassa OR74A hypothetical protein (NCU05513.1) partial
           mRNA
          Length = 1857

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 136 ccttgggctcctcctcgtcc 155
           ||||||||||||||||||||
Sbjct: 148 ccttgggctcctcctcgtcc 129
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>ref|XM_974441.1| PREDICTED: Mus musculus hypothetical protein LOC665082 (LOC665082),
           mRNA
          Length = 546

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 132 gcctccttgggctcctcctcgtcc 155
           ||||||| ||||||||||||||||
Sbjct: 363 gcctcctcgggctcctcctcgtcc 386
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>emb|Y00301.1|BTPLCII Bos taurus mRNA for phosphatidylinositol-specific phospholipase C
          Length = 4344

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 132  gcctccttgggctcctcctc 151
            ||||||||||||||||||||
Sbjct: 1645 gcctccttgggctcctcctc 1626
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                        
Query: 143      ctcctcctcgtccatgggggccgacatgccctttccccgcgtctccggcaggcagg 198
                ||||||||| ||||||| | ||||||  | | | |||| |||||||||||||||||
Sbjct: 12742962 ctcctcctcctccatggtgtccgacaacctcctccccctcgtctccggcaggcagg 12742907
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 132    gcctccttgggctcctcctcgtcc 155
              ||||| ||||||||||||||||||
Sbjct: 238318 gcctcgttgggctcctcctcgtcc 238341
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>dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0489E06
          Length = 140229

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 143   ctcctcctcgtccatgggggccgacatgccctttccccgcgtctccggcaggcagg 198
             ||||||||| ||||||| | ||||||  | | | |||| |||||||||||||||||
Sbjct: 23361 ctcctcctcctccatggtgtccgacaacctcctccccctcgtctccggcaggcagg 23306
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>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0554D10
          Length = 158723

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                      
Query: 143    ctcctcctcgtccatgggggccgacatgccctttccccgcgtctccggcaggcagg 198
              ||||||||| ||||||| | ||||||  | | | |||| |||||||||||||||||
Sbjct: 109991 ctcctcctcctccatggtgtccgacaacctcctccccctcgtctccggcaggcagg 109936
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>emb|CT025624.11| Mouse DNA sequence from clone RP24-212N20 on chromosome 14, complete
             sequence
          Length = 198113

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 132   gcctccttgggctcctcctcgtcc 155
             ||||||| ||||||||||||||||
Sbjct: 65546 gcctcctcgggctcctcctcgtcc 65523
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 132     gcctccttgggctcctcctcgtcc 155
               ||||| ||||||||||||||||||
Sbjct: 1651762 gcctcgttgggctcctcctcgtcc 1651739
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>gb|L10348.1|TTHNUSG Thermus thermophilus transcription factor (nusG) gene, complete cds
          Length = 1314

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 132 gcctccttgggctcctcctcgtcc 155
           ||||| ||||||||||||||||||
Sbjct: 838 gcctcgttgggctcctcctcgtcc 815


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,189,930
Number of Sequences: 3902068
Number of extensions: 1189930
Number of successful extensions: 90384
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 90032
Number of HSP's gapped (non-prelim): 356
length of query: 214
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 192
effective length of database: 17,147,199,772
effective search space: 3292262356224
effective search space used: 3292262356224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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