ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein 127 6e-27
2gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intr... 58 5e-06
3gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 38 4.5
4gb|AC002307.1|HUAC002307 Homo sapiens Chromosome 16 BAC clone CI... 38 4.5
5gb|AC114938.3| Homo sapiens chromosome 16 clone CTD-2244D9, comp... 38 4.5
6gb|AC141070.2| Homo sapiens chromosome 16 clone RP11-171B13, com... 38 4.5
7gb|AC133569.4| Homo sapiens chromosome 16 clone RP11-96K14, comp... 38 4.5
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
9gb|AC137800.3| Homo sapiens chromosome 16 clone RP11-652G5, comp... 38 4.5
10gb|AC141293.2| Homo sapiens chromosome 16 clone RP11-51M16, comp... 38 4.5
11gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, comp... 38 4.5
12gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, com... 38 4.5
13dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
14gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, comp... 38 4.5
15gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, com... 38 4.5
16gb|AC136437.2| Homo sapiens chromosome 16 clone RP11-347D23, com... 38 4.5

>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein
          Length = 1020

 Score =  127 bits (64), Expect = 6e-27
 Identities = 64/64 (100%)
 Strand = Plus / Minus

                                                                        
Query: 39   gaattcacaggttttacacaagcaaattgacagggtcgatcgtcacaggtttcacagcac 98
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 gaattcacaggttttacacaagcaaattgacagggtcgatcgtcacaggtttcacagcac 961

                
Query: 99   caca 102
            ||||
Sbjct: 960  caca 957



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>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA,
            complete cds
          Length = 1133

 Score = 58.0 bits (29), Expect = 5e-06
 Identities = 65/76 (85%), Gaps = 6/76 (7%)
 Strand = Plus / Minus

                                                                        
Query: 6    aactcanctgaacttgaaattactcgggcgga-----cgaattcacaggttttacacaag 60
            |||||| || |||||||||||||||||||||      ||||||||||| ||||||| |||
Sbjct: 1101 aactcaactcaacttgaaattactcgggcgggacgggcgaattcacag-ttttacagaag 1043

                            
Query: 61   caaattgacagggtcg 76
            ||||||||||| ||||
Sbjct: 1042 caaattgacagtgtcg 1027



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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 52      ttacacaagcaaattgaca 70
               |||||||||||||||||||
Sbjct: 5770706 ttacacaagcaaattgaca 5770724



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>gb|AC002307.1|HUAC002307 Homo sapiens Chromosome 16 BAC clone CIT987-SK37914  ~complete genomic
              sequence, complete sequence
          Length = 161580

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     attcacaggttttacacaa 59
              |||||||||||||||||||
Sbjct: 123756 attcacaggttttacacaa 123738



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>gb|AC114938.3| Homo sapiens chromosome 16 clone CTD-2244D9, complete sequence
          Length = 166928

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   attcacaggttttacacaa 59
            |||||||||||||||||||
Sbjct: 6390 attcacaggttttacacaa 6372



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>gb|AC141070.2| Homo sapiens chromosome 16 clone RP11-171B13, complete sequence
          Length = 161261

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    attcacaggttttacacaa 59
             |||||||||||||||||||
Sbjct: 87559 attcacaggttttacacaa 87541



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>gb|AC133569.4| Homo sapiens chromosome 16 clone RP11-96K14, complete sequence
          Length = 107932

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   attcacaggttttacacaa 59
            |||||||||||||||||||
Sbjct: 3345 attcacaggttttacacaa 3327



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 50       ttttacacaagcaaattga 68
                |||||||||||||||||||
Sbjct: 21774443 ttttacacaagcaaattga 21774461



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>gb|AC137800.3| Homo sapiens chromosome 16 clone RP11-652G5, complete sequence
          Length = 196550

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    attcacaggttttacacaa 59
             |||||||||||||||||||
Sbjct: 82011 attcacaggttttacacaa 82029



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>gb|AC141293.2| Homo sapiens chromosome 16 clone RP11-51M16, complete sequence
          Length = 185339

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     attcacaggttttacacaa 59
              |||||||||||||||||||
Sbjct: 181995 attcacaggttttacacaa 182013



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>gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, complete sequence
          Length = 167832

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    attcacaggttttacacaa 59
             |||||||||||||||||||
Sbjct: 64125 attcacaggttttacacaa 64107



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>gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, complete sequence
          Length = 221622

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     attcacaggttttacacaa 59
              |||||||||||||||||||
Sbjct: 151955 attcacaggttttacacaa 151973



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>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534A03
          Length = 153170

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 50    ttttacacaagcaaattga 68
             |||||||||||||||||||
Sbjct: 91626 ttttacacaagcaaattga 91644



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>gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, complete sequence
          Length = 182046

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    attcacaggttttacacaa 59
             |||||||||||||||||||
Sbjct: 64125 attcacaggttttacacaa 64107



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>gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, complete sequence
          Length = 184294

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    attcacaggttttacacaa 59
             |||||||||||||||||||
Sbjct: 38149 attcacaggttttacacaa 38167



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>gb|AC136437.2| Homo sapiens chromosome 16 clone RP11-347D23, complete sequence
          Length = 161397

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     attcacaggttttacacaa 59
              |||||||||||||||||||
Sbjct: 128089 attcacaggttttacacaa 128071


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 618,608
Number of Sequences: 3902068
Number of extensions: 618608
Number of successful extensions: 35857
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35817
Number of HSP's gapped (non-prelim): 40
length of query: 102
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 81
effective length of database: 17,151,101,840
effective search space: 1389239249040
effective search space used: 1389239249040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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