>HXCDA_BRARE (Q6JIY5) Homeobox protein Hox-C13a|
          Length = 306

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +2

Query: 29  QVNERANTNCTASHQRNEIRNPLMNAQNGSLAVRSSIIYTTHAAPRLAAGLLSPEPASLG 208
           Q+ E  + NC A+H R  I +P +   +G++A     +Y+  ++P       +P+ +S  
Sbjct: 32  QIMEGLSGNCPATHCRELISHPALGRHSGTIATHQGSVYSDISSPETGRQCPAPQTSSSA 91

Query: 209 RL 214
            L
Sbjct: 92  SL 93

>E2F3_HUMAN (O00716) Transcription factor E2F3 (E2F-3)|
          Length = 465

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 44  ANTNCTASHQRNEIR-NPLMNAQNGSLAVRSSIIYTTHAAPRLAAGLLSPEPASLGR 211
           + T+C++S Q   +   PL+ +  G+     S++YTT   P   AGLL  +P +LGR
Sbjct: 66  STTSCSSSLQSGAVAAGPLLPSAPGAEQTAGSLLYTTPHGPSSRAGLLQ-QPPALGR 121

>HXCDB_BRARE (Q6JIY4) Homeobox protein Hox-C13b|
          Length = 273

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 38  ERANTNCTASHQRNEIRNPLMNAQNGSLAVRSSIIY---TTHAAPRLAAGLLSPEPASLG 208
           E  + NC ASH R+ I +P +   +GSLA     +Y   TT  A R      +    SLG
Sbjct: 2   EGLSGNCPASHCRDFISHPALGRHSGSLASHQGTVYPDITTQDAGRQFPAPQASSGTSLG 61

>Y3154_MYCBO (P0A651) Hypothetical UPF0089 protein Mb3154c|
          Length = 463

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 59  TASHQRNEIRNPLMNAQNGSLAVRSSIIYTTHAAPRLAAGLLSPEPASL 205
           +AS +R   R     A   S AV + I+     A  +AAG+LSP  +SL
Sbjct: 173 SASVRRGGFRVNPSEALTASTAVMAGIVRAAKGASEIAAGVLSPAASSL 221

>Y3130_MYCTU (P0A650) Hypothetical UPF0089 protein Rv3130c/MT3216|
          Length = 463

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 59  TASHQRNEIRNPLMNAQNGSLAVRSSIIYTTHAAPRLAAGLLSPEPASL 205
           +AS +R   R     A   S AV + I+     A  +AAG+LSP  +SL
Sbjct: 173 SASVRRGGFRVNPSEALTASTAVMAGIVRAAKGASEIAAGVLSPAASSL 221

>HEMH_TROWT (Q83FJ2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 391

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 107 QNGSLAVRSSIIYTTHAAPRLAAGLLSPEPASLGR 211
           + G    R++I+++TH+ P L A    PE A  G+
Sbjct: 196 ERGFKVSRTAILFSTHSIPELDAAFSGPEDAHFGK 230

>HEMH_TROW8 (Q83H94) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 391

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 107 QNGSLAVRSSIIYTTHAAPRLAAGLLSPEPASLGR 211
           + G    R++I+++TH+ P L A    PE A  G+
Sbjct: 196 ERGFKVSRTAILFSTHSIPELDAAFSGPEDAHFGK 230

>STP2_MACMU (Q9N1A3) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 137

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +2

Query: 20  TNKQVNERANTNCTASHQRNEIRNPLMNAQNGSLAVRSSIIYTTHAAP---RLAAGLLSP 190
           +N +   R  + CT +H R         +Q GS +  SS    TH  P     ++GL S 
Sbjct: 17  SNSRPQSRTCSQCTCTHHRQTFSQSCRQSQRGSRSRSSSQSPATHQNPTGAHSSSGLQSQ 76

Query: 191 EP 196
            P
Sbjct: 77  SP 78

>ZN646_HUMAN (O15015) Zinc finger protein 646|
          Length = 1829

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 305 SEGDCAQADRERSECGPERGARQADERH 222
           S+GDC QA+ E  +CG ER     DE H
Sbjct: 725 SDGDCLQAESEGDKCGLER-----DETH 747

>GNL3_HUMAN (Q9BVP2) Guanine nucleotide-binding protein-like 3 (Nucleolar|
           GTP-binding protein 3) (Nucleostemin) (E2-induced gene
           3-protein) (Novel nucleolar protein 47) (NNP47)
          Length = 549

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 355 VDDVVDKVSTMGFSKEQVRATVRRLTESGQNVDLNVVLDKLMNDTDA 215
           VD+ VD+ S+  F+ E+    +   T +G+    + +LDK++ + DA
Sbjct: 495 VDEEVDENSSGMFAAEETGEALSEETTAGEQSTRSFILDKIIEEDDA 541

>HXC13_HUMAN (P31276) Homeobox protein Hox-C13 (Hox-3G)|
          Length = 330

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 50  TNCTASHQRNEIRNPLMNAQNGSLAVRSSIIYTTHAAPRLAAGLLSPEPA 199
           ++C ASH R+ + +P++      L      +YT   AP  AA   +P PA
Sbjct: 62  SSCPASHCRDLLPHPVLGRPPAPLGAPQGAVYTDIPAPE-AARQCAPPPA 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,749,060
Number of Sequences: 219361
Number of extensions: 1033975
Number of successful extensions: 2963
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2961
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)