ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart09b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY541586.1| Hordeum vulgare WRKY transcription factor (wrky38... 765 0.0
2emb|AJ536667.1|HVU536667 Hordeum vulgare mRNA for putative WRKY1... 757 0.0
3emb|Z48431.1|AFABF2 A.fatua mRNA for DNA-binding protein (clone ... 48 0.021
4tpg|BK005031.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 46 0.084
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
6dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
7dbj|AK119644.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
8dbj|AK106282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.084
9ref|XM_464332.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.33
10gb|AY676927.1| Oryza sativa (indica cultivar-group) transcriptio... 44 0.33
11gb|AY541677.1| Oryza sativa (japonica cultivar-group) WRKY trans... 44 0.33
12gb|AC111140.11| Mus musculus chromosome 3, clone RP23-369L16, co... 44 0.33
13gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 44 0.33
14tpg|BK005074.1| TPA: TPA_exp: Oryza sativa (indica cultivar-grou... 44 0.33
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
16dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
17gb|AC116736.14| Mus musculus chromosome 3, clone RP23-370O17, co... 44 0.33
18dbj|AK058773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
19gb|AC118226.7| Mus musculus chromosome 5, clone RP23-372N19, com... 44 0.33
20emb|AL450399.16| Mouse DNA sequence from clone RP23-286I5 on chr... 44 0.33
21ref|NM_185080.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
22ref|NM_185081.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
23ref|XM_470254.1| Oryza sativa (japonica cultivar-group), predic... 42 1.3
24ref|XM_459835.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 1.3
25gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.3
27gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 42 1.3
28emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 42 1.3
29gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
30dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
31dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
33dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
34gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genom... 42 1.3
35dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
36dbj|AP002970.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
37dbj|AK062544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
38gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
39emb|AL844876.4|CNS08CAZ Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.3
40emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.3
41ref|XM_479587.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
42emb|AL591135.4| Human DNA sequence from clone RP11-296E7 on chro... 40 5.2
43emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment ... 40 5.2
44emb|CR352288.9| Zebrafish DNA sequence from clone CH211-123P18 i... 40 5.2
45gb|AC010798.9| Homo sapiens, clone RP11-470B24, complete sequence 40 5.2
46dbj|AB074972.2| Oryza sativa (japonica cultivar-group) OsEIL2 mR... 40 5.2
47gb|AC018972.6| Homo sapiens chromosome 18, clone RP11-756M1, com... 40 5.2
48dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
49dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
50dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 5.2
51emb|BX842667.2| Mouse DNA sequence from clone RP24-319D9 on chro... 40 5.2
52dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
53dbj|AK105095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
54dbj|AK070555.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
55dbj|AK060806.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
56emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119... 40 5.2
57emb|AL929433.10| Mouse DNA sequence from clone RP23-193M23 on ch... 40 5.2
58gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 5.2
59emb|AL928922.7| Mouse DNA sequence from clone RP23-431J22 on chr... 40 5.2 
>gb|AY541586.1| Hordeum vulgare WRKY transcription factor (wrky38) gene, complete cds
          Length = 1667

 Score =  765 bits (386), Expect = 0.0
 Identities = 386/386 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    gacttgattgactttctcattgaatcgaatcgagttccatggaaattatggaacggaaca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1662 gacttgattgactttctcattgaatcgaatcgagttccatggaaattatggaacggaaca 1603

                                                                        
Query: 61   tttgaatgactgcattatcctagctactggagtacattacatgttacaacctccctcgcc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1602 tttgaatgactgcattatcctagctactggagtacattacatgttacaacctccctcgcc 1543

                                                                        
Query: 121  gccgtcgtgttcgcggtctatgtacacgagcggtaactccgatcttcgctcgccggaaac 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 gccgtcgtgttcgcggtctatgtacacgagcggtaactccgatcttcgctcgccggaaac 1483

                                                                        
Query: 181  cgatcgcgtcttcttcgctggtcaggcgtccggttcttgatgctttgtctgcgaggcttt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1482 cgatcgcgtcttcttcgctggtcaggcgtccggttcttgatgctttgtctgcgaggcttt 1423

                                                                        
Query: 241  gacggaggcggcggaggcaggcagcaagcaatgccgaacggagtaatcgacaccgcaaga 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 gacggaggcggcggaggcaggcagcaagcaatgccgaacggagtaatcgacaccgcaaga 1363

                                                                        
Query: 301  aaaattgagccgggcagtgtttctgaaatgtggcttgctcctgtggggattaattgatgt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 aaaattgagccgggcagtgtttctgaaatgtggcttgctcctgtggggattaattgatgt 1303

                                      
Query: 361  ccctggtcggcgagagctcgaggatc 386
            ||||||||||||||||||||||||||
Sbjct: 1302 ccctggtcggcgagagctcgaggatc 1277
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>emb|AJ536667.1|HVU536667 Hordeum vulgare mRNA for putative WRKY1 protein
          Length = 1454

 Score =  757 bits (382), Expect = 0.0
 Identities = 385/386 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    gacttgattgactttctcattgaatcgaatcgagttccatggaaattatggaacggaaca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1427 gacttgattgactttctcattgaatcgaatcgagttccatggaaattatggaacggaaca 1368

                                                                        
Query: 61   tttgaatgactgcattatcctagctactggagtacattacatgttacaacctccctcgcc 120
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1367 tttgaatgactgcattatcctagctactggagtacattacatgttataacctccctcgcc 1308

                                                                        
Query: 121  gccgtcgtgttcgcggtctatgtacacgagcggtaactccgatcttcgctcgccggaaac 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1307 gccgtcgtgttcgcggtctatgtacacgagcggtaactccgatcttcgctcgccggaaac 1248

                                                                        
Query: 181  cgatcgcgtcttcttcgctggtcaggcgtccggttcttgatgctttgtctgcgaggcttt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 cgatcgcgtcttcttcgctggtcaggcgtccggttcttgatgctttgtctgcgaggcttt 1188

                                                                        
Query: 241  gacggaggcggcggaggcaggcagcaagcaatgccgaacggagtaatcgacaccgcaaga 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1187 gacggaggcggcggaggcaggcagcaagcaatgccgaacggagtaatcgacaccgcaaga 1128

                                                                        
Query: 301  aaaattgagccgggcagtgtttctgaaatgtggcttgctcctgtggggattaattgatgt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 aaaattgagccgggcagtgtttctgaaatgtggcttgctcctgtggggattaattgatgt 1068

                                      
Query: 361  ccctggtcggcgagagctcgaggatc 386
            ||||||||||||||||||||||||||
Sbjct: 1067 ccctggtcggcgagagctcgaggatc 1042
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>emb|Z48431.1|AFABF2 A.fatua mRNA for DNA-binding protein (clone ABF2)
          Length = 1283

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 343  gtggggattaattgatgtccctggtcggcgagagctcgaggatc 386
            |||||||||| || | ||||||| | ||||||||||||||||||
Sbjct: 1164 gtggggattagttcacgtccctgctgggcgagagctcgaggatc 1121
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>tpg|BK005031.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
            transcription factor 28 (WRKY28) gene, complete cds
          Length = 4123

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 364  tggtcggcgagagctcgaggatc 386
            |||||||||||||||||||||||
Sbjct: 4115 tggtcggcgagagctcgaggatc 4093
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 364      tggtcggcgagagctcgaggatc 386
                |||||||||||||||||||||||
Sbjct: 26126677 tggtcggcgagagctcgaggatc 26126699
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>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0062J02
          Length = 151636

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 364    tggtcggcgagagctcgaggatc 386
              |||||||||||||||||||||||
Sbjct: 105922 tggtcggcgagagctcgaggatc 105944
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>dbj|AK119644.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-G04, full
            insert sequence
          Length = 1335

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 364  tggtcggcgagagctcgaggatc 386
            |||||||||||||||||||||||
Sbjct: 1012 tggtcggcgagagctcgaggatc 990
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>dbj|AK106282.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-A04, full
            insert sequence
          Length = 1413

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 364  tggtcggcgagagctcgaggatc 386
            |||||||||||||||||||||||
Sbjct: 1090 tggtcggcgagagctcgaggatc 1068
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>ref|XM_464332.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1047

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 364  tggtcggcgagagctcgaggat 385
            ||||||||||||||||||||||
Sbjct: 1039 tggtcggcgagagctcgaggat 1018
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>gb|AY676927.1| Oryza sativa (indica cultivar-group) transcription factor WRKY09
            (WRKY09) mRNA, complete cds
          Length = 1047

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 364  tggtcggcgagagctcgaggat 385
            ||||||||||||||||||||||
Sbjct: 1039 tggtcggcgagagctcgaggat 1018
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>gb|AY541677.1| Oryza sativa (japonica cultivar-group) WRKY transcription factor
            (wrky38) gene, complete cds
          Length = 2112

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 364  tggtcggcgagagctcgaggat 385
            ||||||||||||||||||||||
Sbjct: 1547 tggtcggcgagagctcgaggat 1526
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>gb|AC111140.11| Mus musculus chromosome 3, clone RP23-369L16, complete sequence
          Length = 236182

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 298    agaaaaattgagccgggcagtg 319
              ||||||||||||||||||||||
Sbjct: 215035 agaaaaattgagccgggcagtg 215056
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 244     ggaggcggcggaggcaggcagc 265
               ||||||||||||||||||||||
Sbjct: 3607298 ggaggcggcggaggcaggcagc 3607277
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>tpg|BK005074.1| TPA: TPA_exp: Oryza sativa (indica cultivar-group) WRKY transcription
            factor 71 (WRKY71) gene, complete cds
          Length = 1393

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 364  tggtcggcgagagctcgaggat 385
            ||||||||||||||||||||||
Sbjct: 1385 tggtcggcgagagctcgaggat 1364
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 364     tggtcggcgagagctcgaggat 385
               ||||||||||||||||||||||
Sbjct: 4544415 tggtcggcgagagctcgaggat 4544394
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>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1297_C09
          Length = 163378

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 364   tggtcggcgagagctcgaggat 385
             ||||||||||||||||||||||
Sbjct: 79794 tggtcggcgagagctcgaggat 79773
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>gb|AC116736.14| Mus musculus chromosome 3, clone RP23-370O17, complete sequence
          Length = 180168

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 298    agaaaaattgagccgggcagtg 319
              ||||||||||||||||||||||
Sbjct: 146161 agaaaaattgagccgggcagtg 146140
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>dbj|AK058773.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-A01, full
           insert sequence
          Length = 536

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 364 tggtcggcgagagctcgaggat 385
           ||||||||||||||||||||||
Sbjct: 113 tggtcggcgagagctcgaggat 92
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>gb|AC118226.7| Mus musculus chromosome 5, clone RP23-372N19, complete sequence
          Length = 173599

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 300  aaaaattgagccgggcagtgtt 321
            ||||||||||||||||||||||
Sbjct: 9634 aaaaattgagccgggcagtgtt 9655
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>emb|AL450399.16| Mouse DNA sequence from clone RP23-286I5 on chromosome X, complete
             sequence
          Length = 207922

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 296   caagaaaaattgagccgggcagtgtt 321
             |||||||||| |||||||||||||||
Sbjct: 37994 caagaaaaatggagccgggcagtgtt 37969
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>ref|NM_185080.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 588

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 243 cggaggcggcggaggcaggca 263
           |||||||||||||||||||||
Sbjct: 67  cggaggcggcggaggcaggca 47
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>ref|NM_185081.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 612

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 cggaggcggcggaggcaggca 263
           |||||||||||||||||||||
Sbjct: 446 cggaggcggcggaggcaggca 466
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>ref|XM_470254.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 627

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 cggaggcggcggaggcaggca 263
           |||||||||||||||||||||
Sbjct: 400 cggaggcggcggaggcaggca 420
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>ref|XM_459835.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E12738g)
           partial mRNA
          Length = 1182

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 317 gtgtttctgaaatgtggcttg 337
           |||||||||||||||||||||
Sbjct: 305 gtgtttctgaaatgtggcttg 325
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>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21,
              complete sequence
          Length = 151267

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 244    ggaggcggcggaggcaggcag 264
              |||||||||||||||||||||
Sbjct: 111149 ggaggcggcggaggcaggcag 111169
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 243      cggaggcggcggaggcaggca 263
                |||||||||||||||||||||
Sbjct: 34623521 cggaggcggcggaggcaggca 34623501



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 243     cggaggcggcggaggcaggca 263
               |||||||||||||||||||||
Sbjct: 3096984 cggaggcggcggaggcaggca 3097004
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>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
             sequence
          Length = 164236

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 243   cggaggcggcggaggcaggca 263
             |||||||||||||||||||||
Sbjct: 81238 cggaggcggcggaggcaggca 81218
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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 317    gtgtttctgaaatgtggcttg 337
              |||||||||||||||||||||
Sbjct: 943864 gtgtttctgaaatgtggcttg 943884
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>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05,
             complete sequence
          Length = 101799

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 243   cggaggcggcggaggcaggca 263
             |||||||||||||||||||||
Sbjct: 19997 cggaggcggcggaggcaggca 20017
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 243      cggaggcggcggaggcaggca 263
                |||||||||||||||||||||
Sbjct: 23134611 cggaggcggcggaggcaggca 23134631



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 243      cggaggcggcggaggcaggca 263
                |||||||||||||||||||||
Sbjct: 15217628 cggaggcggcggaggcaggca 15217648



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 117      cgccgccgtcgtgttcgcgg 136
                ||||||||||||||||||||
Sbjct: 27361719 cgccgccgtcgtgttcgcgg 27361738
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 244      ggaggcggcggaggcaggcag 264
                |||||||||||||||||||||
Sbjct: 19189251 ggaggcggcggaggcaggcag 19189271
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 243      cggaggcggcggaggcaggca 263
                |||||||||||||||||||||
Sbjct: 34713593 cggaggcggcggaggcaggca 34713573



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 243     cggaggcggcggaggcaggca 263
               |||||||||||||||||||||
Sbjct: 3097095 cggaggcggcggaggcaggca 3097115
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 240      tgacggaggcggcggaggcag 260
                |||||||||||||||||||||
Sbjct: 18069740 tgacggaggcggcggaggcag 18069760



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 114      cctcgccgccgtcgtgttcg 133
                ||||||||||||||||||||
Sbjct: 28402357 cctcgccgccgtcgtgttcg 28402338
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>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete
             sequence
          Length = 129302

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 243   cggaggcggcggaggcaggca 263
             |||||||||||||||||||||
Sbjct: 19812 cggaggcggcggaggcaggca 19832
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>dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0054L14
          Length = 150022

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 240   tgacggaggcggcggaggcag 260
             |||||||||||||||||||||
Sbjct: 96981 tgacggaggcggcggaggcag 97001
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>dbj|AP002970.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504D03
          Length = 139201

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 240   tgacggaggcggcggaggcag 260
             |||||||||||||||||||||
Sbjct: 46181 tgacggaggcggcggaggcag 46201
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>dbj|AK062544.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G05, full
           insert sequence
          Length = 1046

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 243 cggaggcggcggaggcaggca 263
           |||||||||||||||||||||
Sbjct: 154 cggaggcggcggaggcaggca 134
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 243      cggaggcggcggaggcaggca 263
                |||||||||||||||||||||
Sbjct: 23062802 cggaggcggcggaggcaggca 23062822



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 243      cggaggcggcggaggcaggca 263
                |||||||||||||||||||||
Sbjct: 15171911 cggaggcggcggaggcaggca 15171931



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 117      cgccgccgtcgtgttcgcgg 136
                ||||||||||||||||||||
Sbjct: 27287319 cgccgccgtcgtgttcgcgg 27287338
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>emb|AL844876.4|CNS08CAZ Oryza sativa chromosome 12, . BAC OSJNBa0063F10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 153687

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 243   cggaggcggcggaggcaggca 263
             |||||||||||||||||||||
Sbjct: 38290 cggaggcggcggaggcaggca 38270
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>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135323

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 243   cggaggcggcggaggcaggca 263
             |||||||||||||||||||||
Sbjct: 43786 cggaggcggcggaggcaggca 43766
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>ref|XM_479587.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2104

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 ggcggcggaggcaggcagca 266
           ||||||||||||||||||||
Sbjct: 491 ggcggcggaggcaggcagca 510
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>emb|AL591135.4| Human DNA sequence from clone RP11-296E7 on chromosome 6 Contains a
             RhoGAP and PH domain-containing KIAA1424 pseudogene and an
             adenylate kinase 3 (AK3) pseudogene, complete sequence
          Length = 39565

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    atcctagctactggagtaca 96
             ||||||||||||||||||||
Sbjct: 30094 atcctagctactggagtaca 30113
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>emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment 19/24
          Length = 295650

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    ctttgacggaggcggcggag 256
              ||||||||||||||||||||
Sbjct: 141357 ctttgacggaggcggcggag 141376
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>emb|CR352288.9| Zebrafish DNA sequence from clone CH211-123P18 in linkage group 16,
             complete sequence
          Length = 103979

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   ggcagtgtttctgaaatgtg 332
             ||||||||||||||||||||
Sbjct: 48941 ggcagtgtttctgaaatgtg 48960
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>gb|AC010798.9| Homo sapiens, clone RP11-470B24, complete sequence
          Length = 176148

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 87     ctggagtacattacatgttacaac 110
              |||||||| |||||||||||||||
Sbjct: 162567 ctggagtaaattacatgttacaac 162544
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>dbj|AB074972.2| Oryza sativa (japonica cultivar-group) OsEIL2 mRNA for
           ethylene-insensitive-3-like protein, complete cds
          Length = 1934

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 ggcggcggaggcaggcagca 266
           ||||||||||||||||||||
Sbjct: 430 ggcggcggaggcaggcagca 449
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>gb|AC018972.6| Homo sapiens chromosome 18, clone RP11-756M1, complete sequence
          Length = 160602

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 87     ctggagtacattacatgttacaac 110
              |||||||| |||||||||||||||
Sbjct: 151241 ctggagtaaattacatgttacaac 151264
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 247      ggcggcggaggcaggcagca 266
                ||||||||||||||||||||
Sbjct: 29064093 ggcggcggaggcaggcagca 29064074
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>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0519D04
          Length = 193068

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    cctcgccgccgtcgtgttcg 133
              ||||||||||||||||||||
Sbjct: 117457 cctcgccgccgtcgtgttcg 117438
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 243     cggaggcggcggaggcaggc 262
               ||||||||||||||||||||
Sbjct: 1606623 cggaggcggcggaggcaggc 1606604
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>emb|BX842667.2| Mouse DNA sequence from clone RP24-319D9 on chromosome 11, complete
             sequence
          Length = 92969

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   tgctttgtctgcgaggcttt 240
             ||||||||||||||||||||
Sbjct: 47349 tgctttgtctgcgaggcttt 47368
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>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1200_C08
          Length = 106214

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   ggcggcggaggcaggcagca 266
             ||||||||||||||||||||
Sbjct: 12050 ggcggcggaggcaggcagca 12031
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>dbj|AK105095.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A11, full
           insert sequence
          Length = 2757

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 cgccgccgtcgtgttcgcgg 136
           ||||||||||||||||||||
Sbjct: 846 cgccgccgtcgtgttcgcgg 865
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>dbj|AK070555.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061E14, full
           insert sequence
          Length = 2077

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 117 cgccgccgtcgtgttcgcgg 136
           ||||||||||||||||||||
Sbjct: 822 cgccgccgtcgtgttcgcgg 841
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>dbj|AK060806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-G01, full
           insert sequence
          Length = 2103

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 ggcggcggaggcaggcagca 266
           ||||||||||||||||||||
Sbjct: 490 ggcggcggaggcaggcagca 509
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>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124605

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   cgccgccgtcgtgttcgcgg 136
             ||||||||||||||||||||
Sbjct: 30039 cgccgccgtcgtgttcgcgg 30058
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>emb|AL929433.10| Mouse DNA sequence from clone RP23-193M23 on chromosome 4, complete
             sequence
          Length = 198426

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   tgctcctgtggggattaatt 355
             ||||||||||||||||||||
Sbjct: 88210 tgctcctgtggggattaatt 88229
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 243     cggaggcggcggaggcaggc 262
               ||||||||||||||||||||
Sbjct: 1283060 cggaggcggcggaggcaggc 1283041
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>emb|AL928922.7| Mouse DNA sequence from clone RP23-431J22 on chromosome 2, complete
             sequence
          Length = 203047

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   ttctgaaatgtggcttgctc 340
             ||||||||||||||||||||
Sbjct: 36299 ttctgaaatgtggcttgctc 36318


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,940,183
Number of Sequences: 3902068
Number of extensions: 2940183
Number of successful extensions: 59487
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58565
Number of HSP's gapped (non-prelim): 922
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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