>NOLC1_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)|
           (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar
           and coiled-body phosphoprotein 1)
          Length = 699

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 24/63 (38%), Positives = 36/63 (57%)
 Frame = -2

Query: 451 DERLQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEXXXXXXXXXXXGFIDLQTHSIK 272
           D R+ DNS+ AK GA   +G +A ++L   +G+ FRHE           G I +Q +SIK
Sbjct: 636 DSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIK 695

Query: 271 FNN 263
           F++
Sbjct: 696 FDS 698

>NOLC1_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)|
           (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar
           and coiled-body phosphoprotein 1)
          Length = 704

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = -2

Query: 451 DERLQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEXXXXXXXXXXXGFIDLQTHSIK 272
           D R+ DNS+ AK GA   +G +A ++L   +G+ FRHE           G I +Q +S+K
Sbjct: 641 DSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVK 700

Query: 271 FNN 263
           F++
Sbjct: 701 FDS 703

>SRP40_YEAST (P32583) Suppressor protein SRP40|
          Length = 406

 Score = 35.0 bits (79), Expect = 0.092
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = -2

Query: 442 LQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEXXXXXXXXXXXGFIDLQTHSIKFNN 263
           L DN+Y    GA   +G KA E LG+VRG+DF              G I L++ S KF +
Sbjct: 350 LTDNTY---KGAAGTWGEKANEKLGRVRGKDFTKNKNKMKRGSYRGGSITLESGSYKFQD 406

>RPSB_ANASP (Q03065) RNA polymerase sigma-B factor|
          Length = 332

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -3

Query: 438 KIIRIGLRVVLTLGTV--RRHRRFLDKLEEGILGTRRPRRSAEPT 310
           K+I+  LR+V+++     +R+  FLD ++EG LG  R     +PT
Sbjct: 100 KMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPT 144

>VG12_BPP22 (P03006) Replicative DNA helicase (EC 3.6.1.-) (Replication protein|
           gp12)
          Length = 458

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 420 LRVVLTLGTVRRHRRFLDKLEEGILGTRRPRRSAEPTRVGSLI 292
           +R  ++ GT+    R +D+L + +   R+PR   +P R+G +I
Sbjct: 109 MREPISNGTLDASGRAMDELVKRLSSIRKPRNEVKPVRLGEII 151

>YADL_ECOLI (P37017) Hypothetical protein yadL precursor|
          Length = 201

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +1

Query: 100 KTERAGYNNSMLLLLCCKAGMPSLLPFSKTDRL-----TTVRMGKCHKTCTNDA 246
           K  R G ++S++L     A + S+L ++ TD +     TTV MG C  T  ND+
Sbjct: 5   KNLRYGLSSSVVLA----ASLFSVLSYAATDSIGLTVITTVEMGTCTATLVNDS 54

>YMFP_ECOLI (P75981) Hypothetical protein ymfP in lambdoid prophage e14 region|
          Length = 263

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 445 RLQDNSYWA-KGGADSGYGAKAQEILGQVRGRDFRH 341
           R+ +  YW  +GGAD  Y   A+E+ G  R   +RH
Sbjct: 96  RVIERYYWTPQGGADGDYVVWAKEVPGITRAWTYRH 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,251,683
Number of Sequences: 219361
Number of extensions: 1212241
Number of successful extensions: 3163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3163
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)