Clone Name | rbart09d07 |
---|---|
Clone Library Name | barley_pub |
>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein Length = 1020 Score = 127 bits (64), Expect = 6e-27 Identities = 64/64 (100%) Strand = Plus / Minus Query: 39 gaattcacaggttttacacaagcaaattgacagggtcgatcgtcacaggtttcacagcac 98 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1020 gaattcacaggttttacacaagcaaattgacagggtcgatcgtcacaggtttcacagcac 961 Query: 99 caca 102 |||| Sbjct: 960 caca 957
>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA, complete cds Length = 1133 Score = 58.0 bits (29), Expect = 5e-06 Identities = 65/76 (85%), Gaps = 6/76 (7%) Strand = Plus / Minus Query: 6 aactcanctgaacttgaaattactcgggcgga-----cgaattcacaggttttacacaag 60 |||||| || ||||||||||||||||||||| ||||||||||| ||||||| ||| Sbjct: 1101 aactcaactcaacttgaaattactcgggcgggacgggcgaattcacag-ttttacagaag 1043 Query: 61 caaattgacagggtcg 76 ||||||||||| |||| Sbjct: 1042 caaattgacagtgtcg 1027
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ttacacaagcaaattgaca 70 ||||||||||||||||||| Sbjct: 5770706 ttacacaagcaaattgaca 5770724
>gb|AC002307.1|HUAC002307 Homo sapiens Chromosome 16 BAC clone CIT987-SK37914 ~complete genomic sequence, complete sequence Length = 161580 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 123756 attcacaggttttacacaa 123738
>gb|AC114938.3| Homo sapiens chromosome 16 clone CTD-2244D9, complete sequence Length = 166928 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 6390 attcacaggttttacacaa 6372
>gb|AC141070.2| Homo sapiens chromosome 16 clone RP11-171B13, complete sequence Length = 161261 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 87559 attcacaggttttacacaa 87541
>gb|AC133569.4| Homo sapiens chromosome 16 clone RP11-96K14, complete sequence Length = 107932 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 3345 attcacaggttttacacaa 3327
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 ttttacacaagcaaattga 68 ||||||||||||||||||| Sbjct: 21774443 ttttacacaagcaaattga 21774461
>gb|AC137800.3| Homo sapiens chromosome 16 clone RP11-652G5, complete sequence Length = 196550 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 82011 attcacaggttttacacaa 82029
>gb|AC141293.2| Homo sapiens chromosome 16 clone RP11-51M16, complete sequence Length = 185339 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 181995 attcacaggttttacacaa 182013
>gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, complete sequence Length = 167832 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 64125 attcacaggttttacacaa 64107
>gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, complete sequence Length = 221622 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 151955 attcacaggttttacacaa 151973
>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534A03 Length = 153170 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 ttttacacaagcaaattga 68 ||||||||||||||||||| Sbjct: 91626 ttttacacaagcaaattga 91644
>gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, complete sequence Length = 182046 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 64125 attcacaggttttacacaa 64107
>gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, complete sequence Length = 184294 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 38149 attcacaggttttacacaa 38167
>gb|AC136437.2| Homo sapiens chromosome 16 clone RP11-347D23, complete sequence Length = 161397 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attcacaggttttacacaa 59 ||||||||||||||||||| Sbjct: 128089 attcacaggttttacacaa 128071 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 618,608 Number of Sequences: 3902068 Number of extensions: 618608 Number of successful extensions: 35857 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35817 Number of HSP's gapped (non-prelim): 40 length of query: 102 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 81 effective length of database: 17,151,101,840 effective search space: 1389239249040 effective search space used: 1389239249040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)