ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SDC25_YEAST (P14771) Guanine nucleotide exchange factor SDC25 29 3.7
2METX_CAUCR (Q9AAS1) Homoserine O-acetyltransferase (EC 2.3.1.31)... 28 8.3

>SDC25_YEAST (P14771) Guanine nucleotide exchange factor SDC25|
          Length = 1252

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
 Frame = +1

Query: 16   KKNFLFQNYTLSSIKNAKCTKDYGQLQTD------KNP-LMLINHSLLDFHEDEPFPPLN 174
            KKNF+     L S+ +A C   +G   +D       NP  +++ H L   H+++ +   N
Sbjct: 1085 KKNFINYRNELKSLHSAPCVPFFGVYLSDLTFTDSGNPDYLVLEHGLKGVHDEKKYINFN 1144

Query: 175  L*SKLTNL 198
              S+L ++
Sbjct: 1145 KRSRLVDI 1152



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>METX_CAUCR (Q9AAS1) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 382

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 82  YGQLQTDKNPLMLINHSLL-DFHEDEPFPPLNL*SKLTNL*IPRKPL 219
           YGQL  DK+  +LI H+L  D H   P P          L  P KPL
Sbjct: 41  YGQLNADKSNAVLICHALTGDQHVASPHPTTGKPGWWQRLVGPGKPL 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,481,744
Number of Sequences: 219361
Number of extensions: 546461
Number of successful extensions: 881
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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