ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart09b11 |
|---|---|
| Clone Library Name | barley_pub |
>GNEFR_HUMAN (Q9UGK8) Guanine nucleotide exchange factor-related protein| (Deafness locus associated putative guanine nucleotide exchange factor) (DelGEF) Length = 458 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = -3 Query: 363 GTSINPHRSKP--HFRNTARLNFSCGVDYSVRHCLLPASAASVKASQTKHQEPDA 205 GT N KP +++ L CG +S+ C LPA A V+ + + PDA Sbjct: 367 GTEANVWAPKPVQALLSSSGLLVGCGAGHSLALCQLPAHPALVQDPKVTYLSPDA 421
>HEMH_SHIFL (Q83SE5) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 320 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -3 Query: 288 DYSVRHCLLPASAASVKASQTKHQEPD 208 DY+ H + A A SV+AS KH EPD Sbjct: 161 DYADNHDYINALANSVRASFAKHGEPD 187
>HEMH_ECOLI (P23871) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 320 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -3 Query: 288 DYSVRHCLLPASAASVKASQTKHQEPD 208 DY+ H + A A SV+AS KH EPD Sbjct: 161 DYADNHDYINALANSVRASFAKHGEPD 187
>HEMH_ECOL6 (Q8FK83) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 320 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -3 Query: 288 DYSVRHCLLPASAASVKASQTKHQEPD 208 DY+ H + A A SV+AS KH EPD Sbjct: 161 DYADNHDYINALANSVRASFAKHGEPD 187
>HEMH_ECO57 (Q8XD39) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 320 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -3 Query: 288 DYSVRHCLLPASAASVKASQTKHQEPD 208 DY+ H + A A SV+AS KH EPD Sbjct: 161 DYADNHDYINALANSVRASFAKHGEPD 187
>RP1L1_MOUSE (Q8CGM2) Retinitis pigmentosa 1-like 1 protein (Retinitis| pigmentosa 1-like protein 1) Length = 1859 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 10/71 (14%) Frame = +2 Query: 113 PSPPSCSRSMYTSGNSDLRSPETDRVFFAGQ----------ASGS*CFVCEALTEAAEAG 262 P PS S S + DLRSP + + SGS C VC + AG Sbjct: 714 PQSPSNSPSAGNQASEDLRSPFSSSLDLQEPQATSKATTIAVSGSDC-VCHSTRSVEPAG 772 Query: 263 SKQCRTE*STP 295 +C+ STP Sbjct: 773 DTKCQAHSSTP 783
>DPOL_HPBDB (P17192) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 788 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/42 (38%), Positives = 18/42 (42%) Frame = -3 Query: 225 KHQEPDA*PAKKTRSVSGERRSELPLVYIDREHDGGEGGCNM 100 +HQ PD K + RR P I R HD E CNM Sbjct: 206 QHQVPDGTTTSKINGRAENRRRRAPAKSISRPHD-SERDCNM 246
>TNAP3_MACFA (Q4R8W3) Tumor necrosis factor, alpha-induced protein 3 (EC| 3.-.-.-) Length = 790 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = +2 Query: 119 PPSCSRSMYTSGNSDLRSPETDRVFFAGQASGS*CFVCEALTEAAEAGSKQCR 277 PPSC + + + +RSP AG + + C A T G+ +CR Sbjct: 556 PPSCHQRSKSDPSQLVRSPSPHSCHRAGNDAPAGCLSQAARTPGDRTGTSKCR 608
>PROA_CLOTE (Q896G4) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 428 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +1 Query: 259 RQQAMPNGVIDTARKIEP-GSVSEMWLAPVGIN 354 R M NG+I+ A +P G V MW P GIN Sbjct: 78 RVNDMVNGLIEVAELPDPIGEVLNMWKRPNGIN 110
>TNAP3_HUMAN (P21580) Tumor necrosis factor, alpha-induced protein 3 (EC| 3.-.-.-) (Putative DNA-binding protein A20) (Zinc finger protein A20) Length = 790 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = +2 Query: 119 PPSCSRSMYTSGNSDLRSPETDRVFFAGQASGS*CFVCEALTEAAEAGSKQCR 277 PPSC + + + +RSP AG + + C A T G+ +CR Sbjct: 556 PPSCHQRSKSDPSRLVRSPSPHSCHRAGNDAPAGCLSQAARTPGDRTGTSKCR 608
>EFNA4_MOUSE (O08542) Ephrin-A4 precursor (EPH-related receptor tyrosine kinase| ligand 4) (LERK-4) Length = 206 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -3 Query: 84 ARIMQSFKCSVP*FPWNSIRFNEKVNQ 4 A Q + CS+P P++ +RF+EK+ + Sbjct: 91 ANAFQRWNCSMPFAPFSPVRFSEKIQR 117
>CCSA_GALSU (P31564) Cytochrome c biogenesis protein ccsA| Length = 306 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = +1 Query: 82 SYWS--TLHVTTSLAAVVFAVYVHER*LRSSLAGNRSRLLRWSGVRFLMLCLRG 237 SYWS + ++FA+Y+H R + S G +S ++ G + +C G Sbjct: 239 SYWSWDPKETWALITWIIFAIYLHTR-INKSWQGKKSAIVAGFGFVVVWICYLG 291
>3HAO_MOUSE (Q78JT3) 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6)| (3-HAO) (3-hydroxyanthranilic acid dioxygenase) (3-hydroxyanthranilate oxygenase) Length = 286 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 377 ALADQGHQLIPTGASHISETLPGSIFLAVSITP 279 ALA L+P G S++ E GS+ L+V+ P Sbjct: 247 ALAPDDSLLVPAGTSYVWERAQGSVALSVTQDP 279
>HXB4_FUGRU (O13074) Homeobox protein Hox-B4 (HOXB-4)| Length = 251 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +2 Query: 110 PPSPPSCSRSMYTSGNSDLRSPETDRVFF 196 PP PPSC ++ ++ G S S D V + Sbjct: 115 PPPPPSCGQTPHSQGASSPASTRKDPVVY 143
>Y325_METJA (Q57771) Hypothetical protein MJ0325| Length = 308 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/67 (25%), Positives = 30/67 (44%) Frame = +1 Query: 109 TSLAAVVFAVYVHER*LRSSLAGNRSRLLRWSGVRFLMLCLRGFDXXXXXRQQAMPNGVI 288 T A+V ++ +H+ + + AGNR + L L+G R + NG + Sbjct: 180 TDKMAMVRSIQIHDNDFKEAKAGNR-----------VGLALKGITTDELDRGMILSNGEL 228 Query: 289 DTARKIE 309 A++IE Sbjct: 229 KVAKEIE 235
>DPOL_HPBDC (P30028) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 787 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -3 Query: 225 KHQEPDA*PAKKTRSVSGERRSELPLVYIDREHDGGEGGCNM 100 +HQ PD +K + RR P I R HD + GCNM Sbjct: 206 QHQIPDGATTRKINGRAENRRRGDPAKSISRPHD-PKRGCNM 246 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,236,731 Number of Sequences: 219361 Number of extensions: 908924 Number of successful extensions: 2607 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2550 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2607 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
