>V70K_TYMV (P10357) 69 kDa protein|
          Length = 628

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
 Frame = +2

Query: 77  LVSTNCTLPPIQLIGNP*NVH------PKRIKIPPHDQSEFLPKRTSSSFLYPPIFSLRL 238
           L+ T   L  ++ +G P N+       P + ++P   +   LPK    + L P     R 
Sbjct: 339 LLQTGPRLGHLERLGQPANLRTSERSPPTKRRLPRSSEPNRLPKPLPEATLAPSYRHRRP 398

Query: 239 APQWPRPSPSLPCTADGSGSGST-NAVPARCLCQE--PPNQQKNYCIYSVRLQAPSTKPT 409
            P  P P  +LP  A  S  G   +++P   L +E  PP  +        RL +P+ +P 
Sbjct: 399 YPLLPNPPAALPSIAYTSSRGKIHHSLPKGALPKEGAPPPPR--------RLPSPAPRPQ 450

Query: 410 MPAR 421
           +P R
Sbjct: 451 LPLR 454

>FA53C_MOUSE (Q8BXQ8) Protein FAM53C|
          Length = 393

 Score = 36.2 bits (82), Expect = 0.033
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
 Frame = +2

Query: 101 PPIQLIGNP*NVHPKRIKIPPHDQSEFLPKRTSSSFLYPPIFSLRLAPQWPRPSPS---L 271
           PP+  + +P    P+++ +PP       P +     L  P+   R  P W RP+PS    
Sbjct: 90  PPLSQVLSPEPPDPEKLPVPPAP-----PSKRHCRSLSVPVDLSRWQPVW-RPAPSKLWT 143

Query: 272 PCTADGSGSGSTNAVPARCLCQEPPNQQKNYCIYSVR-LQAPS-TKPTMPARRP 427
           P    G+  G    VP     Q PP +     + S+R LQAPS +    PA RP
Sbjct: 144 PIKHRGNAGGGGPQVPQ----QSPPKR-----VSSLRFLQAPSASSQCAPAHRP 188

>V70K_TYMVC (P28478) 69 kDa protein|
          Length = 628

 Score = 35.8 bits (81), Expect = 0.043
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
 Frame = +2

Query: 77  LVSTNCTLPPIQLIGNP*NVH------PKRIKIPPHDQSEFLPKRTSSSFLYPPIFSLRL 238
           L+ T   L  ++ +G P N+       P + ++P   +   LPK    + L P     R 
Sbjct: 339 LLQTGPRLGHLECLGQPANLRTSERSPPTKRRLPRSSEPNRLPKPLPEATLAPSYRHRRS 398

Query: 239 APQWPRPSPSLPCTADGSGSGST-NAVPARCLCQE--PPNQQKNYCIYSVRLQAPSTKPT 409
            P  P P  +LP  A  S  G   +++P   L +E  PP  +        RL +P+  P 
Sbjct: 399 YPFLPNPPAALPSIAYTSSRGKIHHSLPKGALPKEGAPPPPR--------RLPSPAPHPQ 450

Query: 410 MPAR 421
           +P R
Sbjct: 451 LPLR 454

>V70K_TYMVA (P20131) 69 kDa protein|
          Length = 628

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = +2

Query: 152 KIPPHDQSEFLPKRTSSSFLYPPIFSLRLAPQWPRPSPSLPCTADGSGSGST-NAVPARC 328
           ++P   +   LP     + L P     R  P  P P  +LP  A  SG G   +++P   
Sbjct: 370 RLPRPSEPNCLPSSLPEATLAPSYRHRRSHPLLPNPPAALPPIAYTSGRGKIHHSLPKGA 429

Query: 329 LCQEPPNQQKNYCIYSVRLQAPSTKPTMPAR 421
           L +E P           RL +P+T P  P R
Sbjct: 430 LPKEGPPPPPR------RLPSPATPPQSPLR 454

>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)|
          Length = 1845

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 216 HQSSPSASRRNGHDPPPRCPVQPTXXXXXXPTRCRRGAFAKNR 344
           H++ PSASR     P PR P  P         R  R A A +R
Sbjct: 267 HETRPSASRSRRRSPSPRRPATPPKPAAVGTRRSTRQALAHSR 309

>ZAN_PIG (Q28983) Zonadhesin precursor|
          Length = 2476

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +2

Query: 236 LAPQWPRPSPSL----PCTADGSGSGSTNAVPARCLCQEPPNQQKNYCIYSVRLQAPS 397
           +AP  P+PSP+L    P       + +T   P   +   PPN     C   V  Q+P+
Sbjct: 652 IAPTTPQPSPTLVPTQPAAVVMPSTSATTVTPRTTIASCPPNAHFERCACPVSCQSPT 709

>FTSH_MYCLE (Q9CD58) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 787

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 158 PPHDQSEFLPKRTSSSFLYPPIFSLRLAPQWPRPSPSLP 274
           PP   +   P +    + YPP      +P WP+P+PS P
Sbjct: 703 PPGWHAPGWPPQQPPDYWYPPEQQPSQSPYWPQPAPSYP 741

>MOSA_MAIZE (P15268) Autonomous transposable element EN-1 mosaic protein|
           (Suppressor-mutator system protein) (SPM)
          Length = 621

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +2

Query: 215 PPIFSLRLAPQWPRPSPSLPCTADGSGSGSTNAVPARCLCQEPPNQ 352
           PP       P+    SP LP  + GSGSGS +A P       PP+Q
Sbjct: 562 PPPMPWGFPPRGQSQSPGLPSHSPGSGSGSHHASP-------PPDQ 600

>APC_HUMAN (P25054) Adenomatous polyposis coli protein (Protein APC)|
          Length = 2843

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 210  SIHQSSPSASRRNGHDPPPRCPVQPTXXXXXXPTRCRRGAFAKNRPTNKRI 362
            S   S+P+ ++ +G    P  PV+P        TR R+ A +KN    +R+
Sbjct: 1754 SASSSAPNKNQLDGKKKKPTSPVKPIPQNTEYRTRVRKNADSKNNLNAERV 1804

>RREB1_HUMAN (Q92766) RAS-responsive element-binding protein 1 (RREB-1)|
           (Raf-responsive zinc finger protein LZ321)
          Length = 755

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 251 PRPSPSLPCTADGSGSGSTNAVPARCLCQEPPNQ 352
           P P PSLP T   SG   +   PA     EPP Q
Sbjct: 42  PAPGPSLPVTLGPSGILESPMAPAPAATPEPPAQ 75

>ULK1_HUMAN (O75385) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)|
           (Unc-51-like kinase 1)
          Length = 1050

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 257 PSPSLPCTADGSGSGSTNAV-PARCLCQEP---PNQQKNYCIYSVRLQAPS 397
           PSPS PC++  S SG       +RC    P   P Q +NY      LQ+P+
Sbjct: 402 PSPSPPCSSSPSPSGRAGPFSSSRCGASVPIPVPTQVQNYQRIERNLQSPT 452

>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
            protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
            ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
            sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +2

Query: 140  PKRIKIPPHDQSEFLPKRTSSSFLYPPIFSLRLAPQWPRPSPSLPCTADGSGSGS--TNA 313
            P  I +P  D   F P    SS ++PP     +    P P P+   T D SGS    T+ 
Sbjct: 958  PSSIPVPSPD---FPPPPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSK 1014

Query: 314  VPARCLCQEPPNQQKNYCIYS 376
              +    + PP  Q+N  I S
Sbjct: 1015 TSSPGGKKPPPTPQRNSSIKS 1035

>SCR11_ARATH (P82630) Hypothetical protein SCRL11 precursor|
          Length = 86

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 260 SPSLPCTADGSGSGSTNAVPARCLCQEPPNQQK 358
           SPS  C  D  GS S +A+P  C C   P+ ++
Sbjct: 43  SPSYTCFLDLLGSKSASAMPKNCKCTPLPHNRR 75

>GT2D1_MOUSE (Q9JI57) General transcription factor II-I repeat domain-containing|
           protein 1 (GTF2I repeat domain-containing protein 1)
           (Binding factor for early enhancer)
          Length = 1104

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 19/87 (21%)
 Frame = +2

Query: 134 VHPKRIKIPPHDQSEFLPKRTSSSFLYP------------------PIFSLRLAPQWPRP 259
           +H +  K+ P D +      + ++FLY                   P+    L   WP P
Sbjct: 232 LHGQASKVAPQDLTPTATPSSMANFLYSTSMPNHTIRELKQEVPTCPLTPSDLGMGWPVP 291

Query: 260 SPSLPCTADGSG-SGSTNAVPARCLCQ 337
            P +P T D S   G T A PA  L Q
Sbjct: 292 EPHVPSTQDFSDCCGQTPAGPAGPLIQ 318

>ATRX_DROME (Q9GQN5) Transcriptional regulator ATRX homolog (EC 3.6.1.-)|
           (ATP-dependent helicase XNP) (X-linked nuclear protein)
           (dXNP) (d-xnp)
          Length = 1311

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
 Frame = +3

Query: 123 TPKMSTQKESRSHHMTNLNFYQKERALLFSIHQSSPSASRRNGHDPPPRC-----PVQPT 287
           +P  S  K+SR+H   N+    K      S    + + S  N  +  P C     P++  
Sbjct: 45  SPPRSNTKQSRTHK--NVKASGKATVSSSSDSDQAVANSSANDEEKEPVCKIRIVPLEKL 102

Query: 288 XXXXXXPTRCRRGAFAKNRPTNKRITVSTQYGYKLPLPSRQCR 416
                   R  RG+  KN   N         G KL LP+R+ R
Sbjct: 103 LASPKTKERPSRGSQQKNVTINDSSDEEPLKGSKLVLPARKSR 145

>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 995

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 171 NLNFYQKERALLFSIHQSSPSASRRNGHDPPPRCPVQPT 287
           N+ F + E    +++H+    ASR   HDPPPR P  PT
Sbjct: 702 NIRFSRHET---YTVHKRYYCASR---HDPPPRRPPAPT 734

>PGCA_HUMAN (P16112) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP) (Chondroitin sulfate
            proteoglycan core protein 1) [Contains: Aggrecan core
            protein 2]
          Length = 2415

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
 Frame = +2

Query: 215  PPIFSLRLAPQWPRPS------PSLPCTADGSGSGSTNAVPARCLCQEPPNQQKNYC 367
            P   S+  +P+W R S      P+  C  +  G+G+        +C  PP     +C
Sbjct: 2142 PTDASIPASPEWKRESESTAAAPARSCAEEPCGAGTCKETEGHVICLCPPGYTGEHC 2198

>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 182  LPKRTSSSFLYPPIFSLRLAPQWPRPSPSLPCTADGSGSGSTNAVPARCLCQEPPNQQKN 361
            LP+ TS +   PP       P  P P+P LP +   + SG+T +   + L  + P  Q  
Sbjct: 2597 LPQSTSKAASGPP-------PTLP-PAPPLPQSTSKAASGATQSDSGKTLTLDVPKTQSK 2648

Query: 362  YCIYSVRLQAPSTKP--TMPA 418
              +  V    P+ KP  T PA
Sbjct: 2649 DKVVPV---PPTDKPSTTTPA 2666

>CATA_RHOCA (P37743) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 576

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -1

Query: 382 PY*VDTVILLLVGRFLAKAPRRHRVGXXXXXAVGCTGQRGGGSWPLRREAEGEDWWIEKR 203
           P   D  +  L GR    A RR R       A G   +R G +W + R + G DW + K 
Sbjct: 283 PEAADVTVRALAGRTRIWAARRRRPSPRGSRAPGPRIRRAG-TWAISRCSSGHDWELTKS 341

Query: 202 RA 197
            A
Sbjct: 342 PA 343

>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 932

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 218 PIFSLRLAPQWPRPSPSLPCTADGSGSGSTNAVPARCLCQEPPNQQ 355
           P FS + AP+ P P+P  P   D     S  A   R +   P   Q
Sbjct: 752 PAFSFQAAPRAPSPAPRPPSRRDAGLQVSLGAAETRSVATGPMTPQ 797

>RPN2_SCHPO (O74762) 26S proteasome regulatory subunit rpn2|
          Length = 965

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 22/70 (31%), Positives = 35/70 (50%)
 Frame = +3

Query: 21  LLRMKESSSITEQNPALFY*YQRIVHCHQSS*LVTPKMSTQKESRSHHMTNLNFYQKERA 200
           LLR+  SS +TE  P  F   + +VH + +S  V  K+  +  S++   + L  YQ    
Sbjct: 204 LLRLLLSSFLTETEPDYFSVGKCVVHLNDAS--VAAKLLMKLSSQNDDKSLLTAYQ---- 257

Query: 201 LLFSIHQSSP 230
           L F +  S+P
Sbjct: 258 LAFDLEDSAP 267

>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)|
          Length = 4687

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 290  SGSGSTNAVPARCLCQEPPNQQKNYCIYSVRLQ 388
            S SGS  AVP+ C    PPNQ+    +  +  Q
Sbjct: 983  SSSGSEAAVPSVCFLVPPPNQEAQEAVARLEAQ 1015

>CLAP1_HUMAN (Q7Z460) CLIP-associating protein 1 (Cytoplasmic linker-associated|
           protein 1) (Multiple asters homolog 1)
          Length = 1538

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = +2

Query: 143 KRIKIPPHDQSEFLPKRTSSSFLYPPIFSLRLAPQWPRPSPSLPCTADGSGSGSTNAVPA 322
           KR KIP   +S+   + TS     P    L  + + PRPS S  C+ D S   S +  PA
Sbjct: 716 KRSKIP---RSQGCSRETS-----PNRIGLARSSRIPRPSMSQGCSRDTSRESSRDTSPA 767

Query: 323 R 325
           R
Sbjct: 768 R 768

>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +2

Query: 101 PPIQLIGNP*NVHPKRIKIPPHD-QSEFLPKRTSSSFLYP----PIFSLRLAPQWPRPSP 265
           PP+    +P     + ++IPP   ++  LP  + +S L P    P  S  LAP    P P
Sbjct: 785 PPLSEASSPLACLLQSLQIPPEQPEAPCLPPESPASALEPEPARPPLSA-LAPPHGSPDP 843

Query: 266 SLPCTADGSGSG 301
            +P    G GSG
Sbjct: 844 PVPELLTGRGSG 855

>TIM54_NEUCR (Q9C0Q7) Mitochondrial import inner membrane translocase subunit|
           tim-54
          Length = 425

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
 Frame = +2

Query: 236 LAPQWPRPSPSLPCTADGSGSGSTNAVPARCLCQEP------PNQQKNY---CIYSVRLQ 388
           +AP  P P P  P  A   GS ST   PA    +E       P Q K Y     YS    
Sbjct: 188 VAPAEPAPLPPTPAPAAAEGSTSTEDKPAEEKKEEEAPKPKRPPQPKPYNTTSDYSSETL 247

Query: 389 APST----KPTMPARRP 427
            P T     P +P R P
Sbjct: 248 HPLTPQELTPAVPIREP 264

>CCD95_BOVIN (Q29RS4) Coiled-coil domain-containing protein 95|
          Length = 244

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
 Frame = +2

Query: 140 PKRIKIPPHDQSEFLPKRTSSSFL-------YPPIFSLRLAPQWPRPSPSLP 274
           P  + +PP         R  S +L       YPP  S  LA Q P PSP  P
Sbjct: 107 PSSLSLPPSTGFPLQASRAPSPYLSSLASPTYPPFPSDYLALQLPEPSPLRP 158

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 209 LYPPIFSLRLAPQWPRPSPSLPCTADGSGSGST 307
           +YP +F LRL   W   + SLP      GSG T
Sbjct: 363 MYPSLFPLRLKRPWHAGTSSLPDGRGDLGSGLT 395

>VASP_CANFA (P50551) Vasodilator-stimulated phosphoprotein (VASP)|
          Length = 383

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 123 TPKMSTQKESRSHHMTNLNFYQKERALLFSIHQSSPSASRRNGHDPPPRCPVQP 284
           TP     +++R   +  LNF  KE A  F+   +S   +   G  PPP  P  P
Sbjct: 75  TPTFHQWRDARQ--VWGLNFGSKEDATQFAAAMASALEALEGGGPPPPPPPAAP 126

>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 290  SGSGSTNAVPARCLCQEPPNQQKNYCIYSVRLQ 388
            S SGS  AVP+ C    PPNQ+    +  +  Q
Sbjct: 980  SSSGSEAAVPSVCFLVPPPNQEVQEAVTRLEAQ 1012


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,388,970
Number of Sequences: 219361
Number of extensions: 1317729
Number of successful extensions: 3951
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3938
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)