ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479314.1| Oryza sativa (japonica cultivar-group), mRNA 143 5e-31
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
3dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
4dbj|AK109637.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
5gb|AY107778.1| Zea mays PCO145234 mRNA sequence 76 1e-10
6ref|NM_188844.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
8dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
9dbj|AK106075.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
10dbj|AK099262.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
11dbj|AK070763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
12ref|NM_188843.2| Oryza sativa (japonica cultivar-group), mRNA 64 4e-07
13dbj|AK109437.2| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
14dbj|AK111373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
15dbj|AK061012.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
16gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
17gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
18gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare str... 52 0.002
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
20dbj|AK065416.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
21gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
22ref|XM_386503.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 42 1.5
23gb|AC012229.8| Homo sapiens chromosome 15, clone RP11-182L7, com... 42 1.5
24gb|AC068135.5| Homo sapiens BAC clone RP11-764E7 from 2, complet... 42 1.5
25gb|AC156541.7| Mus musculus chromosome 1, clone RP23-478I8, comp... 42 1.5
26gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complet... 42 1.5
27gb|AC101783.12| Mus musculus chromosome 1, clone RP24-136B19, co... 42 1.5
28gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.5
29gb|AC153524.3| Mus musculus 10 BAC RP23-349H12 (Roswell Park Can... 42 1.5
30gb|AC102616.7| Mus musculus chromosome 18, clone RP23-425L21, co... 40 5.8
31gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, com... 40 5.8
32gb|AC118010.11| Mus musculus chromosome 5, clone RP23-451E8, com... 40 5.8
33gb|AC134605.5| Mus musculus BAC clone RP23-42E17 from chromosome... 40 5.8
34gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence 40 5.8
35emb|AL445201.14| Human DNA sequence from clone RP11-358L16 on ch... 40 5.8
36emb|BX323012.5| Zebrafish DNA sequence from clone DKEYP-46F3, co... 40 5.8
37gb|AE011964.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.8
38gb|AC010614.8| Homo sapiens chromosome 19 clone CTD-2518G19, com... 40 5.8
39dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.8
40gb|AC153873.5| Mus musculus 10 BAC RP23-87M12 (Roswell Park Canc... 40 5.8
41gb|AC155334.7| Mus musculus 6 BAC RP24-420O24 (Roswell Park Canc... 40 5.8
42gb|AC102493.8| Mus musculus chromosome 8, clone RP24-546F2, comp... 40 5.8
43emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chrom... 40 5.8 
>ref|XM_479314.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1320

 Score =  143 bits (72), Expect = 5e-31
 Identities = 156/184 (84%)
 Strand = Plus / Minus

                                                                        
Query: 249  gcgcagccatgttgctctccacgaaggccttcatctcctggaaaaccttgccggcgtcag 308
            |||| ||| |||||||||  |||||  |||| || ||||| || |||||||||||||| |
Sbjct: 1147 gcgccgccctgttgctctggacgaacaccttgatgtcctgcaagaccttgccggcgtcgg 1088

                                                                        
Query: 309  cgactgcggggaagccgtagaacccgtggaagccgtctgggtactccgccaccttgacct 368
            |||   | |||||||||||||| || |||||| |||| ||| ||||||||||||  ||| 
Sbjct: 1087 cgagctccgggaagccgtagaagccatggaaggcgtcggggaactccgccacctccaccg 1028

                                                                        
Query: 369  tcacccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
             |  |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 1027 ccttccccttccgccgcagcacgtcgacgtaccgccgctgccagtcctgcagcgggtcga 968

                
Query: 429  accc 432
            ||||
Sbjct: 967  accc 964
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  143 bits (72), Expect = 5e-31
 Identities = 156/184 (84%)
 Strand = Plus / Plus

                                                                            
Query: 249      gcgcagccatgttgctctccacgaaggccttcatctcctggaaaaccttgccggcgtcag 308
                |||| ||| |||||||||  |||||  |||| || ||||| || |||||||||||||| |
Sbjct: 26742786 gcgccgccctgttgctctggacgaacaccttgatgtcctgcaagaccttgccggcgtcgg 26742845

                                                                            
Query: 309      cgactgcggggaagccgtagaacccgtggaagccgtctgggtactccgccaccttgacct 368
                |||   | |||||||||||||| || |||||| |||| ||| ||||||||||||  ||| 
Sbjct: 26742846 cgagctccgggaagccgtagaagccatggaaggcgtcggggaactccgccacctccaccg 26742905

                                                                            
Query: 369      tcacccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
                 |  |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 26742906 ccttccccttccgccgcagcacgtcgacgtaccgccgctgccagtcctgcagcgggtcga 26742965

                    
Query: 429      accc 432
                ||||
Sbjct: 26742966 accc 26742969



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                        
Query: 373      ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
                ||||||||||||||||| | ||||||||||||| | |||||| |||||||||||||
Sbjct: 26740019 ccccttccgccgcagcatggcggcgtaccgccggtcccagtcctgcagcgggtcga 26740074



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                        
Query: 377      ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaaccc 432
                |||||||||||||   |||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 26737514 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccc 26737569
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>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1003_C06
          Length = 143168

 Score =  143 bits (72), Expect = 5e-31
 Identities = 156/184 (84%)
 Strand = Plus / Plus

                                                                         
Query: 249   gcgcagccatgttgctctccacgaaggccttcatctcctggaaaaccttgccggcgtcag 308
             |||| ||| |||||||||  |||||  |||| || ||||| || |||||||||||||| |
Sbjct: 89643 gcgccgccctgttgctctggacgaacaccttgatgtcctgcaagaccttgccggcgtcgg 89702

                                                                         
Query: 309   cgactgcggggaagccgtagaacccgtggaagccgtctgggtactccgccaccttgacct 368
             |||   | |||||||||||||| || |||||| |||| ||| ||||||||||||  ||| 
Sbjct: 89703 cgagctccgggaagccgtagaagccatggaaggcgtcggggaactccgccacctccaccg 89762

                                                                         
Query: 369   tcacccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
              |  |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 89763 ccttccccttccgccgcagcacgtcgacgtaccgccgctgccagtcctgcagcgggtcga 89822

                 
Query: 429   accc 432
             ||||
Sbjct: 89823 accc 89826



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                     
Query: 373   ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
             ||||||||||||||||| | ||||||||||||| | |||||| |||||||||||||
Sbjct: 86876 ccccttccgccgcagcatggcggcgtaccgccggtcccagtcctgcagcgggtcga 86931



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                     
Query: 377   ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaaccc 432
             |||||||||||||   |||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 84371 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccc 84426
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>dbj|AK109637.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E04, full
            insert sequence
          Length = 1320

 Score =  143 bits (72), Expect = 5e-31
 Identities = 156/184 (84%)
 Strand = Plus / Minus

                                                                        
Query: 249  gcgcagccatgttgctctccacgaaggccttcatctcctggaaaaccttgccggcgtcag 308
            |||| ||| |||||||||  |||||  |||| || ||||| || |||||||||||||| |
Sbjct: 1147 gcgccgccctgttgctctggacgaacaccttgatgtcctgcaagaccttgccggcgtcgg 1088

                                                                        
Query: 309  cgactgcggggaagccgtagaacccgtggaagccgtctgggtactccgccaccttgacct 368
            |||   | |||||||||||||| || |||||| |||| ||| ||||||||||||  ||| 
Sbjct: 1087 cgagctccgggaagccgtagaagccatggaaggcgtcggggaactccgccacctccaccg 1028

                                                                        
Query: 369  tcacccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
             |  |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 1027 ccttccccttccgccgcagcacgtcgacgtaccgccgctgccagtcctgcagcgggtcga 968

                
Query: 429  accc 432
            ||||
Sbjct: 967  accc 964
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>gb|AY107778.1| Zea mays PCO145234 mRNA sequence
          Length = 691

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                       
Query: 317 gggaagccgtagaacccgtggaagccgtctgggtactccgccaccttgaccttcaccccc 376
           |||||||||||||| ||||||||   | |||||||||| ||||||   |||| |  ||||
Sbjct: 463 gggaagccgtagaagccgtggaacatgcctgggtactcggccaccagcacctccttcccc 404

                                                 
Query: 377 ttccgccgcagcacgtcggcgtaccgccgctgccagtc 414
           ||||| ||||||||||||||||| || |||||||||||
Sbjct: 403 ttccggcgcagcacgtcggcgtagcgtcgctgccagtc 366
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>ref|NM_188844.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1041

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                   
Query: 373 ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
           ||||||||||||||||| | ||||||||||||| | |||||| |||||||||||||
Sbjct: 894 ccccttccgccgcagcatggcggcgtaccgccggtcccagtcctgcagcgggtcga 839
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                        
Query: 373      ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
                ||||||||||||||||| | ||||||||| ||| | ||||||||||||||||||||
Sbjct: 11430129 ccccttccgccgcagcatgccggcgtacctccggtcccagtcttgcagcgggtcga 11430074
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>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1386G10
          Length = 121827

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                      
Query: 373    ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
              ||||||||||||||||| | ||||||||| ||| | ||||||||||||||||||||
Sbjct: 117838 ccccttccgccgcagcatgccggcgtacctccggtcccagtcttgcagcgggtcga 117783
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>dbj|AK106075.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H11, full
           insert sequence
          Length = 1312

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                   
Query: 373 ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
           ||||||||||||||||| | ||||||||| ||| | ||||||||||||||||||||
Sbjct: 994 ccccttccgccgcagcatgccggcgtacctccggtcccagtcttgcagcgggtcga 939
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>dbj|AK099262.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004G05, full
            insert sequence
          Length = 1371

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 373  ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
            ||||||||||||||||| | ||||||||| ||| | ||||||||||||||||||||
Sbjct: 1006 ccccttccgccgcagcatgccggcgtacctccggtcccagtcttgcagcgggtcga 951
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>dbj|AK070763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066M03, full
            insert sequence
          Length = 1378

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 373  ccccttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcga 428
            ||||||||||||||||| | ||||||||| ||| | ||||||||||||||||||||
Sbjct: 1031 ccccttccgccgcagcatgccggcgtacctccggtcccagtcttgcagcgggtcga 976
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>ref|NM_188843.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1165

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 377 ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaaccc 432
           |||||||||||||   |||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 941 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccc 886
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>dbj|AK109437.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B02, full
           insert sequence
          Length = 1171

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 377 ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaaccc 432
           |||||||||||||   |||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 947 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccc 892
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>dbj|AK111373.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A08, full
           insert sequence
          Length = 1139

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 377 ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaaccc 432
           |||||||||||||   |||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 119 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccc 174
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>dbj|AK061012.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B04, full
           insert sequence
          Length = 1165

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 377 ttccgccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcgaaccc 432
           |||||||||||||   |||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 941 ttccgccgcagcatcccggcgtaccgccgctgccagtcctgcagcgtgtcgtaccc 886
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>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0122P24,
              complete sequence
          Length = 136104

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                            
Query: 382    ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcg 427
              ||||||||  ||||||||||||| ||||||||| || |||||||||
Sbjct: 114644 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcg 114599
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>gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0023E20, complete sequence
          Length = 130827

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 382  ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcg 427
            ||||||||  ||||||||||||| ||||||||| || |||||||||
Sbjct: 7015 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcg 6970
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>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042K08, from chromosome 2, complete sequence
          Length = 164628

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 382   ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcg 427
             ||||||||  ||||||||||||| ||||||||| || |||||||||
Sbjct: 83324 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcg 83279
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                             
Query: 382     ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcg 427
               ||||||||  ||||||||||||| ||||||||| || |||||||||
Sbjct: 7356154 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcg 7356199
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>dbj|AK065416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022N12, full
           insert sequence
          Length = 1377

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 382 ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcg 427
           ||||||||  ||||||||||||| ||||||||| || |||||||||
Sbjct: 980 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcg 935
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                             
Query: 382     ccgcagcacgtcggcgtaccgccgctgccagtcttgcagcgggtcg 427
               ||||||||  ||||||||||||| ||||||||| || |||||||||
Sbjct: 7426240 ccgcagcatctcggcgtaccgcctctgccagtcctggagcgggtcg 7426285
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>ref|XM_386503.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06327.1)
           partial mRNA
          Length = 471

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 206 cttggatcacggcatcttcct 226
           |||||||||||||||||||||
Sbjct: 313 cttggatcacggcatcttcct 293
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>gb|AC012229.8| Homo sapiens chromosome 15, clone RP11-182L7, complete sequence
          Length = 119723

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   cactacacaaaacacaatgat 170
             |||||||||||||||||||||
Sbjct: 56618 cactacacaaaacacaatgat 56638
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>gb|AC068135.5| Homo sapiens BAC clone RP11-764E7 from 2, complete sequence
          Length = 164736

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    atcatgaagctatatttttct 64
             |||||||||||||||||||||
Sbjct: 54707 atcatgaagctatatttttct 54687
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>gb|AC156541.7| Mus musculus chromosome 1, clone RP23-478I8, complete sequence
          Length = 173297

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 162    cacaatgatcaaatcaacaaa 182
              |||||||||||||||||||||
Sbjct: 172450 cacaatgatcaaatcaacaaa 172470
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>gb|AC008269.4| Homo sapiens BAC clone RP11-95H11 from 2, complete sequence
          Length = 161935

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 172    aaatcaacaaatcttattttc 192
              |||||||||||||||||||||
Sbjct: 118633 aaatcaacaaatcttattttc 118613
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>gb|AC101783.12| Mus musculus chromosome 1, clone RP24-136B19, complete sequence
          Length = 169909

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 162   cacaatgatcaaatcaacaaa 182
             |||||||||||||||||||||
Sbjct: 46522 cacaatgatcaaatcaacaaa 46502
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 392     tcggcgtaccgccgctgccag 412
               |||||||||||||||||||||
Sbjct: 4447404 tcggcgtaccgccgctgccag 4447384
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>gb|AC153524.3| Mus musculus 10 BAC RP23-349H12 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 167574

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    tatatttttctgtccatccct 74
             |||||||||||||||||||||
Sbjct: 39903 tatatttttctgtccatccct 39883
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>gb|AC102616.7| Mus musculus chromosome 18, clone RP23-425L21, complete sequence
          Length = 192276

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 146    atcacactacacaaaacacaatgatcaa 173
              ||||| ||||||||||||||| ||||||
Sbjct: 126209 atcactctacacaaaacacaaggatcaa 126182
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>gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, complete sequence
          Length = 198815

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 146    atcacactacacaaaacacaatgatcaa 173
              ||||| ||||||||||||||| ||||||
Sbjct: 138930 atcactctacacaaaacacaaggatcaa 138957
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>gb|AC118010.11| Mus musculus chromosome 5, clone RP23-451E8, complete sequence
          Length = 184672

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     tatcttttctctatttcatt 32
              ||||||||||||||||||||
Sbjct: 136604 tatcttttctctatttcatt 136623
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>gb|AC134605.5| Mus musculus BAC clone RP23-42E17 from chromosome 14, complete sequence
          Length = 216097

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    tcttttctctatttcattag 34
             ||||||||||||||||||||
Sbjct: 75677 tcttttctctatttcattag 75658
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>gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence
          Length = 283075

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    aatcaacaaatcttattttc 192
              ||||||||||||||||||||
Sbjct: 261706 aatcaacaaatcttattttc 261725
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>emb|AL445201.14| Human DNA sequence from clone RP11-358L16 on chromosome 10 Contains a
             AFR GTPase-activating protein (MRIP2) pseudogene, a novel
             gene, gene LOC93550, the 3' end of a KIAA0592 pseudogene
             and three CpG islands, complete sequence
          Length = 179193

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ttatcttttctctatttcat 31
             ||||||||||||||||||||
Sbjct: 18941 ttatcttttctctatttcat 18922
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>emb|BX323012.5| Zebrafish DNA sequence from clone DKEYP-46F3, complete sequence
          Length = 175238

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     cgagcttaaacaaacatatt 101
              ||||||||||||||||||||
Sbjct: 113841 cgagcttaaacaaacatatt 113860
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>gb|AE011964.1| Xanthomonas axonopodis pv. citri str. 306,  section 342 of 469 of the
            complete genome
          Length = 10942

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 294  ccttgccggcgtcagcgact 313
            ||||||||||||||||||||
Sbjct: 8316 ccttgccggcgtcagcgact 8297
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>gb|AC010614.8| Homo sapiens chromosome 19 clone CTD-2518G19, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   ccttgaccttcacccccttc 379
             ||||||||||||||||||||
Sbjct: 11283 ccttgaccttcacccccttc 11302
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 275     gccttcatctcctggaaaaccttg 298
               |||||||||||||||||| |||||
Sbjct: 1146722 gccttcatctcctggaaatccttg 1146699
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>gb|AC153873.5| Mus musculus 10 BAC RP23-87M12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207864

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   attgtaatcagtgatcacac 152
             ||||||||||||||||||||
Sbjct: 20753 attgtaatcagtgatcacac 20734
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>gb|AC155334.7| Mus musculus 6 BAC RP24-420O24 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 153509

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    attgtaatcagtgatcacac 152
              ||||||||||||||||||||
Sbjct: 144360 attgtaatcagtgatcacac 144341
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>gb|AC102493.8| Mus musculus chromosome 8, clone RP24-546F2, complete sequence
          Length = 175883

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 158   aaaacacaatgatcaaatcaacaa 181
             |||||||||||||||| |||||||
Sbjct: 43963 aaaacacaatgatcaactcaacaa 43986
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>emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chromosome 2, complete
             sequence
          Length = 144844

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   aatcaacaaatcttattttc 192
             ||||||||||||||||||||
Sbjct: 10556 aatcaacaaatcttattttc 10537


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,754,577
Number of Sequences: 3902068
Number of extensions: 3754577
Number of successful extensions: 87812
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87497
Number of HSP's gapped (non-prelim): 310
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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