ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart09c01 |
|---|---|
| Clone Library Name | barley_pub |
>PSD7_ARATH (O24412) Probable 26S proteasome non-ATPase regulatory subunit 7| (26S proteasome regulatory subunit rpn8) (MOV34 protein) Length = 308 Score = 117 bits (294), Expect = 9e-27 Identities = 58/66 (87%), Positives = 62/66 (93%) Frame = -3 Query: 429 NLLPNLNVNELIKAXAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDSKPA 250 NLLPNLNVNEL+KA +VKTNDMMLVIYLSSLIRSVIALHNLINNK+LNKEHEKAEDSKP Sbjct: 243 NLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLINNKLLNKEHEKAEDSKPV 302 Query: 249 AIPTAA 232 AIP + Sbjct: 303 AIPATS 308
>PSD7_HUMAN (P51665) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Mov34 protein homolog) Length = 324 Score = 75.5 bits (184), Expect = 5e-14 Identities = 34/55 (61%), Positives = 47/55 (85%) Frame = -3 Query: 429 NLLPNLNVNELIKAXAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAE 265 NLLP++++ E +KA +KTND M+V+YL+SLIRSV+ALHNLINNK+ N++ EK E Sbjct: 235 NLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
>PSD7_MOUSE (P26516) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Mov34 protein) Length = 321 Score = 74.7 bits (182), Expect = 9e-14 Identities = 34/55 (61%), Positives = 46/55 (83%) Frame = -3 Query: 429 NLLPNLNVNELIKAXAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAE 265 NLLP+ ++ E +KA +KTND M+V+YL+SLIRSV+ALHNLINNK+ N++ EK E Sbjct: 235 NLLPDASLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
>PSD7_DROME (P26270) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Proteasome subunit p39B) (Protein Mov34) Length = 337 Score = 68.6 bits (166), Expect = 6e-12 Identities = 33/61 (54%), Positives = 47/61 (77%), Gaps = 1/61 (1%) Frame = -3 Query: 429 NLLPNLNVNELIKAXAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAE-DSKP 253 NLLP++ ++ VKTND MLV+YL+S++RS+IALHNLINNK+ N++ E+ + DSK Sbjct: 237 NLLPDITNDQFTGTMYVKTNDQMLVVYLASMVRSIIALHNLINNKLANRDAEEGKSDSKE 296 Query: 252 A 250 A Sbjct: 297 A 297
>RPN8_NEUCR (Q8WZY4) 26S proteasome regulatory subunit rpn-8| Length = 352 Score = 58.9 bits (141), Expect = 5e-09 Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 13/71 (18%) Frame = -3 Query: 429 NLLPNLNV-------------NELIKAXAVKTNDMMLVIYLSSLIRSVIALHNLINNKML 289 NLLPNL+ +EL A ++KTND ++ IYLSSLIR++ A H+LI NK+ Sbjct: 243 NLLPNLSTPKSGPGATGTNADSELNHAMSIKTNDQLMAIYLSSLIRAITAFHDLIENKIQ 302 Query: 288 NKEHEKAEDSK 256 N++ ++ D+K Sbjct: 303 NRQQQEENDAK 313
>RPN8_ASHGO (Q75F44) 26S proteasome regulatory subunit RPN8| Length = 326 Score = 54.3 bits (129), Expect = 1e-07 Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 18/77 (23%) Frame = -3 Query: 429 NLLPNL-----------------NVNELIKAXAVKTNDMMLVIYLSSLIRSVIALHNLIN 301 NLLPNL + N L KA VKTND ++VIY+S+L+R++IA NLI Sbjct: 234 NLLPNLGSPDEEAPATKKDDVLASSNTLQKALTVKTNDELMVIYISNLMRAIIAFDNLIE 293 Query: 300 NKMLNKEHEKAE-DSKP 253 NK+ NK+ ++A+ D +P Sbjct: 294 NKIKNKKLQEAKRDPEP 310
>RPN8_CANGA (Q6FMD8) 26S proteasome regulatory subunit RPN8| Length = 329 Score = 52.8 bits (125), Expect = 4e-07 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 17/75 (22%) Frame = -3 Query: 429 NLLPNLNVNE-----------------LIKAXAVKTNDMMLVIYLSSLIRSVIALHNLIN 301 NLLPNL NE L +A VKTND ++VIY+++L+R++IA +LI Sbjct: 234 NLLPNLGYNEETDVSATSNDMVTASNNLQRALTVKTNDELMVIYITNLVRAIIAFDDLIE 293 Query: 300 NKMLNKEHEKAEDSK 256 NKM NK+ ++ + + Sbjct: 294 NKMQNKKLQEERNKE 308
>RPN8_YEAST (Q08723) 26S proteasome regulatory subunit RPN8| Length = 337 Score = 52.8 bits (125), Expect = 4e-07 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 17/67 (25%) Frame = -3 Query: 429 NLLPNLNV-----------------NELIKAXAVKTNDMMLVIYLSSLIRSVIALHNLIN 301 NLLPNL N L KA VKTND ++VIY+S+L+RS+IA +LI Sbjct: 233 NLLPNLGTPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAFDDLIE 292 Query: 300 NKMLNKE 280 NK+ NK+ Sbjct: 293 NKIQNKK 299
>RPN8_SCHPO (O74440) 26S proteasome regulatory subunit rpn8| Length = 324 Score = 44.7 bits (104), Expect = 1e-04 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 10/69 (14%) Frame = -3 Query: 429 NLLPNLNVNELI----------KAXAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKE 280 NLLPN+ ++ +A V +ND ++ IY+SS++R+VIALH+L+++ +K Sbjct: 242 NLLPNIFSGPVVSEQALESEAQRAFNVNSNDQLMSIYISSIVRAVIALHDLLDSLAASKA 301 Query: 279 HEKAEDSKP 253 E+ +D KP Sbjct: 302 MEQ-QDIKP 309
>ATC1_YEAST (P13586) Calcium-transporting ATPase 1 (EC 3.6.3.8) (Golgi| Ca(2+)-ATPase) Length = 950 Score = 30.0 bits (66), Expect = 2.5 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -3 Query: 414 LNVNELIKAXAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEH 277 LNV L K K ++ L YL+ +R + + NL NN ++EH Sbjct: 396 LNVLSLDKNKKTKNSNGNLKNYLTEDVRETLTIGNLCNNASFSQEH 441
>NIFZ_FRAAL (P46040) Protein nifZ| Length = 192 Score = 29.6 bits (65), Expect = 3.2 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = -3 Query: 420 PNLNVNELIKAXAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDSK----- 256 P +++ E++ + + + +YL I IA N L +E E AED++ Sbjct: 27 PAISIGEILVEAGTRGQVINVGLYLQEHIVYAIAFENGRIVGALERELEAAEDAEDATQA 86 Query: 255 -PAAIPTAAGS 226 PAA PTAA + Sbjct: 87 EPAATPTAAAA 97
>EP15_MOUSE (P42567) Epidermal growth factor receptor substrate 15 (Protein| Eps15) (AF-1p protein) Length = 897 Score = 28.9 bits (63), Expect = 5.5 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 306 INNKMLNKEHEKAEDSKPAAIPTAAGS*TRPCLPRHG 196 I ML + K+ED PA +P G+ TRPC P G Sbjct: 754 IAKPMLEETASKSEDVPPA-LPPKVGTPTRPCPPPPG 789
>HISZ_LEPIN (Q8F737) ATP phosphoribosyltransferase regulatory subunit| Length = 344 Score = 28.9 bits (63), Expect = 5.5 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -3 Query: 426 LLPNLNVNELIKAXAVKTNDMMLVIYLSSLIRS--VIALHNLINNKMLNKEHEKAEDS 259 LL NVNE+ K K N L+ LSSL+ + + +L N +N L+K +K+ S Sbjct: 194 LLYQKNVNEIQKIFGEKKNHTDLIRLLSSLVLNFDLNSLKNSLNINSLSKNLQKSLSS 251
>HISZ_LEPIC (P62359) ATP phosphoribosyltransferase regulatory subunit| Length = 344 Score = 28.9 bits (63), Expect = 5.5 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -3 Query: 426 LLPNLNVNELIKAXAVKTNDMMLVIYLSSLIRS--VIALHNLINNKMLNKEHEKAEDS 259 LL NVNE+ K K N L+ LSSL+ + + +L N +N L+K +K+ S Sbjct: 194 LLYQKNVNEIQKIFGEKKNHTDLIRLLSSLVLNFDLNSLKNSLNINSLSKNLQKSLSS 251
>IWS1_CRYNE (Q5KJR1) Transcription factor IWS1| Length = 475 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 355 HIPVFPYPECHRSPQFDQQQDAKQ 284 H+PV P PE P+ D Q D +Q Sbjct: 27 HLPVEPTPEVQEEPESDHQDDDEQ 50
>TAOK2_RAT (Q9JLS3) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand| and one amino acid protein 2) Length = 1235 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +3 Query: 198 HAEANKGAFSSRLP*VWRLASNPRPSHAP 284 + + NK F SRLP W NPR + P Sbjct: 1117 YPKTNKNGFRSRLPVPWPRQGNPRTTQHP 1145 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,160,695 Number of Sequences: 219361 Number of extensions: 976422 Number of successful extensions: 1990 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1957 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1989 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
